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Translation is the RNA-Directed
Synthesis of a Polypeptide
William Chen
Maggie McCormick
Esther Park
Molecular Components of Translation
• tRNA (transfer RNA) the function is to literally
  transfer amino acids.
• The one end of the tRNA is a anticodon (a
  nucleotide triplet). TRANSCRIPTION       DNA
                                           mRNA
                                            Ribosome
                       TRANSLATION
                                        Polypeptide


                                                                                Amino
                                       Polypeptide                              acids
                                                                               tRNA with
                                                                               amino acid
                                                                      Ribosome attached
                                                                                Gly
                                                                                tRNA
                                                             A A A
                                                                                Anticodon
                                                       U G G U U U G G C

                             5                            Codons                   3
                                       mRNA
tRNA is Form = Function
• Transfer RNA (tRNA) molecules are transcribed
  from DNA templates.
• Two dimensional structure.Amino acid            3
                                                  A
                                                  C
                                attachment site
                                                 A 5
                                                 C G
                                                 G C
                                                 C G
                                                 U G
                                                 U A
                            U                    A U
                                      UC           U
                                    *    C A C AG A         AG *
                                   G                  * CUC     *
                                    C    G U GU *     CGAG      G
                                      **      UC *          AGG
                                              *GAGA C
                                                  G C Hydrogen
                                                  U A bonds
                                                  * G
                                                A * AC
                                                *
                                                A
                                                      U
                                                   AG
      Figure 17.14a                          Anticodon
• Three dimensional structure
                                               Amino acid
                                      5
                                             3attachment site
                                         Hydrogen
                                         bonds




                                                AAG
                                              3 5
                                              Anticodon
                                 Anticodon
                                             (c) Symbol used
              (b) Three-dimensional structure in this book
Accurate Translation
• There must be a correct match between a tRNA
  and an amino acid.
• Then there is an involvement of a correct match
  between the tRNA anticodon and a mRNA
  codon.
• The base pairing for tRNAs are not as strict as
  DNA or mRNA codons. This is called “wobble”
  where the third base pairing is more flexible
  than any other bases.
Ribosomes
• Facilitate the specific coupling of tRNA
  anticodons with mRNA codons during protein
  synthesis.
• There are tRNA, mRNA, and rRNA.
Translation : Building a Polypeptide
• Translation has 3 stages:
  ▫ Initiation
  ▫ Elongation
    Codon Recognition
    Peptide bond formation
    Translocation
  ▫ Termination
Initiation (requires GTP)
• During Initiation, Initiation factors bring
  mRNA, tRNA, and two ribosomes together.
• First, a ribosome binds to mRNA to a initiator
  tRNA.
• Then, the initiator tRNA hydrogen bonds with
  the start codon(AUG).
• After this, a large ribosomal subunit is attached
  and completes initiation.
Initiation(Pg.323)
Elongation
• Amino acids are added one by one. For every
  addition, a protein called elognation factors are
  involved.
• Codon Recognition(requires GTP)
• Peptide bond formation
• Translocation (requires GTP)
Elongation (Page 324)
          E site
                            A site



                   P site
Termination
• Elongation stops when the ribosome reaches a
  stop codon in the mRNA.
• UAG, UAA, and UGA are the triplets for stop
  codons.
• A protein called a release factor goes on the A
  site instead of a tRNA.
• The factor hydrolyzes the polypeptide from the
  tRNA and makes the polypeptide go to the exit
  tunnel.
• The tunnel then breaks down.
Termination(Pg.325)
Polyribosomes
• Once a ribosome moves past the start codon, a
  second ribosome may attach more than one
  ribosome. These are found in both eukaryotes
  and prokaryotes.
Completing and targeting the
functional protien
• Translation isnt sufficent enough to make a
  functional protien

• What it uses is…
 ▫ Protien folding
 ▫ Post-translational modifications
Protein Folding
• Polypeptide chains coil and fold to make a
  tertiary structure
Post-translational modifications
• Certain amino acids may be chemically modified
  by the attatchment of sugars, lipids phosphate
  groups and others
Targeting polypeptides to specific
locations
• Protien synthesis happens in both
  ▫ Free ribosomes (synthesize proteins that dissolve
    in the cytosol and function there)
  ▫ Bound ribosomes (synthesize proteins of the
    endomembrane system as well as proteins
    secreted from the cell)
Vocabulary
• Signal peptide – targets the protein to the ER
  (see figure 17.21)

• Signal-recognition particle (SRP) – a protein-
  RNA complex that recognizes a signal peptide as
  it emerges from the ribosome.
tRNA YOUTUBE IT!!!!
• http://www.youtube.com/watch?v=gE46bMA0
  Z14
• http://www.youtube.com/watch?v=Deie92DylR
  M

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Chapter 17.4

  • 1. Translation is the RNA-Directed Synthesis of a Polypeptide William Chen Maggie McCormick Esther Park
  • 2. Molecular Components of Translation • tRNA (transfer RNA) the function is to literally transfer amino acids. • The one end of the tRNA is a anticodon (a nucleotide triplet). TRANSCRIPTION DNA mRNA Ribosome TRANSLATION Polypeptide Amino Polypeptide acids tRNA with amino acid Ribosome attached Gly tRNA A A A Anticodon U G G U U U G G C 5 Codons 3 mRNA
  • 3. tRNA is Form = Function • Transfer RNA (tRNA) molecules are transcribed from DNA templates.
  • 4. • Two dimensional structure.Amino acid 3 A C attachment site A 5 C G G C C G U G U A U A U UC U * C A C AG A AG * G * CUC * C G U GU * CGAG G ** UC * AGG *GAGA C G C Hydrogen U A bonds * G A * AC * A U AG Figure 17.14a Anticodon
  • 5. • Three dimensional structure Amino acid 5 3attachment site Hydrogen bonds AAG 3 5 Anticodon Anticodon (c) Symbol used (b) Three-dimensional structure in this book
  • 6. Accurate Translation • There must be a correct match between a tRNA and an amino acid. • Then there is an involvement of a correct match between the tRNA anticodon and a mRNA codon. • The base pairing for tRNAs are not as strict as DNA or mRNA codons. This is called “wobble” where the third base pairing is more flexible than any other bases.
  • 7. Ribosomes • Facilitate the specific coupling of tRNA anticodons with mRNA codons during protein synthesis. • There are tRNA, mRNA, and rRNA.
  • 8. Translation : Building a Polypeptide • Translation has 3 stages: ▫ Initiation ▫ Elongation  Codon Recognition  Peptide bond formation  Translocation ▫ Termination
  • 9. Initiation (requires GTP) • During Initiation, Initiation factors bring mRNA, tRNA, and two ribosomes together. • First, a ribosome binds to mRNA to a initiator tRNA. • Then, the initiator tRNA hydrogen bonds with the start codon(AUG). • After this, a large ribosomal subunit is attached and completes initiation.
  • 11. Elongation • Amino acids are added one by one. For every addition, a protein called elognation factors are involved. • Codon Recognition(requires GTP) • Peptide bond formation • Translocation (requires GTP)
  • 12. Elongation (Page 324) E site A site P site
  • 13. Termination • Elongation stops when the ribosome reaches a stop codon in the mRNA. • UAG, UAA, and UGA are the triplets for stop codons. • A protein called a release factor goes on the A site instead of a tRNA. • The factor hydrolyzes the polypeptide from the tRNA and makes the polypeptide go to the exit tunnel. • The tunnel then breaks down.
  • 15. Polyribosomes • Once a ribosome moves past the start codon, a second ribosome may attach more than one ribosome. These are found in both eukaryotes and prokaryotes.
  • 16. Completing and targeting the functional protien • Translation isnt sufficent enough to make a functional protien • What it uses is… ▫ Protien folding ▫ Post-translational modifications
  • 17. Protein Folding • Polypeptide chains coil and fold to make a tertiary structure
  • 18. Post-translational modifications • Certain amino acids may be chemically modified by the attatchment of sugars, lipids phosphate groups and others
  • 19. Targeting polypeptides to specific locations • Protien synthesis happens in both ▫ Free ribosomes (synthesize proteins that dissolve in the cytosol and function there) ▫ Bound ribosomes (synthesize proteins of the endomembrane system as well as proteins secreted from the cell)
  • 20. Vocabulary • Signal peptide – targets the protein to the ER (see figure 17.21) • Signal-recognition particle (SRP) – a protein- RNA complex that recognizes a signal peptide as it emerges from the ribosome.
  • 21. tRNA YOUTUBE IT!!!! • http://www.youtube.com/watch?v=gE46bMA0 Z14 • http://www.youtube.com/watch?v=Deie92DylR M