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The “Who” in Collections
Revealing the Network of Collectors and Determiners
of Bat Specimens
David P. Shorthouse, Agriculture & Agri-Food Canada, Ottawa
https://orcid.org/0000-0001-7618-5230
Deborah Paul, Species File Group, Tallahassee, Florida
https://orcid.org/0000-0003-2639-7520
Nancy Simmons, American Museum of Natural History, New York
https://orcid.org/0000-0001-8807-7499
Tigga Kingston (US)
Jodi Sedlock (US)
Brock Fenton (CA)
Victor Van Cakenberghe (BE)
Paul Bates (GB)
Nancy Simmons (US)
Paul W. Webala (KE)
Cody Thompson (US)
Roberto Portela Miguez (GB)
Gabor Csorba (HU)
Kendra Phelps (US)
Jocelyn Colella (US)
Emma Teeling (IE)
Adam Ferguson (US)
Erik Verheyen (BE)
Cristiane Bastos Silveira (PT)
DeeAnn Reeder (US)
Bruce Patterson (US)
Gary Kwiecinski (US)
Muhammad Idnan (PK)
Shriranjani Iyer(IN)
Kendra Phelps (US)
Ashok Manekar (IN)
Nursel Asan (TR)
Aliaksei Shpak (BY)
Tariq Ahmed Shah (IN)
Thangsuanlian Naulak (IN)
Leigh Richards (ZA)
Shariful Islam (BD)
Shahzad Ali (PK)
Rajesh Puttaswamaiah (IN)
Yafhed Martínez (MX)
Anna Nele Herdina (AT)
Ara Monadjem (SZ)
Siti Rabiatul Fajri (ID)
Mohammed Lamine Bendjeddou (RO)
Dau Lal Bohra (IN)
Jayaraj Vijaya Kumaran (MY)
Gabriela Rios-Sotelo (US)
Muhammad Muhajir Hasibuan (ID)
Sophie Gryseels (BE)
Clare Mateke (ZM)
Tamara Szentivanyi (US)
Deb Paul (US)
David Shorthouse (CA)
Aja Sherman (US)
Trevor Dalton (US)
Erica Krimmel (US)
Katie Pearson (US)
James Pagé (CA)
Muhammad Aminuddin Baqi
bin Hasrizal Fuad (MY)
Azniza Mahyudin (MY)
Burton Lim (CA)
Bob Timm (US)
Kuenzeng Dorji (BT)
Facilitators
Siobhan Leachman (NZ)
Wikipedian
This RAPID award will produce and deliver
a georeferenced, vetted and consolidated
data product for horseshoe bats and
related species to facilitate understanding
of the sources, distribution, and spread of
SARS-CoV-2 and related viruses, a timely
response to the ongoing global pandemic
caused by SARS-CoV-2 and an important
contribution to the global effort to
consolidate and provide quality data that
are relevant to understanding emergent
and other properties the current
pandemic. This RAPID award is made by
the Division of Biological Infrastructure
(DBI) using funds from the Coronavirus Aid,
Relief, and Economic Security (CARES) Act.
https://www.youtube.com/watch?v=fB1YtQgGSII
(1.5 hr)
Distributed Systems of Scientific Collections (DiSSCo)
Key Integrators in the Biological Sciences
Time Place Scientific Names
People…
…we scatter breadcrumbs that corroborate time, place, and scientific names
Our Immediate Goal
Link digitally available bat specimen data to their collectors & determiners
• Reveal errors or inconsistencies in transcription
• Dates, georeferencing, determinations
• Enhance the RAPID data product
• Dynamic list of experts, living &/or deceased
But…
We do not know all the bat collectors & determiners
Why Link People to Biodiversity Data?
Credit & recognition
History of science
Facilitate new discoveries
Gateway to linking other items (eg
field notes, publications, sequences)
Detect errors or fill gaps
Engage with new local and
international audiences (eg
genealogists)
But what is a Person in this context?
A human with an open, verifiable, and shared digital identifier.
eg Michael Carleton https://orcid.org/0000-0003-2401-0564
What is an Agent String in this context?
A string of characters purported to represent a person as might be
present on or transcribed from a specimen label but without a link to a
digital identifier.
eg “M. Carleton”
Pteropodidae J. E. Gray, 1821
Rhinopomatidae Bonaparte, 1838
Craseonycteridae Hill, 1974
Megadermatidae H. Allen, 1864
Rhinonycteridae J. E. Gray, 1866
Hipposideridae Lydekker, 1891
Rhinolophidae J. E. Gray, 1825
Nycteridae Van der Hoeven, 1855
Emballonuridae Gervais in de Castelnau, 1855
Myzopodidae Thomas, 1904
Mystacinidae Dobson, 1875
Thyropteridae Miller, 1907
Furipteridae J. E. Gray, 1866
Noctilionidae J. E. Gray, 1821
Mormoopidae Saussure, 1860
Phyllostomidae J. E. Gray, 1825
Natalidae J. E. Gray, 1825
Molossidae Gervais in de Castelnau, 1855
Miniopteridae Dobson, 1875
Cistugidae Lack et al., 2010
Vespertilionidae J. E. Gray, 1821
40,152
40,628
4,513
37
2,325
9,923
38,213
93
85
855
461
8,245
30,564
95,716
337,350
6,862
107,473
27,609
21
285,527
2,930 agent strings of
collectors & determiners
Part of Our Task is to Churn…
STRINGS => THINGS
Agent String => Person
“M. Carleton” => https://orcid.org/0000-0003-2401-0564
Semantic Web-ready URI
GBIF Agent Strings
Parsed from raw specimen data
Known People
Clean, curated list with identifiers
Identifier Systems for People
Open, metadata can be created, edited, or removed
Has open tools and modern services
Centralized, financially and technically sustainable
Machine-readable & actionable
Reusable for widely disparate purposes
Global Biodiversity Information Facility
https://gbif.org
ORCID provides a persistent digital identifier (an ORCID iD) that you
own and control, and that distinguishes you from every other
researcher.
https://orcid.org
Aliases, birth & death dates, affiliations, links to other
identifiers, employment history, country of citizenship, field of
work, education, …
…and each statement can point to evidence
https://www.wikidata.org
Near-term Goals & Other Possible Outcomes
Roll the links between person & specimen into
collections
Improve tools & services as we make linkages
Facilitate how stories are told with visualizations
https://bionomia.net
https://bionomia.net/taxon/Rhinolophidae
https://bionomia.net/taxon/Hipposideridae
Task #1
Visit https://orcid.org and create a profile if you don’t already have one
Make public:
• “Also known as” names
• Your employment & education
• Your country
• Your keywords, websites, other IDs
• Your publications
Task #2
Login to Bionomia, https://bionomia.net/ with your ORCID credentials
& claim your specimen records
Optional Task #1 – Breakout Room “Strings”
Add your knowledge about the unknown “Agent Strings”
Add web site URLs to “Notes”
where possible
Indicate if living or deceased
Add anything that might help
Put your initials in brackets
Optional Task #2 – Breakout Room “Things”
Claim your specimen records & attribute some to known people
Add your name to the
“Claimant” column to tell
others here
Share any interesting notes,
tidbits in the agenda
Attributing Specimens
Known People
example: Glover Morrill Allen
https://bionomia.net/Q1532266
Attributing Specimens
Known People
example: Glover Morrill Allen
https://bionomia.net/Q1532266
Done attributing? Make
public, refresh stats
Attributing specimens
Known people
example: Jodi Sedlock
https://orcid.org/0000-0003-2767-5932
Let’s get started (two paths)
1. Working list of “Agents” and People
2. See Known People tab
3. Claimant: Claim some to work on in Bionomia
4. Click Bionomia Helping URL to start claiming
Let’s get started (two paths)
1. Working list of “Agents” and People
2. See GBIF Agent Strings tab
3. Notes column: add information, your initials in (), add sources if possible
Schedule
11:15 AM – 3:00 PM EST
Working on your own or in breakout rooms
2:00 PM – 2:30 PM EST
Join Siobhan Leachman in main Zoom room to learn Wikidata
3:00 PM – 4:00 PM EST
Report back, illustration of what we accomplished, wrap-up, share
insights, discuss next steps

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The Who in Collections: Revealing the Network of Collectors and Determiners of Bat Specimens

  • 1. The “Who” in Collections Revealing the Network of Collectors and Determiners of Bat Specimens David P. Shorthouse, Agriculture & Agri-Food Canada, Ottawa https://orcid.org/0000-0001-7618-5230 Deborah Paul, Species File Group, Tallahassee, Florida https://orcid.org/0000-0003-2639-7520 Nancy Simmons, American Museum of Natural History, New York https://orcid.org/0000-0001-8807-7499
  • 2. Tigga Kingston (US) Jodi Sedlock (US) Brock Fenton (CA) Victor Van Cakenberghe (BE) Paul Bates (GB) Nancy Simmons (US) Paul W. Webala (KE) Cody Thompson (US) Roberto Portela Miguez (GB) Gabor Csorba (HU) Kendra Phelps (US) Jocelyn Colella (US) Emma Teeling (IE) Adam Ferguson (US) Erik Verheyen (BE) Cristiane Bastos Silveira (PT) DeeAnn Reeder (US) Bruce Patterson (US) Gary Kwiecinski (US) Muhammad Idnan (PK) Shriranjani Iyer(IN) Kendra Phelps (US) Ashok Manekar (IN) Nursel Asan (TR) Aliaksei Shpak (BY) Tariq Ahmed Shah (IN) Thangsuanlian Naulak (IN) Leigh Richards (ZA) Shariful Islam (BD) Shahzad Ali (PK) Rajesh Puttaswamaiah (IN) Yafhed Martínez (MX) Anna Nele Herdina (AT) Ara Monadjem (SZ) Siti Rabiatul Fajri (ID) Mohammed Lamine Bendjeddou (RO) Dau Lal Bohra (IN) Jayaraj Vijaya Kumaran (MY) Gabriela Rios-Sotelo (US) Muhammad Muhajir Hasibuan (ID) Sophie Gryseels (BE) Clare Mateke (ZM) Tamara Szentivanyi (US) Deb Paul (US) David Shorthouse (CA) Aja Sherman (US) Trevor Dalton (US) Erica Krimmel (US) Katie Pearson (US) James Pagé (CA) Muhammad Aminuddin Baqi bin Hasrizal Fuad (MY) Azniza Mahyudin (MY) Burton Lim (CA) Bob Timm (US) Kuenzeng Dorji (BT) Facilitators Siobhan Leachman (NZ) Wikipedian
  • 3. This RAPID award will produce and deliver a georeferenced, vetted and consolidated data product for horseshoe bats and related species to facilitate understanding of the sources, distribution, and spread of SARS-CoV-2 and related viruses, a timely response to the ongoing global pandemic caused by SARS-CoV-2 and an important contribution to the global effort to consolidate and provide quality data that are relevant to understanding emergent and other properties the current pandemic. This RAPID award is made by the Division of Biological Infrastructure (DBI) using funds from the Coronavirus Aid, Relief, and Economic Security (CARES) Act.
  • 5.
  • 6. Distributed Systems of Scientific Collections (DiSSCo)
  • 7. Key Integrators in the Biological Sciences Time Place Scientific Names
  • 8. People… …we scatter breadcrumbs that corroborate time, place, and scientific names
  • 9. Our Immediate Goal Link digitally available bat specimen data to their collectors & determiners • Reveal errors or inconsistencies in transcription • Dates, georeferencing, determinations • Enhance the RAPID data product • Dynamic list of experts, living &/or deceased But… We do not know all the bat collectors & determiners
  • 10. Why Link People to Biodiversity Data? Credit & recognition History of science Facilitate new discoveries Gateway to linking other items (eg field notes, publications, sequences) Detect errors or fill gaps Engage with new local and international audiences (eg genealogists)
  • 11.
  • 12. But what is a Person in this context? A human with an open, verifiable, and shared digital identifier. eg Michael Carleton https://orcid.org/0000-0003-2401-0564 What is an Agent String in this context? A string of characters purported to represent a person as might be present on or transcribed from a specimen label but without a link to a digital identifier. eg “M. Carleton”
  • 13. Pteropodidae J. E. Gray, 1821 Rhinopomatidae Bonaparte, 1838 Craseonycteridae Hill, 1974 Megadermatidae H. Allen, 1864 Rhinonycteridae J. E. Gray, 1866 Hipposideridae Lydekker, 1891 Rhinolophidae J. E. Gray, 1825 Nycteridae Van der Hoeven, 1855 Emballonuridae Gervais in de Castelnau, 1855 Myzopodidae Thomas, 1904 Mystacinidae Dobson, 1875 Thyropteridae Miller, 1907 Furipteridae J. E. Gray, 1866 Noctilionidae J. E. Gray, 1821 Mormoopidae Saussure, 1860 Phyllostomidae J. E. Gray, 1825 Natalidae J. E. Gray, 1825 Molossidae Gervais in de Castelnau, 1855 Miniopteridae Dobson, 1875 Cistugidae Lack et al., 2010 Vespertilionidae J. E. Gray, 1821 40,152 40,628 4,513 37 2,325 9,923 38,213 93 85 855 461 8,245 30,564 95,716 337,350 6,862 107,473 27,609 21 285,527 2,930 agent strings of collectors & determiners
  • 14. Part of Our Task is to Churn… STRINGS => THINGS Agent String => Person “M. Carleton” => https://orcid.org/0000-0003-2401-0564 Semantic Web-ready URI
  • 15. GBIF Agent Strings Parsed from raw specimen data
  • 16. Known People Clean, curated list with identifiers
  • 17. Identifier Systems for People Open, metadata can be created, edited, or removed Has open tools and modern services Centralized, financially and technically sustainable Machine-readable & actionable Reusable for widely disparate purposes
  • 18.
  • 19. Global Biodiversity Information Facility https://gbif.org
  • 20. ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. https://orcid.org
  • 21. Aliases, birth & death dates, affiliations, links to other identifiers, employment history, country of citizenship, field of work, education, … …and each statement can point to evidence https://www.wikidata.org
  • 22. Near-term Goals & Other Possible Outcomes Roll the links between person & specimen into collections Improve tools & services as we make linkages Facilitate how stories are told with visualizations
  • 24.
  • 25.
  • 26.
  • 27.
  • 30. Task #1 Visit https://orcid.org and create a profile if you don’t already have one Make public: • “Also known as” names • Your employment & education • Your country • Your keywords, websites, other IDs • Your publications
  • 31. Task #2 Login to Bionomia, https://bionomia.net/ with your ORCID credentials & claim your specimen records
  • 32.
  • 33. Optional Task #1 – Breakout Room “Strings” Add your knowledge about the unknown “Agent Strings” Add web site URLs to “Notes” where possible Indicate if living or deceased Add anything that might help Put your initials in brackets
  • 34. Optional Task #2 – Breakout Room “Things” Claim your specimen records & attribute some to known people Add your name to the “Claimant” column to tell others here Share any interesting notes, tidbits in the agenda
  • 35. Attributing Specimens Known People example: Glover Morrill Allen https://bionomia.net/Q1532266
  • 36. Attributing Specimens Known People example: Glover Morrill Allen https://bionomia.net/Q1532266
  • 38. Attributing specimens Known people example: Jodi Sedlock https://orcid.org/0000-0003-2767-5932
  • 39. Let’s get started (two paths) 1. Working list of “Agents” and People 2. See Known People tab 3. Claimant: Claim some to work on in Bionomia 4. Click Bionomia Helping URL to start claiming
  • 40. Let’s get started (two paths) 1. Working list of “Agents” and People 2. See GBIF Agent Strings tab 3. Notes column: add information, your initials in (), add sources if possible
  • 41. Schedule 11:15 AM – 3:00 PM EST Working on your own or in breakout rooms 2:00 PM – 2:30 PM EST Join Siobhan Leachman in main Zoom room to learn Wikidata 3:00 PM – 4:00 PM EST Report back, illustration of what we accomplished, wrap-up, share insights, discuss next steps

Hinweis der Redaktion

  1. Click on Bionomia Link in the Known People spreadsheet Example: https://bionomia.net/help-others/Q1532266 Note these are not Rhinolophidae or Hipposideridae
  2. Filter (if needed) Start claiming (collected, identified, both, not them) Use Bulk Attributions if there are many. For those comfy with spreadsheets in CSV format.
  3. Andre Brosset https://bionomia.net/help-others/Q21393822 Claim, then make Public > triggers Tweet > you get credit Refresh if Wikidata information (or ORCID info) changes. Works the same for folks with ORCID, but you won’t be able to make their Profiles public!
  4. See Walter Reeves Zappey He’ll need a Wikidata page, BEFORE he can get added to Bionomia. All (well most) of data needed to create a page for him is now there. See Siobhan’s presentation to learn how to do this – or share to show others. OR work with a partner.