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Application of Unsymmetrical Indirect Covariance NMR

   Methods to the Computation of the 13C↔15N HSQC-IMPEACH and
                13
                     C↔15N HMBC-IMPEACH Correlation Spectra


                     Gary E. Martin,* Bruce D. Hilton, and Patrick A. Irish

                             Rapid Structure Characterization Laboratory
                                      Pharmaceutical Sciences
                                 Schering-Plough Research Institute
                                         Summit, NJ 07059

                                           Kirill A. Blinov

                                  Advanced Chemistry Development
                                         Moscow Division
                                         Moscow 117504
                                        Russian Federation

                                          Antony J. Williams

                                  Advanced Chemistry Development
                                     Toronto, Ontario M5C 1T4
                                              Canada


Keywords:       unsymmetrical indirect covariance, 13C-15N heteronuclear correlation, 1H-
                13
                   C GHSQC, 1H-13C GHMBC, 1H-15N IMPEACH-MBC, 13C-15N HSQC-
                IMPEACH, 13C-15N HMBC-IMPEACH
                     13
Running Title:            C-15N Heteronuclear Shift Correlation


* To whom inquiries should be addressed
   gary.martin@spcorp.com
   Schering-Plough Research Institute
   Rapid Structure Characterization Laboratory
   556 Morris Ave
   Summit, NJ 07901
   +908.473.5398
   +908.473-6559 (fax)




                                                  1
Abstract

Utilization of long-range 1H-15N heteronuclear chemical shift correlation has continually

grown in importance since the first applications were reported in 1995. More recently,

indirect covariance NMR methods have been introduced followed by the development of

unsymmetrical indirect covariance processing methods. The latter technique has been

shown to allow the calculation of hyphenated 2D NMR data matrices from more readily

acquired non-hyphenated 2D NMR spectra. We recently reported the use of

unsymmetrical indirect covariance processing to combine 1H-13C GHSQC and 1H-15N

GHMBC long-range spectra to yield a 13C-15N HSQC-HMBC chemical shift correlation

spectrum that could not be acquired in a reasonable period of time without resorting to
15
     N-labeled molecules. We now report the unsymmetrical indirect covariance processing

of 1H-13C GHMBC and 1H-15N IMPEACH spectra to afford a 13C-15N HMBC-

IMPEACH spectrum that has the potential to span as many as 6 to 8 bonds. Correlations

for carbon resonances long-range coupled to a protonated carbon in the 1H-13C HMBC

spectrum are transferred via the long-range 1H-15N coupling pathway in the 1H-15N

IMPEACH spectrum to afford a much broader range of correlation possibilities in the
13
     C-15N HMBC-IMPEACH correlation spectrum. The indole alkaloid vincamine is used

as a model compound to illustrate the application of the method.




                                             2
Introduction

       Long-range 1H-15N 2D NMR methods have become important tools in structure

elucidation since the first experiments were reported at natural abundance in 1995.1,2

Long-range 1H-15N methods have been reviewed several times.3-7 The acquisition of

long-range 1H-15N data has become sufficiently prevalent that several pulse sequences

have recently been reported that allow the simultaneous acquisition of 1H-13C and 1H-15N

GHMBC spectra.8,9

       Recently, another new area of investigation, covariance NMR spectroscopy, has

been receiving considerable attention.10,11 The work of greatest applicability to small

molecule spectroscopy is probably the 2004 communication of Zhang and Brüschweiler

that described the calculation of a 13C-13C homonuclear correlation spectrum derived

from an HSQC-TOCSY spectrum.11 That communication stimulated our analysis of

artifacts that occur in the indirect covariance processed spectra due to proton resonance

overlaps in the F2 frequency domain.12 In an effort to eliminate artifacts, we also reported

the development of unsymmetrical indirect covariance processing, a method that allows a

pair of 2D NMR data matrices to be coprocessed. In the case of inverted direct response

HSQC-TOCSY spectra, the negative direct response component of the data can be

coprocessed with the positive relayed response component affording a covariance

spectrum in which one type of overlap artifact is eliminated and the second is diagonally

asymmetrical, allowing those responses to be eliminated by conventional symmetrization.

We have subsequently shown that unsymmetrical indirect covariance processing can also

be used to coprocess discretely acquired 2D NMR spectra to afford spectra corresponding

to various 2D-NMR experiments such as m,n-ADEQUATE,13 HSQC-COSY,14,15 and




                                             3
most recently, HSQC-NOESY.16 In a further extension of the unsymmetrical indirect

covariance processing method, we recently reported the application of the technique in

the computation of 13C-15N correlation spectra through the mathematical combination of

multiplicity-edited 1H-13C GHSQC and 1H-15N GHMBC spectra.17,18 We now wish to

communicate the results we have obtained for the alkaloid vincamine (1), which was

previously studied by long-range 1H-15N GHMBC methods.19 Specifically, we wish to

contrast the results obtained by unsymmetrical coprocessing of 1H-13C GHSQC and 1H-
15
     N IMPEACH spectra with those obtained by coprocessing 1H-13C GHMBC and 1H-15N

IMPEACH-MBC (1H-15N IMPEACH hereafter) to the latter coprocessed spectra

providing a spectrum that can be described as a 13C-15N HMBC-IMPEACH correlation

matrix.



                                   9                       6

                            10          8             7         5

                                                           H
                            11          13            2         N
                                                                4
                                   12        N             3
                                             1

                                   O         14            16          18

                                        21            15        17

                                             OH            19

                                        O                       CH 3
                                                                20
                                 H 3C
                                   22


                                                  1

Experimental

          All NMR data were recorded using a sample prepared by dissolving

approximately 10 mg of vincamine dissolved in ~180 μL d6-DMSO, after which the

solution was transferred via a Teflon™ (Hamilton) needle to a 3 mm NMR tube



                                                  4
(Wilmad). All of the data were acquired using a Varian three channel 500 MHz NMR

spectrometer equipped with a gradient inverse triple resonance NMR probe. Spectra

were recorded with identical F2 (proton) spectral widths. The 1H-13C GHSQC spectrum

was acquired as 1024 x 96 data points; the 10 Hz 1H-13C GHMBC data were recorded as

2048 x 160 data points; and the 1H-15N IMPEACH-MBC data were recorded as 1024 x

96 data points. The multiplicity-edited GHSQC and GHMBC pulse sequences used were

directly from the Varian pulse sequence library. The IMPEACH-MBC pulse sequence

used was that described by Hadden, Martin, and Krishnamurthy20 without any further

modification. All three of the 2D NMR data sets were processed to afford final spectra

consisting of 2048 x 512 points. The data were linear predicted in the 2 nd dimension to

twice the number of acquired points followed by zero-filling to 512 points prior to

Fourier transformation. The unsymmetrical indirect covariance processing was

performed using ACD/Labs SpecManager v10.02. The approximate computation time

was ~5 s on a Dell Latitude D610 computer with 1 Gb of RAM and a 1.7 GHz processor.

       The unsymmetrical indirect covariance matrix can be calculated by



                                     C = RN * RCT                                     [1]



where RN and RC correspond to the real data matrices from the long-range 1H-15N

GHMBC and 1H-13C multiplicity-edited GHSQCAD spectra, respectively. In the present

report, the GHSQCAD data are plotted with CH and CH 3 resonances with positive phase

and CH2 resonances with negative phase. The 1H-13C data matrix is transposed to RCT

during processing.   The data were acquired and processed so that there were equal




                                            5
numbers of columns in the data sets, i.e. RN is N * M1 and RC is N * M2 to allow the

multiplication of the data matrices. In the present example, F2 spectral widths were

identical although that is not an absolute requirement. By definition, the following

formula is used to calculate each element Cij (i and j are row indices in the initial

matrices, correspondingly, RN and RC) of data matrix C:



   Cij = (RN)ij * [(RC)ij]T = (RN)i1 * (RC)j1 + (RN)i2 * (RC)j2 + … + (RN)iN * (RC)jN   [2]



Each element of matrix C is the sum of products of values (RN)ik and (RC)jk. A

necessary condition is to have non-zero elements in equivalent positions in the rows of

(RN)i and (RC)j. For two “ideal” 2D NMR spectra, assuming zero noise in the data

matrices, the sum of a matrix element will be non-zero when rows (RN)i and (RC)j have

crosspeaks in the same position.



Results and Discussion

       The application of unsymmetrical indirect covariance processing to combine

discretely acquired 2D NMR spectra arose from an investigation of artifacts in 13C-13C

correlation plots that arise from indirect covariance processed inverted direct response

(IDR) GHSQC-TOCSY spectra.13 Significant time savings have been demonstrated in

the calculation of GHSQC-COSY14,15 and GHSQC-NOESY16 as compared to the direct

acquisition of these data via the hyphenated 2D NMR experiments. For experiments such

as 13C-13C INADEQUATE21 or m,n-ADEQUATE,22 the equivalent data matrix calculated

by combining 1H-13C GHSQC and GHMBC spectra13 allows even greater spectrometer




                                                  6
time savings to be realized because of the low statistical probability (1:10,000) of two 13C

nuclides being in the structure of a single molecule. At natural abundance, 13C-15N

experiments are hampered by even lower statistical probability because of the 0.37%

natural abundance of 15N vs. 13C at 1.1 %. Based on relative natural abundance, the

probability of a 13C and 15N being in the same molecule is slight, ~1:27,000. The

likelihood of 13C and 15N being in positions in a given structure and amenable to

correlation via 1JCN or nJCN where n = 2-4 is, of course, correspondingly lower.

Consequently, direct and long-range 13C -15N experiments have not been reported to date,

although experiments of this type are quite important in the study of 13C/15N doubly

labeled proteins.23 We were thus very interested in exploring the combination of 1H-13C

and 1H-15N 2D NMR experiments via unsymmetrical indirect covariance methods. Our

first investigation along these lines yielded a 13C-15N long-range correlation plot for

strychnine calculated from a multiplicity-edited 1H-13C GHSQC spectrum and a 1H-15N

GHMBC spectrum.16 It has been shown previously that 1H-15N IMPEACH-MBC24 and

CIGAR-HMBC25 experiments provide better experimental access to long-range 1H-15N

correlation information because of the accordion-optimization of the long-range

magnetization transfer delay.

       Using an approximately 10 mg sample of vincamine (1) dissolved in 180 μL d6-

DMSO, 1H-13C GHSQC and 1H-15N IMPEACH-MBC (3-8 Hz optimized) spectra were

acquired and processed to yield identically digitized 2D NMR data matrices in the F2

frequency domain. The data sets were also equivalently digitized in the F1 frequency

domain although this is not a requirement for the unsymmetrical indirect covariance

processing algorithm (ACD/Labs SpecManager v10.02).




                                              7
13
     C↔15N HSQC-IMPEACH

        Discretely acquired coherence transfer experiments of the type A → B and

A → C can be manipulated to indirectly afford a B ↔ C correlation spectrum using

unsymmetrical indirect covariance processing techniques as in our previous work13-18 or

using projection reconstruction methods described by Kupče and Freeman.9,26,27 Figure

1 shows the multiplicity-edited 1H-13C HSQC and the 3-8 Hz optimized 1H-15N

IMPEACH spectra flanking the 13C↔15N HSQC-IMPEACH correlation spectrum

indirectly calculated by unsymmetrical indirect covariance processing. Responses arising

via 2JNH couplings correspond to direct 13C↔15N correlations; responses arising via 3JNH

and 4JNH heteronuclear coupling pathways correspond to 2JCN and 3JCN correlation

responses, respectively. All of the expected 13C↔15N correlations based on the

correlations observed in the 1H-15N IMPEACH spectrum are observed in the 13C↔15N

HSQC-IMPEACH correlation spectrum with the exception of a correlation for the 14-

hydroxyl proton. The 14-hydroxyl proton is not directly bound to a 13C resonance and

hence cannot yield a correlation response in the 13C↔15N HSQC-IMPEACH correlation

spectrum. The phase of the responses in the 13C↔15N HSQC-IMPEACH correlation

spectrum is defined by the multiplicity-editing of the 1H-13C GHSQC spectrum.

Responses correlating methylene carbons to nitrogen are inverted and displayed in red;

responses correlating methine and methyl (none of the latter occur in the structure of

vincamine) carbons to nitrogen are positive and plotted in black. It should also be noted

that the 3-8 Hz optimized 1H-15N IMPEACH spectrum of vincamine (1) contains several

responses not observed in the 10 Hz optimized GHMBC spectrum previously reported. 19




                                             8
N4
                                                            40                                                                                                           40
                                                                                                                                      C19        C18 C6
                                                                                                                   C3
                                                                                                                                C5




                                                                  F1 Chemic al Shift (ppm)




                                                                                                                                                                               F1 Chemic al Shift (ppm)
                                                            60                                                                                                           60



                                                            80                                                                                                           80



                                                            100                                                                                                          100



                                                            120                                                                                                          120
                                                                                             C11 C12                                     C15

                                                            140                                                                                  N1                      140

     8      7   6       5            4          3   2   1                                    120       100    80          60             40           20         0
                    F2 Chemical Shif t (ppm )




                                                                                                                                                C18
                                                                                                                                                                          1

                                                                                                                                C15
                                                                                                                                               C17
                                                                                                                                C19                         C6
                                                                                                                                                                          2

                                                                                                                               C5




                                                                                                                                                                                   F2 Chemic al Shift (ppm)
                                                                                                                                                                          3
                                                                                                                        C3


                                                                                                                                                                          4



                                                                                                                                                                          5



                                                                                                                                                                          6



                                                                                                                                                                          7




                                                                                             120       100    80          60              40           20            0
                                                                                                             F1 Chemical Shif t (ppm )




Figure 1.




                                                                     9
Figure 1.   The 13C↔15N HSQC-IMPEACH correlation spectrum of vincamine (1) obtained via the unsymmetrical indirect

            covariance coprocessing is shown in the top right panel. The spectrum was derived from the multiplicity-edited 1H-13C

            GHSQC (bottom right panel) and 3-8 Hz optimized 1H-15N IMPEACH spectra (top left panel). The main body of the
            13
                 C↔15N HSQC-IMPEACH spectrum was plotted with a 3% threshold value. The boxed regions were plotted with a

            0.7 % threshold to minimize t1 noise in the F1 frequency domain from the more intense correlation responses. The

            correlation from the 14-hydroxyl proton to the N1 indole nitrogen is not observed in the 13C↔15N HSQC-IMPEACH

            spectrum since this proton is not directly bound to a carbon resonance. The phase of responses in the 13C↔15N HSQC-

            IMPEACH is governed by the multiplicity-editing of the 1H-13C GHSQC spectrum used in the unsymmetrical indirect

            covariance processing. Methylene resonances are plotted in red and have negative phase; methine and methyl (none of

            the latter afford responses in the 13C↔15N spectrum of vincamine) have positive phase and are plotted in black.




                                                               10
9                             6

                   10            8                 7              5

                                                        H
                   11            13                2          N
                                                                  4
                          12            N               3              19
                                         1

                          O              14             16             18

                                 22                15             17

                                        OH              20

                                 O                            CH 3
                                                                  21
                        H 3C
                          23




Figure 2.      Correlations observed in the 13C↔15N HSQC-IMPEACH spectrum of

               vincamine (1). The correlation from the 14-hydroxyl resonance (red

               arrow) is not observed in the 13C↔15N correlation spectrum since this

               proton is not directly bound to a 13C resonance.



        Correlations observed in the 13C↔15N HSQC-IMPEACH correlation spectrum are

summarized on the structure shown in Figure 2. In the context of the 13C↔15N HMBC-

IMPEACH discussed below, it is worth noting that the there are no correlations observed

in the 13C↔15N HSQC-IMPEACH spectrum that link the two nitrogen resonances, which

would be desirable if this were an unknown structure in the process of being elucidated.



13
     C↔15N HMBC-IMPEACH

        The absence of an intense correlation such as the 14-hydroxyl proton to the N1

resonance, in conjunction with a desire to experimentally access a larger segment of the


                                              11
molecular structure prompted the exploration of the combination of 1H-13C HMBC and
1
    H-15N IMPEACH 2D NMR experiments via unsymmetrical indirect covariance

processing methods. While we have employed 1H-15N IMPEACH data set in this study,

any long-range 1H-15N correlation experiment can be employed.

          A fundamental premise of calculating a 13C↔15N HMBC-IMPEACH correlation

data matrix was to explore the transfer of long-range 1H-13C connectivity information

from a given proton resonance in the 1H-13C HMBC to 15N in the final 13C↔15N HMBC-

IMPEACH spectrum. As an example, consider the extensive long-range 1H-13C

correlations observed for the 15-methylene AB spin system in the GHMBC spectrum of

vincamine (1) summarized in Figure 3.

          Examining the N1 chemical shift in the 13C↔15N HMBC-IMPEACH spectrum

shown in Figure 4 (top right panel) we note that all of the long-range correlations

anticipated (Figure 3) are indeed observed in the 13C↔15N correlation spectrum,

including a correlation to the C3 resonance, which is pivotally located between the N1

and N4 resonances of vincamine, and thus capable of potentially providing the means of

linking the two nitrogens in the carbon skeleton. A weak correlation is also observed for

the C15 methylene resonance, which must be transferred to N1 via some long-range 1H-
15
     N coupling pathway, most probably a 3JNH coupling from H3 to N1. The weak

correlations from C11 and C12 to N1 observed in Figure 1 are not observed in the
13
     C↔15N HMBC-IMPEACH spectrum shown in Figure 4.

          By combining the long-range couplings of a 1H-13C GHMBC experiment, which

can routinely span two to four bonds, with those of a 1H-15N IMPEACH experiment,

which typically spans two or three bonds, an investigator has the means of visualizing




                                            12
correlations across five or more bonds directly in the 13C↔15N HMBC-IMPEACH

spectrum. In comparison, the same connectivity information can be indirectly extracted

from the contributing 2D NMR spectra.



                        9                              6

                 10            8                  7          5

                                                       H
                 11            13                 2          N
                                                             4
                        12              N              3             19
                                        1

                        O               14             16            18

                               22                 15         17

                                        OH             20

                               O                             CH 3
                                                             21
                      H 3C
                        23




Figure 3.     Long-range 1H-13C correlations observed from the 15-methylene AB spin

              system in the 1H-13C GHMBC spectrum of vincamine (1). 1H-13C long-

              range correlations are denoted by black arrows; the correlation from

              C15 ↔ N1 is denoted by the red arrow.




                                             13
20                                                                                                          20

                                                                                                                       N4
                                                                    40                                                                                                          40
                                                                                                                             C7       C14        C3                    C6
                                                                                                                                                            C16




                                                                                                                                                                                                                F1 Chemical Shift (ppm)
                                                                          F1 Chemical Shift (ppm)
                                                                    60                                                                                C15                       60
                                                                                                                                                                 C20
                                                                                                                                                       or
                                                                                                                                                      C19                       80
                                                                    80


                                                                    100                                                                                                         100
                                                                                                                                                           C16

                                                                    120                                                                               C15        C20            120
                                                                                                                                                 C3
                                                                                                          C22         C13         C14
                                                                    140
                                                                                                    N1                                                             C17          140


            8   7   6        5       4        3    2   1        0                                               150           100                     50                    0
                        F2 Chemical Shif t (ppm)                                                                      F2 Chemical Shif t (ppm)




                                                                                                                                                                                1
                                                                                                    C15
                                                                                                                                                                                2




                                                                                                                                                                                      F2 Chemical Shift (ppm)
                                                                                                                                                                                3


                                                                                                                                                                                4


                                                                                                                                                                                5


                                                                                                                                                                                6


                                                                                                                                                                                7


                                                                                                                150           100                      50                   0
                                                                                                                      F1 Chemical Shif t (ppm)




Figure 4.




                                                           14
Figure 4.   The 13C↔15N HMBC-IMPEACH correlation spectrum of vincamine (1) obtained via the unsymmetrical indirect

            covariance coprocessing is shown in the top right panel. The spectrum was derived from the 1H-13C GHMBC (bottom

            right panel – the C15 methylene correlations are within the red boxed region) and 3-8 Hz optimized 1H-15N IMPEACH

            spectra (top left panel). The 13C↔15N HMBC-IMPEACH correlation spectrum contains correlations to the N1 nitrogen

            resonance for all of the 13C resonances to which the 15-methylene protons are long-range coupled. In addition, there

            are also correlations from C3, C14, and C16 to both of the nitrogen resonances of the vincamine (1) skeleton, which

            could be beneficial in the structural characterization of an unknown. In comparison with the 13C↔15N HSQC-

            IMPEACH spectrum shown in Figure 1, which affords 13C↔15N correlations across up to three bonds, the 13C↔15N

            HMBC-IMPEACH spectrum can span up to four bonds via the long-range 1H-13C correlations in the GHMBC

            spectrum plus three and in some cases four additional bonds via the long-range 1H-15N coupling pathways in the 1H-15N

            IMPEACH spectrum providing experimental access across 6 or more bonds.




                                                              15
9                           6

            10              8             7             5

                                                 H
            11              13            2             N
                                                        4
                      12           N              3            19
                                    1

                     O              14            16           18

                            22            15            17

                                   OH             20

                            O                           CH 3
                                                        21
                  H 3C
                      23




Figure 5.    Long-range 1H-13C (black arrows) and 1H-15N (red arrows) correlation

             pathways observed in the GHMBC and IMPEACH-MBC spectra,

             respectively, of vincamine, 1. Responses in the 13C-15N HMBC-

             IMPEACH arise via the coherence transfer between proton and carbons in

             the GHMBC spectrum that are observed at the 15N shift (IMPEACH) to

             which the proton in question is long-range coupled. In the case of
             13
                  C15↔15N1 the correlation pathways are readily analyzed (Figure 3)

             since there is a single major 1H-15N coupling. In the case of the

             correlations to the N4 resonance, however, there are multiple potential

             pathways through which the long-range connectivity information from the

             HMBC experiment can be transferred to the nitrogen in the 13C-15N

             correlation spectrum.
Conclusions

         The 13C-15N HSQC-IMPEACH heteronuclear shift correlation data presented in

Figure 1 should be readily and directly applicable in structure elucidation studies of

alkaloids and other unknown, nitrogen-containing molecules and heterocycles. The

interpretation of the heteronuclear chemical shift correlation responses observed in a
13
     C↔15N HSQC-HMBC or 13C↔15N HSQC-IMPEACH spectrum is straightforward. In

contrast, it is more difficult to assess the potential utility of the 13C↔15N HMBC-

IMPEACH correlation spectrum in structure elucidation problems because of the multiple

potential correlation pathways that can lead to responses in the spectrum, for example the

correlation responses to the N4 resonance shown in Figure 5. In the long term, the
13
     C↔15N HMBC-IMPEACH heteronuclear shift correlation spectrum may be more

readily applicable in the confirmation of a partially established. We are exploring

potential applications of both types of experiments, which will serve as the basis of future

reports. We are also continuing to explore other potential means of employing

unsymmetrical indirect covariance processing methods to indirectly determine B ↔ C

coherence pathways from more readily measured A → B and A → C coherence transfer

experiments.




                                             17
References

1.    G. E. Martin, R. C. Crouch, and C. W. Andrews, J.Heterocyclic Chem. 1995; 32:

      1665.

2.    H. Koshino and J. Uzawa, Kagaku to Seibutsu 1995; 33: 252.

3.    G. E. Martin and C. E. Hadden, J. Nat. Prod. 2000; 65: 543.

4.    R. Marek and A. Lyčka, Curr. Org. Chem. 2002; 6: 35.

5.    G. E. Martin and A. J. Williams, “Long-Range 1H-15N 2D NMR Methods,” in

      Ann. Rep. NMR Spectrosc., vol. 55, G. A. Webb, Ed., Elsevier, Amsterdam,

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6.    P. Forgo, J. Homann, G. Dombi, and L. Máthé, “Advanced Multidimensional

      NMR Experiments as Tools for Structure Determination of Amaryllidaceae

      Alkaloids,” in Poisonous Plants and Related Toxins, T. Acamovic, S. Steward and

      T. W. Pennycott, Eds., Wallingford, UK, 2004, pp. 322-328.

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      Alkaloid Chemistry,” in Modern Alkaloids, E. Fattorusso and O. Taglialatela-

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8.    M. Pérez-Trujillo, P. Nolis, and T. Parella, Org. Lett. 2007: 9: 29.

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12.   K. A. Blinov, N. I. Larin, M. P. Kvasha, A. Moser, A. J. Williams, and G. E.

      Martin, Magn. Reson. Chem. 2005; 43: 999.




                                           18
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14.   K. A. Blinov, N. I. Larin, A. J. Williams, K. A. Mills, and G. E. Martin, J.

      Heterocyclic Chem. 2006; 43: 163.

15.   G. E. Martin, K. A. Blinov, and A. J. Williams, J. Nat. Prod., 2007, submitted .

16.   K. A. Blinov, A. J. Williams, B. D. Hilton, P. A. Irish, and G. E. Martin, Magn.

      Reson. Chem. 2007; 45: in press.

17.   G. E. Martin, P. A. Irish, B. D. Hilton, K. A. Blinov, and A. J. Williams, Magn.

      Reson. Chem., 2007; 45: in press..

18.   G. E. Martin, B. D. Hilton, P. A. Irish, K. A. Blinov, and A. J. Williams, J.

      Heterocyclic Chem., 2007, submitted.

19.   G. E. Martin, J. Heterocyclic Chem. 1997; 34: 695.

20.   C. E. Hadden, G. E. Martin, and V. V. Krishnamurthy, Magn. Reson. Chem.

      2000; 38: 143.

21.   A. Bax, R. Freeman, and S. P. Kempsell, J. Am. Chem. Soc., 1980; 102: 4849.

22.   M. Köck, R. Kerssebaum, and W. Bermel, Magn. Reson. Chem. 2003; 41: 65.



23.   J. Cavanaugh, W. J. Fairbrother, A. G. Palmer, III, N. J. Skelton, and M. Rance,

      Protein NMR Spectroscopy: Principles and Practice, 2nd edition, Academic Press,

      New York City, 2006.

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                                           19
27.   E. Kupče and R. Freeman, J. Am. Chem. Soc. 2006; 128: 6020.




                                       20

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Application of Unsymmetrical Indirect Covariance NMR Methods to the Computation of the 13C↔15N HSQC-IMPEACH and 13C↔15N HMBC-IMPEACH Correlation Spectra

  • 1. Application of Unsymmetrical Indirect Covariance NMR Methods to the Computation of the 13C↔15N HSQC-IMPEACH and 13 C↔15N HMBC-IMPEACH Correlation Spectra Gary E. Martin,* Bruce D. Hilton, and Patrick A. Irish Rapid Structure Characterization Laboratory Pharmaceutical Sciences Schering-Plough Research Institute Summit, NJ 07059 Kirill A. Blinov Advanced Chemistry Development Moscow Division Moscow 117504 Russian Federation Antony J. Williams Advanced Chemistry Development Toronto, Ontario M5C 1T4 Canada Keywords: unsymmetrical indirect covariance, 13C-15N heteronuclear correlation, 1H- 13 C GHSQC, 1H-13C GHMBC, 1H-15N IMPEACH-MBC, 13C-15N HSQC- IMPEACH, 13C-15N HMBC-IMPEACH 13 Running Title: C-15N Heteronuclear Shift Correlation * To whom inquiries should be addressed gary.martin@spcorp.com Schering-Plough Research Institute Rapid Structure Characterization Laboratory 556 Morris Ave Summit, NJ 07901 +908.473.5398 +908.473-6559 (fax) 1
  • 2. Abstract Utilization of long-range 1H-15N heteronuclear chemical shift correlation has continually grown in importance since the first applications were reported in 1995. More recently, indirect covariance NMR methods have been introduced followed by the development of unsymmetrical indirect covariance processing methods. The latter technique has been shown to allow the calculation of hyphenated 2D NMR data matrices from more readily acquired non-hyphenated 2D NMR spectra. We recently reported the use of unsymmetrical indirect covariance processing to combine 1H-13C GHSQC and 1H-15N GHMBC long-range spectra to yield a 13C-15N HSQC-HMBC chemical shift correlation spectrum that could not be acquired in a reasonable period of time without resorting to 15 N-labeled molecules. We now report the unsymmetrical indirect covariance processing of 1H-13C GHMBC and 1H-15N IMPEACH spectra to afford a 13C-15N HMBC- IMPEACH spectrum that has the potential to span as many as 6 to 8 bonds. Correlations for carbon resonances long-range coupled to a protonated carbon in the 1H-13C HMBC spectrum are transferred via the long-range 1H-15N coupling pathway in the 1H-15N IMPEACH spectrum to afford a much broader range of correlation possibilities in the 13 C-15N HMBC-IMPEACH correlation spectrum. The indole alkaloid vincamine is used as a model compound to illustrate the application of the method. 2
  • 3. Introduction Long-range 1H-15N 2D NMR methods have become important tools in structure elucidation since the first experiments were reported at natural abundance in 1995.1,2 Long-range 1H-15N methods have been reviewed several times.3-7 The acquisition of long-range 1H-15N data has become sufficiently prevalent that several pulse sequences have recently been reported that allow the simultaneous acquisition of 1H-13C and 1H-15N GHMBC spectra.8,9 Recently, another new area of investigation, covariance NMR spectroscopy, has been receiving considerable attention.10,11 The work of greatest applicability to small molecule spectroscopy is probably the 2004 communication of Zhang and Brüschweiler that described the calculation of a 13C-13C homonuclear correlation spectrum derived from an HSQC-TOCSY spectrum.11 That communication stimulated our analysis of artifacts that occur in the indirect covariance processed spectra due to proton resonance overlaps in the F2 frequency domain.12 In an effort to eliminate artifacts, we also reported the development of unsymmetrical indirect covariance processing, a method that allows a pair of 2D NMR data matrices to be coprocessed. In the case of inverted direct response HSQC-TOCSY spectra, the negative direct response component of the data can be coprocessed with the positive relayed response component affording a covariance spectrum in which one type of overlap artifact is eliminated and the second is diagonally asymmetrical, allowing those responses to be eliminated by conventional symmetrization. We have subsequently shown that unsymmetrical indirect covariance processing can also be used to coprocess discretely acquired 2D NMR spectra to afford spectra corresponding to various 2D-NMR experiments such as m,n-ADEQUATE,13 HSQC-COSY,14,15 and 3
  • 4. most recently, HSQC-NOESY.16 In a further extension of the unsymmetrical indirect covariance processing method, we recently reported the application of the technique in the computation of 13C-15N correlation spectra through the mathematical combination of multiplicity-edited 1H-13C GHSQC and 1H-15N GHMBC spectra.17,18 We now wish to communicate the results we have obtained for the alkaloid vincamine (1), which was previously studied by long-range 1H-15N GHMBC methods.19 Specifically, we wish to contrast the results obtained by unsymmetrical coprocessing of 1H-13C GHSQC and 1H- 15 N IMPEACH spectra with those obtained by coprocessing 1H-13C GHMBC and 1H-15N IMPEACH-MBC (1H-15N IMPEACH hereafter) to the latter coprocessed spectra providing a spectrum that can be described as a 13C-15N HMBC-IMPEACH correlation matrix. 9 6 10 8 7 5 H 11 13 2 N 4 12 N 3 1 O 14 16 18 21 15 17 OH 19 O CH 3 20 H 3C 22 1 Experimental All NMR data were recorded using a sample prepared by dissolving approximately 10 mg of vincamine dissolved in ~180 μL d6-DMSO, after which the solution was transferred via a Teflon™ (Hamilton) needle to a 3 mm NMR tube 4
  • 5. (Wilmad). All of the data were acquired using a Varian three channel 500 MHz NMR spectrometer equipped with a gradient inverse triple resonance NMR probe. Spectra were recorded with identical F2 (proton) spectral widths. The 1H-13C GHSQC spectrum was acquired as 1024 x 96 data points; the 10 Hz 1H-13C GHMBC data were recorded as 2048 x 160 data points; and the 1H-15N IMPEACH-MBC data were recorded as 1024 x 96 data points. The multiplicity-edited GHSQC and GHMBC pulse sequences used were directly from the Varian pulse sequence library. The IMPEACH-MBC pulse sequence used was that described by Hadden, Martin, and Krishnamurthy20 without any further modification. All three of the 2D NMR data sets were processed to afford final spectra consisting of 2048 x 512 points. The data were linear predicted in the 2 nd dimension to twice the number of acquired points followed by zero-filling to 512 points prior to Fourier transformation. The unsymmetrical indirect covariance processing was performed using ACD/Labs SpecManager v10.02. The approximate computation time was ~5 s on a Dell Latitude D610 computer with 1 Gb of RAM and a 1.7 GHz processor. The unsymmetrical indirect covariance matrix can be calculated by C = RN * RCT [1] where RN and RC correspond to the real data matrices from the long-range 1H-15N GHMBC and 1H-13C multiplicity-edited GHSQCAD spectra, respectively. In the present report, the GHSQCAD data are plotted with CH and CH 3 resonances with positive phase and CH2 resonances with negative phase. The 1H-13C data matrix is transposed to RCT during processing. The data were acquired and processed so that there were equal 5
  • 6. numbers of columns in the data sets, i.e. RN is N * M1 and RC is N * M2 to allow the multiplication of the data matrices. In the present example, F2 spectral widths were identical although that is not an absolute requirement. By definition, the following formula is used to calculate each element Cij (i and j are row indices in the initial matrices, correspondingly, RN and RC) of data matrix C: Cij = (RN)ij * [(RC)ij]T = (RN)i1 * (RC)j1 + (RN)i2 * (RC)j2 + … + (RN)iN * (RC)jN [2] Each element of matrix C is the sum of products of values (RN)ik and (RC)jk. A necessary condition is to have non-zero elements in equivalent positions in the rows of (RN)i and (RC)j. For two “ideal” 2D NMR spectra, assuming zero noise in the data matrices, the sum of a matrix element will be non-zero when rows (RN)i and (RC)j have crosspeaks in the same position. Results and Discussion The application of unsymmetrical indirect covariance processing to combine discretely acquired 2D NMR spectra arose from an investigation of artifacts in 13C-13C correlation plots that arise from indirect covariance processed inverted direct response (IDR) GHSQC-TOCSY spectra.13 Significant time savings have been demonstrated in the calculation of GHSQC-COSY14,15 and GHSQC-NOESY16 as compared to the direct acquisition of these data via the hyphenated 2D NMR experiments. For experiments such as 13C-13C INADEQUATE21 or m,n-ADEQUATE,22 the equivalent data matrix calculated by combining 1H-13C GHSQC and GHMBC spectra13 allows even greater spectrometer 6
  • 7. time savings to be realized because of the low statistical probability (1:10,000) of two 13C nuclides being in the structure of a single molecule. At natural abundance, 13C-15N experiments are hampered by even lower statistical probability because of the 0.37% natural abundance of 15N vs. 13C at 1.1 %. Based on relative natural abundance, the probability of a 13C and 15N being in the same molecule is slight, ~1:27,000. The likelihood of 13C and 15N being in positions in a given structure and amenable to correlation via 1JCN or nJCN where n = 2-4 is, of course, correspondingly lower. Consequently, direct and long-range 13C -15N experiments have not been reported to date, although experiments of this type are quite important in the study of 13C/15N doubly labeled proteins.23 We were thus very interested in exploring the combination of 1H-13C and 1H-15N 2D NMR experiments via unsymmetrical indirect covariance methods. Our first investigation along these lines yielded a 13C-15N long-range correlation plot for strychnine calculated from a multiplicity-edited 1H-13C GHSQC spectrum and a 1H-15N GHMBC spectrum.16 It has been shown previously that 1H-15N IMPEACH-MBC24 and CIGAR-HMBC25 experiments provide better experimental access to long-range 1H-15N correlation information because of the accordion-optimization of the long-range magnetization transfer delay. Using an approximately 10 mg sample of vincamine (1) dissolved in 180 μL d6- DMSO, 1H-13C GHSQC and 1H-15N IMPEACH-MBC (3-8 Hz optimized) spectra were acquired and processed to yield identically digitized 2D NMR data matrices in the F2 frequency domain. The data sets were also equivalently digitized in the F1 frequency domain although this is not a requirement for the unsymmetrical indirect covariance processing algorithm (ACD/Labs SpecManager v10.02). 7
  • 8. 13 C↔15N HSQC-IMPEACH Discretely acquired coherence transfer experiments of the type A → B and A → C can be manipulated to indirectly afford a B ↔ C correlation spectrum using unsymmetrical indirect covariance processing techniques as in our previous work13-18 or using projection reconstruction methods described by Kupče and Freeman.9,26,27 Figure 1 shows the multiplicity-edited 1H-13C HSQC and the 3-8 Hz optimized 1H-15N IMPEACH spectra flanking the 13C↔15N HSQC-IMPEACH correlation spectrum indirectly calculated by unsymmetrical indirect covariance processing. Responses arising via 2JNH couplings correspond to direct 13C↔15N correlations; responses arising via 3JNH and 4JNH heteronuclear coupling pathways correspond to 2JCN and 3JCN correlation responses, respectively. All of the expected 13C↔15N correlations based on the correlations observed in the 1H-15N IMPEACH spectrum are observed in the 13C↔15N HSQC-IMPEACH correlation spectrum with the exception of a correlation for the 14- hydroxyl proton. The 14-hydroxyl proton is not directly bound to a 13C resonance and hence cannot yield a correlation response in the 13C↔15N HSQC-IMPEACH correlation spectrum. The phase of the responses in the 13C↔15N HSQC-IMPEACH correlation spectrum is defined by the multiplicity-editing of the 1H-13C GHSQC spectrum. Responses correlating methylene carbons to nitrogen are inverted and displayed in red; responses correlating methine and methyl (none of the latter occur in the structure of vincamine) carbons to nitrogen are positive and plotted in black. It should also be noted that the 3-8 Hz optimized 1H-15N IMPEACH spectrum of vincamine (1) contains several responses not observed in the 10 Hz optimized GHMBC spectrum previously reported. 19 8
  • 9. N4 40 40 C19 C18 C6 C3 C5 F1 Chemic al Shift (ppm) F1 Chemic al Shift (ppm) 60 60 80 80 100 100 120 120 C11 C12 C15 140 N1 140 8 7 6 5 4 3 2 1 120 100 80 60 40 20 0 F2 Chemical Shif t (ppm ) C18 1 C15 C17 C19 C6 2 C5 F2 Chemic al Shift (ppm) 3 C3 4 5 6 7 120 100 80 60 40 20 0 F1 Chemical Shif t (ppm ) Figure 1. 9
  • 10. Figure 1. The 13C↔15N HSQC-IMPEACH correlation spectrum of vincamine (1) obtained via the unsymmetrical indirect covariance coprocessing is shown in the top right panel. The spectrum was derived from the multiplicity-edited 1H-13C GHSQC (bottom right panel) and 3-8 Hz optimized 1H-15N IMPEACH spectra (top left panel). The main body of the 13 C↔15N HSQC-IMPEACH spectrum was plotted with a 3% threshold value. The boxed regions were plotted with a 0.7 % threshold to minimize t1 noise in the F1 frequency domain from the more intense correlation responses. The correlation from the 14-hydroxyl proton to the N1 indole nitrogen is not observed in the 13C↔15N HSQC-IMPEACH spectrum since this proton is not directly bound to a carbon resonance. The phase of responses in the 13C↔15N HSQC- IMPEACH is governed by the multiplicity-editing of the 1H-13C GHSQC spectrum used in the unsymmetrical indirect covariance processing. Methylene resonances are plotted in red and have negative phase; methine and methyl (none of the latter afford responses in the 13C↔15N spectrum of vincamine) have positive phase and are plotted in black. 10
  • 11. 9 6 10 8 7 5 H 11 13 2 N 4 12 N 3 19 1 O 14 16 18 22 15 17 OH 20 O CH 3 21 H 3C 23 Figure 2. Correlations observed in the 13C↔15N HSQC-IMPEACH spectrum of vincamine (1). The correlation from the 14-hydroxyl resonance (red arrow) is not observed in the 13C↔15N correlation spectrum since this proton is not directly bound to a 13C resonance. Correlations observed in the 13C↔15N HSQC-IMPEACH correlation spectrum are summarized on the structure shown in Figure 2. In the context of the 13C↔15N HMBC- IMPEACH discussed below, it is worth noting that the there are no correlations observed in the 13C↔15N HSQC-IMPEACH spectrum that link the two nitrogen resonances, which would be desirable if this were an unknown structure in the process of being elucidated. 13 C↔15N HMBC-IMPEACH The absence of an intense correlation such as the 14-hydroxyl proton to the N1 resonance, in conjunction with a desire to experimentally access a larger segment of the 11
  • 12. molecular structure prompted the exploration of the combination of 1H-13C HMBC and 1 H-15N IMPEACH 2D NMR experiments via unsymmetrical indirect covariance processing methods. While we have employed 1H-15N IMPEACH data set in this study, any long-range 1H-15N correlation experiment can be employed. A fundamental premise of calculating a 13C↔15N HMBC-IMPEACH correlation data matrix was to explore the transfer of long-range 1H-13C connectivity information from a given proton resonance in the 1H-13C HMBC to 15N in the final 13C↔15N HMBC- IMPEACH spectrum. As an example, consider the extensive long-range 1H-13C correlations observed for the 15-methylene AB spin system in the GHMBC spectrum of vincamine (1) summarized in Figure 3. Examining the N1 chemical shift in the 13C↔15N HMBC-IMPEACH spectrum shown in Figure 4 (top right panel) we note that all of the long-range correlations anticipated (Figure 3) are indeed observed in the 13C↔15N correlation spectrum, including a correlation to the C3 resonance, which is pivotally located between the N1 and N4 resonances of vincamine, and thus capable of potentially providing the means of linking the two nitrogens in the carbon skeleton. A weak correlation is also observed for the C15 methylene resonance, which must be transferred to N1 via some long-range 1H- 15 N coupling pathway, most probably a 3JNH coupling from H3 to N1. The weak correlations from C11 and C12 to N1 observed in Figure 1 are not observed in the 13 C↔15N HMBC-IMPEACH spectrum shown in Figure 4. By combining the long-range couplings of a 1H-13C GHMBC experiment, which can routinely span two to four bonds, with those of a 1H-15N IMPEACH experiment, which typically spans two or three bonds, an investigator has the means of visualizing 12
  • 13. correlations across five or more bonds directly in the 13C↔15N HMBC-IMPEACH spectrum. In comparison, the same connectivity information can be indirectly extracted from the contributing 2D NMR spectra. 9 6 10 8 7 5 H 11 13 2 N 4 12 N 3 19 1 O 14 16 18 22 15 17 OH 20 O CH 3 21 H 3C 23 Figure 3. Long-range 1H-13C correlations observed from the 15-methylene AB spin system in the 1H-13C GHMBC spectrum of vincamine (1). 1H-13C long- range correlations are denoted by black arrows; the correlation from C15 ↔ N1 is denoted by the red arrow. 13
  • 14. 20 20 N4 40 40 C7 C14 C3 C6 C16 F1 Chemical Shift (ppm) F1 Chemical Shift (ppm) 60 C15 60 C20 or C19 80 80 100 100 C16 120 C15 C20 120 C3 C22 C13 C14 140 N1 C17 140 8 7 6 5 4 3 2 1 0 150 100 50 0 F2 Chemical Shif t (ppm) F2 Chemical Shif t (ppm) 1 C15 2 F2 Chemical Shift (ppm) 3 4 5 6 7 150 100 50 0 F1 Chemical Shif t (ppm) Figure 4. 14
  • 15. Figure 4. The 13C↔15N HMBC-IMPEACH correlation spectrum of vincamine (1) obtained via the unsymmetrical indirect covariance coprocessing is shown in the top right panel. The spectrum was derived from the 1H-13C GHMBC (bottom right panel – the C15 methylene correlations are within the red boxed region) and 3-8 Hz optimized 1H-15N IMPEACH spectra (top left panel). The 13C↔15N HMBC-IMPEACH correlation spectrum contains correlations to the N1 nitrogen resonance for all of the 13C resonances to which the 15-methylene protons are long-range coupled. In addition, there are also correlations from C3, C14, and C16 to both of the nitrogen resonances of the vincamine (1) skeleton, which could be beneficial in the structural characterization of an unknown. In comparison with the 13C↔15N HSQC- IMPEACH spectrum shown in Figure 1, which affords 13C↔15N correlations across up to three bonds, the 13C↔15N HMBC-IMPEACH spectrum can span up to four bonds via the long-range 1H-13C correlations in the GHMBC spectrum plus three and in some cases four additional bonds via the long-range 1H-15N coupling pathways in the 1H-15N IMPEACH spectrum providing experimental access across 6 or more bonds. 15
  • 16. 9 6 10 8 7 5 H 11 13 2 N 4 12 N 3 19 1 O 14 16 18 22 15 17 OH 20 O CH 3 21 H 3C 23 Figure 5. Long-range 1H-13C (black arrows) and 1H-15N (red arrows) correlation pathways observed in the GHMBC and IMPEACH-MBC spectra, respectively, of vincamine, 1. Responses in the 13C-15N HMBC- IMPEACH arise via the coherence transfer between proton and carbons in the GHMBC spectrum that are observed at the 15N shift (IMPEACH) to which the proton in question is long-range coupled. In the case of 13 C15↔15N1 the correlation pathways are readily analyzed (Figure 3) since there is a single major 1H-15N coupling. In the case of the correlations to the N4 resonance, however, there are multiple potential pathways through which the long-range connectivity information from the HMBC experiment can be transferred to the nitrogen in the 13C-15N correlation spectrum.
  • 17. Conclusions The 13C-15N HSQC-IMPEACH heteronuclear shift correlation data presented in Figure 1 should be readily and directly applicable in structure elucidation studies of alkaloids and other unknown, nitrogen-containing molecules and heterocycles. The interpretation of the heteronuclear chemical shift correlation responses observed in a 13 C↔15N HSQC-HMBC or 13C↔15N HSQC-IMPEACH spectrum is straightforward. In contrast, it is more difficult to assess the potential utility of the 13C↔15N HMBC- IMPEACH correlation spectrum in structure elucidation problems because of the multiple potential correlation pathways that can lead to responses in the spectrum, for example the correlation responses to the N4 resonance shown in Figure 5. In the long term, the 13 C↔15N HMBC-IMPEACH heteronuclear shift correlation spectrum may be more readily applicable in the confirmation of a partially established. We are exploring potential applications of both types of experiments, which will serve as the basis of future reports. We are also continuing to explore other potential means of employing unsymmetrical indirect covariance processing methods to indirectly determine B ↔ C coherence pathways from more readily measured A → B and A → C coherence transfer experiments. 17
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