SlideShare ist ein Scribd-Unternehmen logo
1 von 1
Fab libraries, in which light-chain (LC) and heavy-chain (HC)
variable region genes are cloned into a phagemid vector and
subsequently displayed on the surface of the filamentous phage
particle, have been widely used for the isolation of antibodies
(Abs) with specificity for haptens, foreign antigens (Ags), and self
Ags. Immune Fab libraries, in which lymphoid tissue from
individuals who, perhaps because of disease, have mounted an
immune response to particular Ags, have been used in the
recovery of Fabs with binding specificity for a number of clinically
relevant Ags including c-erbB-2 and p53. Fab libraries are thus
valuable as a means whereby the genes for Abs of interest can
be immortalized and propagated. This enables information to be
gathered regarding the Ab, including structural features, V-gene
usage, and the nature of the immune response in the individual.
Additionally, the isolated Abs can be used to evaluate
immunogenic epitope(s) of the Ag. Furthermore, the Abs
themselves provide potentially useful diagnostic or therapeutic
agents. The isolation of Fabs from combinatorial libraries is thus
valuable in contributing to the understanding of Ab–Ag
interactions, as well as the nature of the in vivo immune response.
Making Every Possibility in Lifescience! www.alphalifetech.com +1-609-736-0910
info@alphalifetech.com
Ocean City, NJ 08226, USA
Fab Library Platform Team
ALPHA LIFETECH INC.
Fig 1 Panning of an antibody phage display library
for the generation of high-affinity antibodies
1. Starting with the extraction of mRNA from B-cells isolated
from blood, spleen, tonsils, and tumor tissue samples.
2. Using oligo (dt) primers or random primers, cDNA is
synthesized from mRNA through reverse transcription-
polymerase chain reaction.
3. Defined PCR primer sets, designed on the basis of species
consensus sequence and anneal to the conserved region
of V-gene families or constant domain, are used to amplify
the heavy chain and light chain corresponding region (VH,
CH, VL and CL, respectively) genes within a given
immunoglobulin repertoire from cDNA pools, thus revealing
the all antibody specificities in a particular individual.
4. The PCR-amplified VH-CH and VL-CL gene fragments are
ligated in a suitable phagemid for Fab library generation,
respectively.
5. In the case of synthetic antibody phage libraries, the initial
few steps are not needed, and library diversity is increased
through the precise introduction of degenerate DNA into
CDR encoding regions, thus rivaling or exceeding than that
of natural immune repertoire.
6. The engineered phagemids are transformed into suitable
bacteria (e.g. TG1), providing a suitable environment for
recombination of antibody fragments.
7. For rescuing the recombinant phagemid harboring the
gene of inserts like Fab, the transformed bacteria are
infected with helper phages like M13 that are well-adapted
for the exposition of antibody-variable scaffolds.
8. This results in a library of phages, where each phage is
expressing a unique antibody fragment on its surface as a
phenotype while possessing the vector with specific
nucleotide sequences within as respective genotypes.
9. The antigen is presented in its native form either
immobilized on a plastic surface or expressed on the cell
surface.
10. Antibody library displaying phages are incubated with
antigen, and non-bound or weakly bound phages are
removed by washing.
11. The tightly bound phages are recovered by elution via
trypsin or pH shift for the re-infection of E. coli cells.
12. Following the coinfection with helper phages, new phage
particles are produced for usage in subsequent rounds of
panning. This cycle continues for 3–4 rounds, leading to
enrichment of binders.

Weitere ähnliche Inhalte

Ähnlich wie Fab library construction protocol.pdf

Genomic library
Genomic libraryGenomic library
Genomic library
Sumit Sah
 
Antibody Structure & Function
Antibody Structure & FunctionAntibody Structure & Function
Antibody Structure & Function
raj kumar
 

Ähnlich wie Fab library construction protocol.pdf (20)

Antibody&antigen faq
Antibody&antigen faq Antibody&antigen faq
Antibody&antigen faq
 
Antibody avidity
Antibody avidityAntibody avidity
Antibody avidity
 
DNA Library
DNA LibraryDNA Library
DNA Library
 
DNA libraries
DNA librariesDNA libraries
DNA libraries
 
Molecular Cloning.pptx
Molecular Cloning.pptxMolecular Cloning.pptx
Molecular Cloning.pptx
 
Library screening
Library screeningLibrary screening
Library screening
 
Gene Cloning Vectors - Plasmids, Bacteriophages and Phagemids.
Gene Cloning Vectors - Plasmids, Bacteriophages and Phagemids.Gene Cloning Vectors - Plasmids, Bacteriophages and Phagemids.
Gene Cloning Vectors - Plasmids, Bacteriophages and Phagemids.
 
Genomic library
Genomic libraryGenomic library
Genomic library
 
PDC Libraries
PDC LibrariesPDC Libraries
PDC Libraries
 
ncomms8077
ncomms8077ncomms8077
ncomms8077
 
Phage display orginal
Phage display orginalPhage display orginal
Phage display orginal
 
Artificial chromosomes - YAC and BAC
Artificial chromosomes - YAC and BACArtificial chromosomes - YAC and BAC
Artificial chromosomes - YAC and BAC
 
Application1
Application1Application1
Application1
 
Yeast Artificial Chromosome (YAC)
Yeast Artificial Chromosome (YAC)Yeast Artificial Chromosome (YAC)
Yeast Artificial Chromosome (YAC)
 
General structure of Antibody and its functions ppt
General structure of Antibody and its functions pptGeneral structure of Antibody and its functions ppt
General structure of Antibody and its functions ppt
 
IMMUNOGLOBULINS
IMMUNOGLOBULINSIMMUNOGLOBULINS
IMMUNOGLOBULINS
 
Antibody Structure & Function
Antibody Structure & FunctionAntibody Structure & Function
Antibody Structure & Function
 
Increased Fab thermoresistance via VH-targeted directed evolution
Increased Fab thermoresistance via VH-targeted directed evolutionIncreased Fab thermoresistance via VH-targeted directed evolution
Increased Fab thermoresistance via VH-targeted directed evolution
 
Epitopes and structure of antibodies.pptx
Epitopes and structure of antibodies.pptxEpitopes and structure of antibodies.pptx
Epitopes and structure of antibodies.pptx
 
ODD for human blood-M. Asif
ODD for human blood-M. AsifODD for human blood-M. Asif
ODD for human blood-M. Asif
 

Kürzlich hochgeladen

Why Teams call analytics are critical to your entire business
Why Teams call analytics are critical to your entire businessWhy Teams call analytics are critical to your entire business
Why Teams call analytics are critical to your entire business
panagenda
 

Kürzlich hochgeladen (20)

Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost SavingRepurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
 
2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...
 
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, AdobeApidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
 
presentation ICT roal in 21st century education
presentation ICT roal in 21st century educationpresentation ICT roal in 21st century education
presentation ICT roal in 21st century education
 
Why Teams call analytics are critical to your entire business
Why Teams call analytics are critical to your entire businessWhy Teams call analytics are critical to your entire business
Why Teams call analytics are critical to your entire business
 
Apidays New York 2024 - The value of a flexible API Management solution for O...
Apidays New York 2024 - The value of a flexible API Management solution for O...Apidays New York 2024 - The value of a flexible API Management solution for O...
Apidays New York 2024 - The value of a flexible API Management solution for O...
 
Strategies for Landing an Oracle DBA Job as a Fresher
Strategies for Landing an Oracle DBA Job as a FresherStrategies for Landing an Oracle DBA Job as a Fresher
Strategies for Landing an Oracle DBA Job as a Fresher
 
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
Mastering MySQL Database Architecture: Deep Dive into MySQL Shell and MySQL R...
 
AWS Community Day CPH - Three problems of Terraform
AWS Community Day CPH - Three problems of TerraformAWS Community Day CPH - Three problems of Terraform
AWS Community Day CPH - Three problems of Terraform
 
Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024
 
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
 
GenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdfGenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdf
 
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemkeProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
 
Data Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt RobisonData Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt Robison
 
Real Time Object Detection Using Open CV
Real Time Object Detection Using Open CVReal Time Object Detection Using Open CV
Real Time Object Detection Using Open CV
 
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
 
MINDCTI Revenue Release Quarter One 2024
MINDCTI Revenue Release Quarter One 2024MINDCTI Revenue Release Quarter One 2024
MINDCTI Revenue Release Quarter One 2024
 
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...
Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...Workshop - Best of Both Worlds_ Combine  KG and Vector search for  enhanced R...
Workshop - Best of Both Worlds_ Combine KG and Vector search for enhanced R...
 
Apidays Singapore 2024 - Building Digital Trust in a Digital Economy by Veron...
Apidays Singapore 2024 - Building Digital Trust in a Digital Economy by Veron...Apidays Singapore 2024 - Building Digital Trust in a Digital Economy by Veron...
Apidays Singapore 2024 - Building Digital Trust in a Digital Economy by Veron...
 
Polkadot JAM Slides - Token2049 - By Dr. Gavin Wood
Polkadot JAM Slides - Token2049 - By Dr. Gavin WoodPolkadot JAM Slides - Token2049 - By Dr. Gavin Wood
Polkadot JAM Slides - Token2049 - By Dr. Gavin Wood
 

Fab library construction protocol.pdf

  • 1. Fab libraries, in which light-chain (LC) and heavy-chain (HC) variable region genes are cloned into a phagemid vector and subsequently displayed on the surface of the filamentous phage particle, have been widely used for the isolation of antibodies (Abs) with specificity for haptens, foreign antigens (Ags), and self Ags. Immune Fab libraries, in which lymphoid tissue from individuals who, perhaps because of disease, have mounted an immune response to particular Ags, have been used in the recovery of Fabs with binding specificity for a number of clinically relevant Ags including c-erbB-2 and p53. Fab libraries are thus valuable as a means whereby the genes for Abs of interest can be immortalized and propagated. This enables information to be gathered regarding the Ab, including structural features, V-gene usage, and the nature of the immune response in the individual. Additionally, the isolated Abs can be used to evaluate immunogenic epitope(s) of the Ag. Furthermore, the Abs themselves provide potentially useful diagnostic or therapeutic agents. The isolation of Fabs from combinatorial libraries is thus valuable in contributing to the understanding of Ab–Ag interactions, as well as the nature of the in vivo immune response. Making Every Possibility in Lifescience! www.alphalifetech.com +1-609-736-0910 info@alphalifetech.com Ocean City, NJ 08226, USA Fab Library Platform Team ALPHA LIFETECH INC. Fig 1 Panning of an antibody phage display library for the generation of high-affinity antibodies 1. Starting with the extraction of mRNA from B-cells isolated from blood, spleen, tonsils, and tumor tissue samples. 2. Using oligo (dt) primers or random primers, cDNA is synthesized from mRNA through reverse transcription- polymerase chain reaction. 3. Defined PCR primer sets, designed on the basis of species consensus sequence and anneal to the conserved region of V-gene families or constant domain, are used to amplify the heavy chain and light chain corresponding region (VH, CH, VL and CL, respectively) genes within a given immunoglobulin repertoire from cDNA pools, thus revealing the all antibody specificities in a particular individual. 4. The PCR-amplified VH-CH and VL-CL gene fragments are ligated in a suitable phagemid for Fab library generation, respectively. 5. In the case of synthetic antibody phage libraries, the initial few steps are not needed, and library diversity is increased through the precise introduction of degenerate DNA into CDR encoding regions, thus rivaling or exceeding than that of natural immune repertoire. 6. The engineered phagemids are transformed into suitable bacteria (e.g. TG1), providing a suitable environment for recombination of antibody fragments. 7. For rescuing the recombinant phagemid harboring the gene of inserts like Fab, the transformed bacteria are infected with helper phages like M13 that are well-adapted for the exposition of antibody-variable scaffolds. 8. This results in a library of phages, where each phage is expressing a unique antibody fragment on its surface as a phenotype while possessing the vector with specific nucleotide sequences within as respective genotypes. 9. The antigen is presented in its native form either immobilized on a plastic surface or expressed on the cell surface. 10. Antibody library displaying phages are incubated with antigen, and non-bound or weakly bound phages are removed by washing. 11. The tightly bound phages are recovered by elution via trypsin or pH shift for the re-infection of E. coli cells. 12. Following the coinfection with helper phages, new phage particles are produced for usage in subsequent rounds of panning. This cycle continues for 3–4 rounds, leading to enrichment of binders.