Talk at Virginia Tech, Nov 14, 2008

1. Deepak Singh, Ph.D.

6. Picture via Eole under a CC-BY-NC-SA license

7. ?

8. Via Reavel under a CC-BY-NC-ND license

9. biz dev manager

12. resizable compute capacity

13. scalable web sites

14. number crunching

15. but

16. life science industry

17. software

18. informatics

19. scientific programmer

20. product manager

21. strategist

25. opinions

26. lots of opinions

28. career choices

29. software development

30. informatics

31. computing

32. data

33. open data

34. http://mndoci.com

35. http://c2cbio.com or on iTunes

36. http://bioscreencast.com

37. By jasarcadia under a CC-BY-NC-ND license

38. A meme (pronounced /miːm/) consists of any idea or behavior that can pass from one person to another by learning or imitation

40. big data

41. collective intelligence

42. the new science

43. By ~Prescott under a CC-BY-NC license

44. datasets

45. many datasets

46. PFAM GENBANK ENSEMBL PDB Many Others

48. manageable

49. download

54. data management is not data storage

55. smart

57. context

58. Via Nature Reviews Cancer

59. technology

60. technology ? ? ? ?

61. technology technology technology technology

62. Back of the room

63. listening

64. toxicologists

67. experiment design

68. holistic

69. systems biology

70. the s*&t hits the fan

71. Image courtesy Matt Wood

75. genome #1

76. $3 billion

77. 15 years

79. 1000 genomes

80. http://www.1000genomes.org/

81. By bitterlysweet under a CC-BY-NC-ND license

82. 75 TB / week

83. 600 GB – 6 TB / run

84. 200 TB drive

85. schema

86. fit on a wall too big to

87. implications

88. Via Barack Obama under a CC-BY-NC-SA license

90. utilization

91. capacity planning

92. data availability

93. data access

94. collaboration

95. computation

96. typical informatics workflow

102. distribute everything

103. distributed data

104. distributed computing

105. Via bionicteaching under a CC-BY license

106. Via bionicteaching under a CC-BY license

107. services everywhere

108. data services

109. application services

110. api

111. available everywhere

112. available all the time

121. sensors

122. adverse event reporting

123. research streaming

125. computing everywhere

126. Via Laughing Squid under a CC-BY-NC-ND license

129. collective intelligence is a shared or group intelligence that emerges from the collaboration and competition of many individuals.

131. networked future of science

133. protective

134. A biologist would rather share their toothbrush than their (gene) names -- Mike Ashburner (Cambridge)

137. wisdom

138. look elsewhere

139. Wherever you work most of the smart people are somewhere else -- Bill Joy

140. TIMTOWDI

141. data

142. data finds the data Source: Jeff Jonas

143. data finds the data, then people find people Source: Jon Udell

144. important

145. world wide web

146. giant global graph

148. search

149. traverse link graph

150. people

152. present

153. future

154. data in context

155. linked data

156. the artist formerly known as

157. the semantic web

159. entity extraction

161. follow the graph

162. let the data find the data

163. and then

164. people will find the people

165. information overload

167. filter failure

168. human trust networks

169. many ways

170. scientific social networks

172. why?

173. put people first

175. communities around data

176. http://ecolicommunity.org

177. http://ebird.org/content/ebird/

178. micro-communities

182. little segue

183. “ Bursty Work”

184. loosely distributed collaborations

185. computational problems

189. back on track

190. I define Web 2.0 as the design of systems that harness network effects to get better the more people use them, or more colloquially, as “ harnessing collective intelligence .” This includes explicit network-enabled collaboration, to be sure, but it should encompass every way that people connected to a network create synergistic effects -- Tim O’Reilly

191. web as platform

192. data driven platform

193. people driven platform

197. bayesian filter

198. find relevant information

199. huge amounts of data

200. architect for innovation

201. google visualization api

202. structured data

203. multiple sources

204. connected to the web

205. platform

206. create

207. share

208. re-use

209. visualizations

210. create

211. share

212. re-use

213. create

214. share

215. re-use

218. mashups

221. collect

222. analyze

223. remix

224. repurpose

225. only way

226. open data

227. obey web standards

228. xml

229. json

230. rdf

231. all this stuff

232. new models

233. research

234. collaboration

235. business

236. exciting times

237. Via The Opportunity Agenda under a CC-BY-NC-SA license

238. the door is open

239. take the step

240. Acknowledgements Matt Wood Carole Goble Larry Lessig The Biogang