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birgHPC MOSC2011

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birgHPC Creating Instant Computing Clusters for Bioinformatics and Molecular Dynamics Chew Teong Han Bioinformatics Research Group Faculty of Biosciences & Bioengineering Universiti Teknologi Malaysia
bi rg Team
Introduction
Beowulf circa 1996 NASA/CESDIS US History
PS3s circa 2007 NCSU US
Tienhe-1A circa 2010 NSC China
Motivations
Daytime ~Full load Night time/ Holidays ~Idle
Solution + { something } = - - -
bi rg HPC +
Features ,[object Object]
Use netboot image to boot compute nodes
Auto config of SSH, firewall, IP, apache, home directory detection, slots detection, …
Include parallel-enabled compilers, libraries
Include parallel-ready bioinformatics suite: Gromacs, NAMD, mpiBLAST & ClustalW-MPI
Ganglia cluster monitoring
Include job script
 
 
 
 
 
 
 

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birgHPC MOSC2011