machine learning deep learning nlp paraphrase detection autoencoders dna amherst college mass spectrometry bioinformatics feynman liang proteomics optogenetics protein degredation lov2 systems biology genomics biology chemical biology biochemistry kalman filter hmm linear systems gaussian process pca linear models mixture of gaussians factor analysis hidden markov model neural networks computer science epigenetics dimerization small molecule chemical inducers of dimerization cid histone acetylation dbd dna-binding domain
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