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NANOBIOSENSORS
biosensors on the nano-scale size
BIOSENSORS
• A device incorporating a biological sensing
  element either intimately connected to or
  integrated within a transducer.
• Recognition based on affinity between
  complementary structures like:
     enzyme-substrate, antibody-antigen , receptor-
      hormone complex.
• Selectivity and specificity depend on
  biological recognition systems connected to
  a suitable transducer.
Biosensor Development
• 1916 First report on the immobilization of proteins: adsorption of
  invertase on activated charcoal.
• 1956 Invention of the first oxygen electrode [Leland Clark]
• 1962 First description of a biosensor: an amperometric enzyme electrode
  for glucose. [Leland Clark, New York Academy of Sciences Symposium]
• 1969 First potentiometric biosensor: urease immobilized on an ammonia
  electrode to detect urea. [Guilbault and Montalvo]
• 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET).
• 1972/5 First commercial biosensor: Yellow Springs Instruments glucose
  biosensor.
• 1976 First bedside artificial pancreas [Clemens et al.]
• 1980 First fiber optic pH sensor for in vivo blood gases.
• 1982 First fiber optic-based biosensor for glucose
• 1983 First surface plasmon resonance (SPR) immunosensor.
• 1987 Launch of the blood glucose biosensor[ MediSense]
Theory
Biosensors

                 Bio-receptor   Transducer
          Molecular                     Optical
DNA                                               Bio-luminescence
Protein                                           Photoluminescence
Glucose                                 Electrical

Etc…..                                            Electronic
          Cell                                    Electrochemical
          Bio-mimetic                   Mechanical
                                                  Resonance
                                                  Bending
Bio-receptor/ analyte complexes

• Antibody/antigen interactions,
• Nucleic acid interactions
• Enzymatic interactions
• Cellular interactions
• Interactions using bio-mimetic materials
(e.g. synthetic bio-receptors).
Signal transduction methods

1. Optical measurements - luminescence,
   absorption, surface plasmon resonance
2. Electrochemical - potentiometric,
   amperometric, etc.
3. Electrical – transistors, nano-wires, conductive
   gels etc.
4. Mass-sensitive measurements- surface
   acoustic wave, microcantilever, microbalance,
   etc.).
Electrical sensing
  Nano-bio interfacing  how to translate the
  biological information onto electrical signal ?
• Electrochemical
   – Redox reactions
• Electrical
   – FET
   (Nano wires; Conducting Electro-active Polymers)
Electrical sensors
FET based methods – FET – Field Effect Transistors
     ISFET – Ion Sensitive FET
     CHEMFET – Chemically Sensitive FET
     SAM-FET – Self Assembly Monolayer Based FET




                               K                  Corrente elettrica
Nanowires Biosensors
             Field Effect
        Nanobiosensors (FET)



• Functionalize the nano-wires
• Binding to bio-molecules will affect the nano-wires conductivity.
Nanowire Field Effect Nanobiosensors (FET)

                    Sensing Element
   Semiconductor channel                            (nanowire) of the
   transistor.

• The semiconductor channel is fabricated using nanomaterials such
  carbon nanotubes, metal oxide nanowires or Si nanowires.
• Very high surface to volume radio and very large portion of the atoms are
  located on the surface. Extremely sensitive to environment
NANOWIRE
NANOTUBE
NW grow across gap between electrodes
Growing NW connect to the second electrode
Form trench in Si and   NW grows        NW connects to opposite
Deposit catalyst        perpendicular   sidewall
Schematic shows two
nanowire devices, 1 and 2,
where the nanowires are
modified with different
antibody receptors.
Specific binding of a single
virus to the receptors on
nanowire 2 produces a
conductance change
(Right) characteristic of the
surface charge of the virus
only in nanowire 2. When
the virus unbinds from the
surface the conductance
returns to the baseline
value.
Other optical methods
• Surface Plasmon Resonance (SPR)
Surface Plasmon Resonance (SPR)
Mechanical sensing

Cantilever-based sensing
Bio-molecule sensing

                        Detection of biomolecules by
                        simple mechanical transduction:
    target molecule
                        - cantilever surface is covered
    receptor molecule     by receptor layer
    gold                  (functionalization)
    SiNx cantilever
                        - biomolecular interaction
                          between receptor and
                          target molecules
                          (molecular recognition)
    target binding
    deflection d        - interaction between adsorbed
                          molecules induces surface stress
                          change
                             bending of cantilever
resonance frequency mass-sensitive detector
                                                                             A

       1       k
f1
      2       m eff                                            f1

                                                                                      f1   f
                                                                             A

        1             k                                         m
f2
       2      m eff        m                                   f2

                                                                                 f2        f
     A mass sensitive resonator transforms an additional mass loading
     into a resonance frequency shift   mass sensor


       B. Kim et al, Institut für Angewandte Physik - Universität Tübingen
Magnetic sensing
• magnetic fields to sense magnetic nano-
  particles that have been attached to biological
  molecules.
Stabilization of Magnetic Particles with various Streptavidin Conc.


  Ligand-functionalized                                                       Magnetic nano -
                                                                              particle
                                                                               Analyte




                                                                        10 min reaction

     None           1 ng/ml         100 ng/ml        100 g/ml
                                                                          Cleaning


                                                                         5 min deposition




Anti-analyte Antibody                                                  T. Osaka, 2006
Magnetic sensing


                                            Sensing plate
Magnetic head


                                               Activated pixel



                                                Idle pixel



                    Magnetic field sensor
                                            Magnetic sensing
Magnetic-optic sensing


                      Polarization   Sensing plate
             Optics
                      Detector
Light
source                                  Activated pixel



                                         Idle pixel
         Polarizer
Applications of Nanobiosensors
Biological Applications
• DNA Sensors; Genetic monitoring, disease
• Immunosensors; HIV, Hepatitis,other viral diseas, drug testing,
   environmental monitoring…
• Cell-based Sensors; functional sensors, drug testing…
• Point-of-care sensors; blood, urine, electrolytes, gases, steroids,
   drugs, hormones, proteins, other…
• Bacteria Sensors; (E-coli, streptococcus, other): food industry,
   medicine, environmental, other.
• Enzyme sensors; diabetics, drug testing, other.
Environmental Applications
• Detection of environmental pollution and toxicity
• Agricultural monitoring
• Ground water screening
• Ocean monitoring
Optical detection of analyte binding
Fluorescence sensors
• Biological materials – using photo-biochemical
  reaction –
   – Photo induced luminescence – photoluminescence –
     example: Green Fluorescent Proteins (GFP)
   – Chemically induced florescence – Bioluminescence -
     Example: Lux
• Physical effects – Luminescence from nano-
  structured materials
   – Semiconductor nano-particles,

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7 nanosensors

  • 2. BIOSENSORS • A device incorporating a biological sensing element either intimately connected to or integrated within a transducer. • Recognition based on affinity between complementary structures like: enzyme-substrate, antibody-antigen , receptor- hormone complex. • Selectivity and specificity depend on biological recognition systems connected to a suitable transducer.
  • 3.
  • 4.
  • 5.
  • 6. Biosensor Development • 1916 First report on the immobilization of proteins: adsorption of invertase on activated charcoal. • 1956 Invention of the first oxygen electrode [Leland Clark] • 1962 First description of a biosensor: an amperometric enzyme electrode for glucose. [Leland Clark, New York Academy of Sciences Symposium] • 1969 First potentiometric biosensor: urease immobilized on an ammonia electrode to detect urea. [Guilbault and Montalvo] • 1970 Invention of the Ion-Selective Field-Effect Transistor (ISFET). • 1972/5 First commercial biosensor: Yellow Springs Instruments glucose biosensor. • 1976 First bedside artificial pancreas [Clemens et al.] • 1980 First fiber optic pH sensor for in vivo blood gases. • 1982 First fiber optic-based biosensor for glucose • 1983 First surface plasmon resonance (SPR) immunosensor. • 1987 Launch of the blood glucose biosensor[ MediSense]
  • 8. Biosensors Bio-receptor Transducer Molecular Optical DNA Bio-luminescence Protein Photoluminescence Glucose Electrical Etc….. Electronic Cell Electrochemical Bio-mimetic Mechanical Resonance Bending
  • 9. Bio-receptor/ analyte complexes • Antibody/antigen interactions, • Nucleic acid interactions • Enzymatic interactions • Cellular interactions • Interactions using bio-mimetic materials (e.g. synthetic bio-receptors).
  • 10. Signal transduction methods 1. Optical measurements - luminescence, absorption, surface plasmon resonance 2. Electrochemical - potentiometric, amperometric, etc. 3. Electrical – transistors, nano-wires, conductive gels etc. 4. Mass-sensitive measurements- surface acoustic wave, microcantilever, microbalance, etc.).
  • 11. Electrical sensing Nano-bio interfacing  how to translate the biological information onto electrical signal ? • Electrochemical – Redox reactions • Electrical – FET (Nano wires; Conducting Electro-active Polymers)
  • 12. Electrical sensors FET based methods – FET – Field Effect Transistors  ISFET – Ion Sensitive FET  CHEMFET – Chemically Sensitive FET  SAM-FET – Self Assembly Monolayer Based FET K Corrente elettrica
  • 13. Nanowires Biosensors Field Effect Nanobiosensors (FET) • Functionalize the nano-wires • Binding to bio-molecules will affect the nano-wires conductivity.
  • 14. Nanowire Field Effect Nanobiosensors (FET) Sensing Element Semiconductor channel (nanowire) of the transistor. • The semiconductor channel is fabricated using nanomaterials such carbon nanotubes, metal oxide nanowires or Si nanowires. • Very high surface to volume radio and very large portion of the atoms are located on the surface. Extremely sensitive to environment
  • 17.
  • 18.
  • 19.
  • 20. NW grow across gap between electrodes Growing NW connect to the second electrode
  • 21. Form trench in Si and NW grows NW connects to opposite Deposit catalyst perpendicular sidewall
  • 22.
  • 23.
  • 24. Schematic shows two nanowire devices, 1 and 2, where the nanowires are modified with different antibody receptors. Specific binding of a single virus to the receptors on nanowire 2 produces a conductance change (Right) characteristic of the surface charge of the virus only in nanowire 2. When the virus unbinds from the surface the conductance returns to the baseline value.
  • 25.
  • 26.
  • 27.
  • 28.
  • 29.
  • 30.
  • 31.
  • 32.
  • 33. Other optical methods • Surface Plasmon Resonance (SPR)
  • 36.
  • 37. Bio-molecule sensing Detection of biomolecules by simple mechanical transduction: target molecule - cantilever surface is covered receptor molecule by receptor layer gold (functionalization) SiNx cantilever - biomolecular interaction between receptor and target molecules (molecular recognition) target binding deflection d - interaction between adsorbed molecules induces surface stress change bending of cantilever
  • 38.
  • 39. resonance frequency mass-sensitive detector A 1 k f1 2 m eff f1 f1 f A 1 k m f2 2 m eff m f2 f2 f A mass sensitive resonator transforms an additional mass loading into a resonance frequency shift mass sensor B. Kim et al, Institut für Angewandte Physik - Universität Tübingen
  • 40. Magnetic sensing • magnetic fields to sense magnetic nano- particles that have been attached to biological molecules.
  • 41. Stabilization of Magnetic Particles with various Streptavidin Conc. Ligand-functionalized Magnetic nano - particle Analyte 10 min reaction None 1 ng/ml 100 ng/ml 100 g/ml Cleaning 5 min deposition Anti-analyte Antibody T. Osaka, 2006
  • 42. Magnetic sensing Sensing plate Magnetic head Activated pixel Idle pixel Magnetic field sensor Magnetic sensing
  • 43. Magnetic-optic sensing Polarization Sensing plate Optics Detector Light source Activated pixel Idle pixel Polarizer
  • 44. Applications of Nanobiosensors Biological Applications • DNA Sensors; Genetic monitoring, disease • Immunosensors; HIV, Hepatitis,other viral diseas, drug testing, environmental monitoring… • Cell-based Sensors; functional sensors, drug testing… • Point-of-care sensors; blood, urine, electrolytes, gases, steroids, drugs, hormones, proteins, other… • Bacteria Sensors; (E-coli, streptococcus, other): food industry, medicine, environmental, other. • Enzyme sensors; diabetics, drug testing, other. Environmental Applications • Detection of environmental pollution and toxicity • Agricultural monitoring • Ground water screening • Ocean monitoring
  • 45. Optical detection of analyte binding
  • 46. Fluorescence sensors • Biological materials – using photo-biochemical reaction – – Photo induced luminescence – photoluminescence – example: Green Fluorescent Proteins (GFP) – Chemically induced florescence – Bioluminescence - Example: Lux • Physical effects – Luminescence from nano- structured materials – Semiconductor nano-particles,