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UKOLN is supported  by: Codes, Clouds & Constellations: Open Science in the Data Decade Dr Liz Lyon,  Director, UKOLN, University of Bath, UK Associate Director, UK Digital Curation Centre CNI Meeting, Baltimore, April 2010 . This work is licensed under a Creative Commons Licence Attribution-ShareAlike 2.0
[object Object],[object Object],[object Object],[object Object],http://www.ukoln.ac.uk/ukoln/staff/e.j.lyon/publications.html#november-2009 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Scaling to Share Human Genome printed   http://www.flickr.com/photos/johnjobby/2252981353/sizes/l/
From the Laboratory bench....
… to a national crystallography service....
....to Diamond Light Source
[object Object],[object Object],[object Object],[object Object],http://www.ukoln.ac.uk/projects/I2S2/
Diamond Light Source National Crystallography Service (NCS) Local Earth Sciences Lab University of Cambridge Function International service -multiple communities UK service - multiple institutions.  Also uses Diamond Lone researcher at institution - uses NCS and ISIS large-scale facility Administration Peer-reviewed proposal required Paper-based records –experiments, safety ERA,  instrument time Multiple proposals, multiple forms Metadata Core Scientific MetaData Model  eBank/eCrystals schema ? Identifiers Beam-line number DOI  InChI ? Workflow Formulaic and bespoke Formulaic, unrecorded Complex, unrecorded Software In-house scripts In-house scripts + open-source suite In-house scripts + open-source suite Raw data In-house GDA store ATLAS data-store Laptop / local server Derived data Taken offsite on laptop / USB stick eCrystals repository Laptop / local server / USB stick
 
Technology race to market $1000 genome in <15 minutes ....by 2013?
...data deluge challenges.... ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],...cloud services?
...data clouds in the media
Clients in the cloud
 
Post-genome decade Human genomes: >24  published & almost 200 unpublished
“ P4 medicine : predictive, personalised, preventive, participatory.” Leroy Hood –  Institute for Systems Biology ,[object Object],[object Object],[object Object],[object Object],Image from Scientific American Genome scale network biology Genomic data as a commodity
[object Object],[object Object],[object Object],[object Object],[object Object],Stephen Friend
They have shared their data….
Heather Piwowar … but many researchers don’t share… … and are reluctant to re-use data…
Publication and Attribution http://www.flickr.com/photos/digitalfemme57/3271063366 /
Calls for action, new metrics
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Macro Micro / Nano Attribution granularity ... complexity challenges...
Citing network models ,[object Object],[object Object],[object Object],[object Object],[object Object]
Pathways to Participation http://www.flickr.com/photos/lemontwist/502860137/sizes/o/
Continuum of Openness Open access Closed Access Participation Lone scholar Professional, experts Volunteers interested amateurs Citizen science “ dark data” Creative Commons Attribution-Non-Commercial-Share Alike 2.0
Data Informatics: Logistics dilemma Professional scientist Citizens Capability Capacity Data scientists , LIS Peer production Volunteers,  interested amateurs Community curation Creative Commons Attribution-Non-Commercial-Share Alike 2.0 Professional scientist Observations Audit Preservation Ontologies Metadata schema Annotation Data management plans Selection & Appraisal Data cleansing Training Visualisation
 
Peer Production
 
Using gaming to drive curation
Professional Scientists   Enthusiastic amateurs Training   Citizen scientist Standards and ethics   Local : natural history, environ. Peer-review    Global : astronomy Organisational support   Self-supporting
Citizen science...
Privacy issues? … “ participatory urbanism”?
“ You have zero privacy anyway. Get over it” Scott McNealy, CEO Sun Microsystems, 1999
 
Working  with  science professionals ...cultural challenges for faculty?
Institutions and Informatics University of Edinburgh Informatics Forum   http://www.flickr.com/photos/chris_malcolm/2638210422/sizes/l/
Open Science at Web-Scale Report 2009
Institutional response : High Throughput Biology
[object Object],[object Object],[object Object],[object Object],[object Object]
New data support structures
Facilitating team science - Future Chips - Biocomputation & Bioinformatics - Tetherless World - Integrative Systems Biology - Graphic designers? - Animators? - Social scientists?   - Legal experts?
 
 
Embedding data informatics education ...for faculty & LIS...
Take homes ,[object Object],[object Object],[object Object],[object Object],[object Object],http://www.flickr.com/photos/29170077@N05/4412360636/
Slides will be available at : http://www.ukoln.ac.uk/ukoln/staff/e.j.lyon/presentations.html http://www.dcc.ac.uk/

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Codes, Clouds & Constellations: Open Science in the Data Decade

  • 1. UKOLN is supported by: Codes, Clouds & Constellations: Open Science in the Data Decade Dr Liz Lyon, Director, UKOLN, University of Bath, UK Associate Director, UK Digital Curation Centre CNI Meeting, Baltimore, April 2010 . This work is licensed under a Creative Commons Licence Attribution-ShareAlike 2.0
  • 2.
  • 3. Scaling to Share Human Genome printed http://www.flickr.com/photos/johnjobby/2252981353/sizes/l/
  • 5. … to a national crystallography service....
  • 7.
  • 8. Diamond Light Source National Crystallography Service (NCS) Local Earth Sciences Lab University of Cambridge Function International service -multiple communities UK service - multiple institutions. Also uses Diamond Lone researcher at institution - uses NCS and ISIS large-scale facility Administration Peer-reviewed proposal required Paper-based records –experiments, safety ERA, instrument time Multiple proposals, multiple forms Metadata Core Scientific MetaData Model eBank/eCrystals schema ? Identifiers Beam-line number DOI InChI ? Workflow Formulaic and bespoke Formulaic, unrecorded Complex, unrecorded Software In-house scripts In-house scripts + open-source suite In-house scripts + open-source suite Raw data In-house GDA store ATLAS data-store Laptop / local server Derived data Taken offsite on laptop / USB stick eCrystals repository Laptop / local server / USB stick
  • 9.  
  • 10. Technology race to market $1000 genome in <15 minutes ....by 2013?
  • 11.
  • 12. ...data clouds in the media
  • 13. Clients in the cloud
  • 14.  
  • 15. Post-genome decade Human genomes: >24 published & almost 200 unpublished
  • 16.
  • 17.
  • 18. They have shared their data….
  • 19. Heather Piwowar … but many researchers don’t share… … and are reluctant to re-use data…
  • 20. Publication and Attribution http://www.flickr.com/photos/digitalfemme57/3271063366 /
  • 21. Calls for action, new metrics
  • 22.
  • 23.
  • 24. Pathways to Participation http://www.flickr.com/photos/lemontwist/502860137/sizes/o/
  • 25. Continuum of Openness Open access Closed Access Participation Lone scholar Professional, experts Volunteers interested amateurs Citizen science “ dark data” Creative Commons Attribution-Non-Commercial-Share Alike 2.0
  • 26. Data Informatics: Logistics dilemma Professional scientist Citizens Capability Capacity Data scientists , LIS Peer production Volunteers, interested amateurs Community curation Creative Commons Attribution-Non-Commercial-Share Alike 2.0 Professional scientist Observations Audit Preservation Ontologies Metadata schema Annotation Data management plans Selection & Appraisal Data cleansing Training Visualisation
  • 27.  
  • 29.  
  • 30. Using gaming to drive curation
  • 31. Professional Scientists Enthusiastic amateurs Training Citizen scientist Standards and ethics Local : natural history, environ. Peer-review Global : astronomy Organisational support Self-supporting
  • 33. Privacy issues? … “ participatory urbanism”?
  • 34. “ You have zero privacy anyway. Get over it” Scott McNealy, CEO Sun Microsystems, 1999
  • 35.  
  • 36. Working with science professionals ...cultural challenges for faculty?
  • 37. Institutions and Informatics University of Edinburgh Informatics Forum http://www.flickr.com/photos/chris_malcolm/2638210422/sizes/l/
  • 38. Open Science at Web-Scale Report 2009
  • 39. Institutional response : High Throughput Biology
  • 40.
  • 41. New data support structures
  • 42. Facilitating team science - Future Chips - Biocomputation & Bioinformatics - Tetherless World - Integrative Systems Biology - Graphic designers? - Animators? - Social scientists? - Legal experts?
  • 43.  
  • 44.  
  • 45. Embedding data informatics education ...for faculty & LIS...
  • 46.
  • 47. Slides will be available at : http://www.ukoln.ac.uk/ukoln/staff/e.j.lyon/presentations.html http://www.dcc.ac.uk/