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Viruses

          Chapter 3
Learning objectives
i.   Describe the history of virus discovery.
ii.  Contrast the characteristic of a virus as
     compared to a living cell.
iii. Understand the origin of virus.
iv. Explain virus component and shape.
v. Characterize a bacteriophage.
vi. Contrast bacteriophage lytic and lysogenic
     life cycle.
vii. Describe the life cycle of an enveloped DNA
     and RNA virus.
viii.State the characteristic of viriods and
     prions.
History of virus discovery
In the late 1800s,
botanists had been trying
to find the cause of
tobacco mosaic disease.
In 1892, D. IWANOWSKI
tried to filter the sap of
infected tobacco plants
(Filter capable of
removing particles the
size of all known
bacteria).
Experiment by Iwanoski
History of virus discovery
      The filtrate was FULLY CAPABLE
      of producing the ORIGINAL
      DISEASE in new hosts.
      Nothing could be seen in the
      filtrates using the most powerful
      microscopes, nor could anything
      be cultivated from the filtrates.
      Iwanowski concluded that the
      bacteria was so small / or they
      made a filterable toxin.
History of virus discovery
A Dutch botanist named Martinus
Beijerink ruled out the filterable toxin
conclusion because the filtered sap
are capable of causing undiluted
infection.
The agent cannot be cultivated on
nutrient media (need a host)
In 1935, Stanley
discovered this agent
after crystallization
Virus characteristics




Viruses are not classified into any of the
biological classification system.
They lie in the threshold of life and
nonlife.
Virus characteristics
    Non-Life                     Life
They are acellular,       They      could    only
with no cell nucleus,     reproduce within the
organelles          or    living cells that they
cytoplasm. Therefore,     infect. They use their
they do not have the      genetic information to
components necessary      force the host cell to
to    carry   metabolic   replicate    themselves
activities                (obligate intracellular
independently.            parasite) .
Viruses cannot move
and     reproduce   on
their own.
Virus size   Viruses are smaller
             than bacteria.
             Viruses are too small
             even to be seen by a
             light microscope.
             The biggest size virus is
             about 240-300nm
             (1/10 of red blood
             cells/ size of the
             smallest bacteria)
             The tiniest virus is
             20nm – smaller than a
             ribosome
Virus origin   According to a hypothesis,
               viruses are bits of nucleic
               acid that ‘escaped’ from
               cellular organism.
               Some traces are from
               animal cells, plant cells
               and bacterial cells.
               Their multiple origins
               explain why viruses are
               species-specific.
               However, some other have
               broader range of host cells
Virus component
 Virus consist of only
  I) Nucleic acid (DNA or RNA) The DNA /RNA
      could be single or double stranded.
  II) A capsid or a protein coat which functions in
      protecting the genetic material during the viral
      infection process.
 III) In some viruses, there is an outer envelope
      that encloses the coat, and is made of parts of
      the previously infected cells.
(A complete virus that consist of the genetic material,
the protein coat and an envelope is called the virion)
Virus Component
Virus shape
Virus shape can be based on the capsid
i. Helical (rod-shaped) e.g. tobacco
     mosaic virus
ii. Polyhedral / Icosahedral (many-
     sided shaped) e.g. adenovirus.
iii. Complex combination of both by
     having structures like tail (helical
     and polyhedral) e.g. bacteriophage
iv. Most enveloped virus have spherical
     shape e.g. influenza virus
Virus classification
Before, viruses are classified according to the type of
host that they infected.
The      current      system       reflect   phenotypic
characteristics.
The Baltimore classification system distinguish
viruses based on their
- Method of replication
- Genome type (DNA or RNA)
The International Committee on Taxonomy of
Viruses devised and implemented several rules on
the naming and classification of viruses early in the
1990s.
It started at the level of order and ends at genus
21 virus families that infect humans
Bacteriophage
Much of the knowledge comes from
studying bacteriophage, because they can
be cultured easily within living bacteria.
Bacteriophage possess dsDNA inside their
capsid (protein head). The capsid functions
as protection of their genetic material.
Their tail fibers are the base used to attach
themselves to bacterial host cell
The tail is the channel for their genetic
material to be injected to the host cell.
Bacteriophage
Bacteriophage replication cycle
Bacteriophage replication
There are two types of bacteriophage
replication, LYTIC and LYSOGENIC
cycles.
In a lytic cycle, the virus destroys the
host cell. It is a rapid process where
the host cell undergoes lysis.
In a lysogenic cycle, the viral genome
usually becomes integrated into the
host cell.
Virus lytic cycle
There are five steps in a typical
    bacteriophage lytic reproduction,
i. Attachment-A virus will attach to a
    suitable host cell
ii. Penetration- The whole virus or only
    the genetic material (nucleic acid) will
    penetrate the cell’s cytoplasm. A
    bacteriophage capsid remains on the
    outside of the bacterial cell whereas
    many viruses that infect animal cell
    enter a host cell intact.
Bacteriophage Lytic Cycle
Virus lytic cycle
iii.Replication and synthesis - The viral
    DNA/RNA directs the host cell to
    produce many copies of viral nucleic
    acids and proteins necessary for its
    replication.
iv. Assembly - The viral nucleic acids
    and proteins are assembled together
    to form new infectious particles.
v.  Release - Newly generated viral
    particles are released from the host
    cell.
Virus lysogenic cycle
The infection will enter a latent period. The
host cell is not killed in this process, but
the viral nucleic acid will undergo genetic
recombination with the host cell’s
chromosome. This integrated structure is
called a prophage.
When the bacterial DNA replicates, the
prophage also replicates.
Certain external condition such as UV light
and x-rays cause viruses to revert to a lytic
cycle and then destroy their hosts.
Virus lysogenic cycle
Replication of an enveloped DNA
                virus
Enveloped virus has a different way of infecting
eukaryotic cells.
After attachment to a host-cell receptor, some
enveloped viruses fuse with the animal cell’s
plasma membrane. The viral capsid and nucleic
acid will then be released into the animal cell.
Enveloped virus penetration step




Some virus enter the cell through endocytosis.
In this process, the plasma membrane of the
animal cell invaginates to form a membrane-
bounded vesicle that contains a virus.
Replication of an enveloped DNA
                 virus
The viral DNA will be replicated and
transcribed by the host cell.
After the viral genes are transcribed, the viral
structural proteins are synthesized through
translation outside nucleus.
The new virus particles are then assembled.
Enveloped viruses obtain their glycoprotein
spikes on the envelopes by picking up a
fragment of the host plasma membrane as
they leave the infected cell.
Replication of an enveloped RNA
               virus
The viral genome (single stranded RNA)
function as a template for synthesis of
complementary RNA strand
Some complementary strands became
mRNA that will translated
Viral genome RNA are made using
complementary strands
After translation, assembly and release step
be done in proper sequence
Replication of an RNA virus (retrovirus)
 Virus attach through specific glycoprotein and
 enter through endocytosis
 Digestion of capsid through cellular enzyme
 Viral RNA ia a template for complementary
 DNA sense by reverse transcriptase
 Second DNA strand will be synthesized by
 reverse transcriptase
 Ds DNA incorporated with the cell’s DNA as a
 provirus
 The genes are replicated, transcribed and
 translated to build the components for the
 RNA virus assembly before being released
H1N1 virus
H1N1 virus isolated
from patients found
that it is made up of
genetic elements
from four different
flu viruses – North
American Mexican
influenza, North
American avian
influenza, human
influenza, and swine
influenza virus
Viruslike agents
Viruses is considered as the
smallest living / nonliving microbe.
However, there are even smaller
infectious agents found – viroids
and prions.
Viroids
In 1961, an infective agent in potatoes has
been discovered. The agent is called viroid
and it is smaller than viruses with no
protein coats.
Viroids are infectious RNA particle that
may cause plant diseases by interfering
with mRNA processing.
Prions




Prions are infectious particles made of protein.
Research indicates that prions are normal
proteins that become folded incorrectly.
Prions could cause neurological degenerative
diseases such as mad cow disease and Scrapie.

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Viruses

  • 1. Viruses Chapter 3
  • 2. Learning objectives i. Describe the history of virus discovery. ii. Contrast the characteristic of a virus as compared to a living cell. iii. Understand the origin of virus. iv. Explain virus component and shape. v. Characterize a bacteriophage. vi. Contrast bacteriophage lytic and lysogenic life cycle. vii. Describe the life cycle of an enveloped DNA and RNA virus. viii.State the characteristic of viriods and prions.
  • 3. History of virus discovery In the late 1800s, botanists had been trying to find the cause of tobacco mosaic disease. In 1892, D. IWANOWSKI tried to filter the sap of infected tobacco plants (Filter capable of removing particles the size of all known bacteria).
  • 5. History of virus discovery The filtrate was FULLY CAPABLE of producing the ORIGINAL DISEASE in new hosts. Nothing could be seen in the filtrates using the most powerful microscopes, nor could anything be cultivated from the filtrates. Iwanowski concluded that the bacteria was so small / or they made a filterable toxin.
  • 6. History of virus discovery A Dutch botanist named Martinus Beijerink ruled out the filterable toxin conclusion because the filtered sap are capable of causing undiluted infection. The agent cannot be cultivated on nutrient media (need a host) In 1935, Stanley discovered this agent after crystallization
  • 7. Virus characteristics Viruses are not classified into any of the biological classification system. They lie in the threshold of life and nonlife.
  • 8. Virus characteristics Non-Life Life They are acellular, They could only with no cell nucleus, reproduce within the organelles or living cells that they cytoplasm. Therefore, infect. They use their they do not have the genetic information to components necessary force the host cell to to carry metabolic replicate themselves activities (obligate intracellular independently. parasite) . Viruses cannot move and reproduce on their own.
  • 9. Virus size Viruses are smaller than bacteria. Viruses are too small even to be seen by a light microscope. The biggest size virus is about 240-300nm (1/10 of red blood cells/ size of the smallest bacteria) The tiniest virus is 20nm – smaller than a ribosome
  • 10. Virus origin According to a hypothesis, viruses are bits of nucleic acid that ‘escaped’ from cellular organism. Some traces are from animal cells, plant cells and bacterial cells. Their multiple origins explain why viruses are species-specific. However, some other have broader range of host cells
  • 11. Virus component Virus consist of only I) Nucleic acid (DNA or RNA) The DNA /RNA could be single or double stranded. II) A capsid or a protein coat which functions in protecting the genetic material during the viral infection process. III) In some viruses, there is an outer envelope that encloses the coat, and is made of parts of the previously infected cells. (A complete virus that consist of the genetic material, the protein coat and an envelope is called the virion)
  • 13. Virus shape Virus shape can be based on the capsid i. Helical (rod-shaped) e.g. tobacco mosaic virus ii. Polyhedral / Icosahedral (many- sided shaped) e.g. adenovirus. iii. Complex combination of both by having structures like tail (helical and polyhedral) e.g. bacteriophage iv. Most enveloped virus have spherical shape e.g. influenza virus
  • 14.
  • 15. Virus classification Before, viruses are classified according to the type of host that they infected. The current system reflect phenotypic characteristics. The Baltimore classification system distinguish viruses based on their - Method of replication - Genome type (DNA or RNA) The International Committee on Taxonomy of Viruses devised and implemented several rules on the naming and classification of viruses early in the 1990s. It started at the level of order and ends at genus
  • 16. 21 virus families that infect humans
  • 17. Bacteriophage Much of the knowledge comes from studying bacteriophage, because they can be cultured easily within living bacteria. Bacteriophage possess dsDNA inside their capsid (protein head). The capsid functions as protection of their genetic material. Their tail fibers are the base used to attach themselves to bacterial host cell The tail is the channel for their genetic material to be injected to the host cell.
  • 20. Bacteriophage replication There are two types of bacteriophage replication, LYTIC and LYSOGENIC cycles. In a lytic cycle, the virus destroys the host cell. It is a rapid process where the host cell undergoes lysis. In a lysogenic cycle, the viral genome usually becomes integrated into the host cell.
  • 21. Virus lytic cycle There are five steps in a typical bacteriophage lytic reproduction, i. Attachment-A virus will attach to a suitable host cell ii. Penetration- The whole virus or only the genetic material (nucleic acid) will penetrate the cell’s cytoplasm. A bacteriophage capsid remains on the outside of the bacterial cell whereas many viruses that infect animal cell enter a host cell intact.
  • 23. Virus lytic cycle iii.Replication and synthesis - The viral DNA/RNA directs the host cell to produce many copies of viral nucleic acids and proteins necessary for its replication. iv. Assembly - The viral nucleic acids and proteins are assembled together to form new infectious particles. v. Release - Newly generated viral particles are released from the host cell.
  • 24.
  • 25. Virus lysogenic cycle The infection will enter a latent period. The host cell is not killed in this process, but the viral nucleic acid will undergo genetic recombination with the host cell’s chromosome. This integrated structure is called a prophage. When the bacterial DNA replicates, the prophage also replicates. Certain external condition such as UV light and x-rays cause viruses to revert to a lytic cycle and then destroy their hosts.
  • 27. Replication of an enveloped DNA virus Enveloped virus has a different way of infecting eukaryotic cells. After attachment to a host-cell receptor, some enveloped viruses fuse with the animal cell’s plasma membrane. The viral capsid and nucleic acid will then be released into the animal cell.
  • 28. Enveloped virus penetration step Some virus enter the cell through endocytosis. In this process, the plasma membrane of the animal cell invaginates to form a membrane- bounded vesicle that contains a virus.
  • 29. Replication of an enveloped DNA virus The viral DNA will be replicated and transcribed by the host cell. After the viral genes are transcribed, the viral structural proteins are synthesized through translation outside nucleus. The new virus particles are then assembled. Enveloped viruses obtain their glycoprotein spikes on the envelopes by picking up a fragment of the host plasma membrane as they leave the infected cell.
  • 30. Replication of an enveloped RNA virus The viral genome (single stranded RNA) function as a template for synthesis of complementary RNA strand Some complementary strands became mRNA that will translated Viral genome RNA are made using complementary strands After translation, assembly and release step be done in proper sequence
  • 31. Replication of an RNA virus (retrovirus) Virus attach through specific glycoprotein and enter through endocytosis Digestion of capsid through cellular enzyme Viral RNA ia a template for complementary DNA sense by reverse transcriptase Second DNA strand will be synthesized by reverse transcriptase Ds DNA incorporated with the cell’s DNA as a provirus The genes are replicated, transcribed and translated to build the components for the RNA virus assembly before being released
  • 32. H1N1 virus H1N1 virus isolated from patients found that it is made up of genetic elements from four different flu viruses – North American Mexican influenza, North American avian influenza, human influenza, and swine influenza virus
  • 33. Viruslike agents Viruses is considered as the smallest living / nonliving microbe. However, there are even smaller infectious agents found – viroids and prions.
  • 34. Viroids In 1961, an infective agent in potatoes has been discovered. The agent is called viroid and it is smaller than viruses with no protein coats. Viroids are infectious RNA particle that may cause plant diseases by interfering with mRNA processing.
  • 35. Prions Prions are infectious particles made of protein. Research indicates that prions are normal proteins that become folded incorrectly. Prions could cause neurological degenerative diseases such as mad cow disease and Scrapie.