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‫بسم اللة الرحمن الرحيم‬


        ‫‪Dr Alamzeb Khan‬‬   ‫1‬
2
Physiology

   Science that describes how organisms FUNCTION
    and survive in continually changing environments
     




                       Dr Alamzeb Khan            3
CELL:
DEFINITION:

   Cell is the structure and
   functional unit of all
   life….
   Living components is
   called protoplasm
         Discovery:
   For the first time by
   Robert Hook
   Robert Brown
   discovered the nucleus
   in plant cell
   T.Schwan discovered
   animal cell for the first
   time
Cells as the Living Units of the Body
CELLULAR LEVEL - cells are the basic structural and
functional units of the human body & there are many different
types of cells (e.g., muscle, nerve, blood, and so on)




                         Dr Alamzeb Khan                 5
Basic Characteristics
   In all cells, oxygen reacts with carbohydrate, fat,
    and protein to release the energy required for
    cell function.
   General chemical mechanisms for changing
    nutrients into energy are basically the same in all
    cells
   All cells deliver end products of their chemical
    reactions into the surrounding fluids.
   Almost all cells have the ability to reproduce
    their own kind
                        Dr Alamzeb Khan                   6
   TISSUE LEVEL - a tissue is a group of cells
    that perform a specific function .The basic types
    of tissues in the human body include epithelial,
    muscle, nervous, and connective tissues




                       Dr Alamzeb Khan              7
   ORGAN LEVEL - an organ consists of 2 or
    more tissues that perform a particular function
    (e.g., heart, liver, stomach, and so on)
   SYSTEM LEVEL - an association of organs
    that have a common function; the major systems
    in the human body include digestive, nervous,
    endocrine, circulatory, respiratory, urinary, and
    reproductive.

                       Dr Alamzeb Khan              8
   There are two types of cells that
    make up all living things on
    earth:
    prokaryotic
   Eukaryotic.
    Prokaryotic cells, like bacteria,
    have no 'nucleus', while
    eukaryotic cells, like those of the
    human body, do.
   Human cell is enclosed by a cell,
    or plasma, membrane. Enclosed
    by that membrane is the
    cytoplasm (with associated
    organelles) plus a nucleus.

                                    Dr Alamzeb Khan   9
   Two major parts of the cell              Organization of the
    are the nucleus and the                        Cell
    cytoplasm
    The nucleus is separated
    from the cytoplasm by a
    nuclear membrane, and the
    cytoplasm is separated from
    the surrounding fluids by a
    cell membrane, also called the
    plasma membrane
   The different substances
    that make up the cell are
    collectively called protoplasm.
   Protoplasm is composed
    mainly of five basic
    substances: water,
    electrolytes, proteins, lipids,
    and carbohydrates.           Dr Alamzeb Khan                   10
Cell, or Plasma, membrane - encloses every human cell
       Structure - 2 primary building blocks include protein (about
        60% of the membrane) and lipid, or fat (about 40% of the
        membrane). The primary lipid is called phospholipid, and
        molecules of phospholipid form a 'phospholipid bilayer' (two
        layers of phospholipid molecules). This bilayer forms
        because the two 'ends' of phospholipid molecules have very
        different characteristics: one end is polar (or hydrophilic) and
        one (the hydrocarbon tails below) is non-polar (or
        hydrophobic):




                               Dr Alamzeb Khan                         11
   The lipid layer in the
    middle of the membrane
    is impermeable to the
    usual water-soluble
    substances, such as ions,
    glucose , and urea
   fat-soluble substances,
    such as oxygen, carbon
    dioxide, and alcohol, can
    penetrate this portion of
    the membrane with ease.

                          Dr Alamzeb Khan   12
   Cholesterol molecules
    are dissolved in the             The cholesterol
    bilayer of the
    membrane.
   determine the degree
    of permeability (or
    impermeability) of the
    bilayer to water-
    soluble constituents.
    Cholesterol controls
    much of the fluidity
    of the membrane as
                             Dr Alamzeb Khan           13
Cell Membrane Proteins.
   Proteins are globular masses
    floating in the lipid bilayer.
    most of which are glycoproteins.
   Two types of proteins occur:
    integral proteins that protrude
    all the way through the
    membrane,
   peripheral proteins that are
    attached only to one surface
    of the membrane and do not
    penetrate all the way through.




                               Dr Alamzeb Khan   14
Membrane Carbohydrates
   Membrane carbohydrates
    occur in combination with
    proteins or lipids in the
    form of glycoproteins or
    glycolipids.
   most of the integral proteins
    are glycoproteins, and about
    one tenth of the membrane
    lipid molecules are
    glycolipids.
   The "glyco" portions of
    these molecules almost
    invariably protrude to the
    outside of the cell.
                              Dr Alamzeb Khan   15
    Many other
    carbohydrate
    compounds, called
    proteoglycans-which are
    mainly carbohydrate
    substances bound to
    small protein cores-are
    loosely attached to the
    outer surface of the cell
    as well. Thus, the entire
    outside surface of the cell
    often has a loose
    carbohydrate coat called
    the glycocalyx.
                           Dr Alamzeb Khan   16
Functions of membrane include:

   supporting and retaining the cytoplasm
   being a selective barrier
       The cell is separated from its environment and needs to get
        nutrients in and waste products out.
       Some molecules can cross the membrane without assistance,
        most cannot.
       Water, non-polar molecules and some small polar molecules
        can cross.
       Non-polar molecules penetrate by actually dissolving into the
        lipid bilayer.
       Most polar compounds such as amino acids, organic acids
        and inorganic salts are not allowed entry, but instead must be
        specifically transported across the membrane by proteins.
                               Dr Alamzeb Khan                       17
   Many of the proteins in
    the membrane function                   Transport
    to help carry out
    selective transport.
    These proteins typically
    span the whole
    membrane, making
    contact with the outside
    environment and the
    cytoplasm. They often
    require the expenditure
    of energy to help
    compounds move across
    the membrane
                          Dr Alamzeb Khan               18
Cytoplasm and organelles
   Cytoplasm consists of a
    gelatinous solution and
    contains
    microtubules (which serve as
    a cell's cytoskeleton)
   organelles (literally 'little
    organs')
   Without one of the
    organelles, the mitochondria,
    more than 95 per cent of the
    cell's energy release from
    nutrients would cease
    immediately.
                               Dr Alamzeb Khan   19
Organelles
 Dispersed in the cytoplasm are five
  especially important organelles:
 the endoplasmic reticulum,

 the Golgi apparatus,

 mitochondria, lysosomes, and

 peroxisomes.

                 Dr Alamzeb Khan        20
Endoplasmic Reticulum
 a network of
  tubular and flat
  vesicular structures
  in the cytoplasm;
 The tubules and
  vesicles
  interconnect with
  one another.

                    Dr Alamzeb Khan   21
   The space inside the
    tubules and vesicles is
    filled with endoplasmic
    matrix, a watery
    medium that is different
    from the fluid in the
    cytosol outside the
    endoplasmic reticulum.
    Electron micrographs
    show that the space
    inside the endoplasmic
    reticulum is connected
    with the space between
    the two membrane
    surfaces of the nuclear
    membrane.
                         Dr Alamzeb Khan   22
   Substances formed in some parts of the cell
    enter the space of the endoplasmic reticulum
    and are then conducted to other parts of the cell.
    Also, the vast surface area of this reticulum and
    the multiple enzyme systems attached to its
    membranes provide machinery for a major share
    of the metabolic functions of the cell.



                       Dr Alamzeb Khan              23
Ribosomes and the Granular Endoplasmic Reticulum.
   Attached to the outer
    surfaces of many parts of
    the endoplasmic reticulum
    are large numbers of
    minute granular particles
    called ribosomes.
    Where these are present,
    the reticulum is called the
    granular endoplasmic reticulum.
    The ribosomes are
    composed of a mixture of
    RNA and proteins, and
    they function to synthesize
    new protein molecules inAlamzeb Khan
                                Dr            24
Agranular Endoplasmic Reticulum.
   Part of the endoplasmic
    reticulum has no attached
    ribosomes. This part is called
    the agranular, or smooth,
    endoplasmic reticulum.
   The agranular reticulum
    functions for the synthesis of
    lipid substances and for other
    processes of the cells
    promoted by intrareticular
    enzymes.



                              Dr Alamzeb Khan   25
   The Golgi apparatusis
    closely related to the        Golgi Apparatus
    endoplasmic reticulum. It
    has membranes similar
    to those of the agranular
    endoplasmic reticulum. It
    usually is composed of
    four or more stacked
    layers of thin, flat,
    enclosed vesicles lying
    near one side of the
    nucleus. This apparatus
    is prominent in secretory
    cells, where it is located
    on the side of the cell
    from which the secretory
    substances are extruded.Alamzeb Khan
                             Dr                     26
   small "transport vesicles"
    (also called endoplasmic
    reticulum vesicles, or ER
    vesicles) continually pinch off
    from the endoplasmic
    reticulum and shortly
    thereafter fuse with the
    Golgi apparatus.
   In this way, substances
    entrapped in the ER vesicles
    are transported from the
    endoplasmic reticulum to
    the Golgi apparatus.
   The transported substances
    are then processed in the
    Golgi apparatus to form
    lysosomes,
                               Dr Alamzeb Khan   27
Lysosome
   Lysosomes, are vesicular
    organelles that form by
                                                      s
    breaking off from the Golgi
    apparatus and then dispersing
    throughout the cytoplasm.
   The lysosomes provide an
    intracellular digestive system that
    allows the cell to digest (1)
    damaged cellular structures, (2)
    food particles that have been
    ingested by the cell, and (3)
    unwanted matter such as
    bacteria.
                                Dr Alamzeb Khan          28
Peroxisomes Peroxisomes
   Peroxisomes Peroxisomes are similar physically
    to lysosomes, but they are different in two
    important ways.
    First, they are formed by self-replication
   Second, they contain oxidases rather than
    hydrolases. capable of combining oxygen with
    hydrogen ions to form hydrogen peroxide
    (H2O2). a highly oxidizing substance


                       Dr Alamzeb Khan               29
Secretory Vesicles
   Almost all such secretory substances are formed by the
    endoplasmic reticulum-Golgi apparatus system and are
    then released from the Golgi apparatus into the
    cytoplasm in the form of storage vesicles called secretory
    vesicles or secretory granules. these vesicles store protein
    proenzymes




                            Dr Alamzeb Khan                    30
Mitochondria
   The mitochondria, are called
    the "powerhouses" of the
    cell. Without them, cells
    would be unable to extract
    enough energy from the
    nutrients, and essentially all
    cellular functions would
    cease.
   Mitochondria are present in
    all areas of each cell's
    cytoplasm, but the total
    number per cell varies from
    less than a hundred up to
    several thousand

                               Dr Alamzeb Khan   31
The basic structure of the mitochondrion
   composed mainly of two lipid bilayer-protein
    membranes: an outer membrane and an inner
    membrane.
   Many infoldings of the inner membrane form
    shelves onto which oxidative enzymes are
    attached.
   In addition, the inner cavity of the
    mitochondrion is filled with a matrix that
    contains large quantities of dissolved enzymes
    that are necessary for extracting energy from
    nutrients.
   These enzymes operate in association with the
    oxidative enzymes on the shelves to cause
    oxidation of the nutrients, thereby forming
    carbon dioxide and water and at the same time
    releasing energy.
    The liberated energy is used to synthesize a
    "high-energy" substance called adenosine
    triphosphate (ATP). ATP is then transported out
    of the mitochondrion, and it diffuses
    throughout the cell to release its own energy
    wherever it is needed for performing cellular
    functions
                                      Dr Alamzeb Khan                            32
Filament and Tubular Structures of the Cell

   The fibrillar proteins of the cell are usually organized into filaments or
    tubules. These originate as precursor protein molecules synthesized by
    ribosomes in the cytoplasm. The precursor molecules then polymerize to
    form filaments. As an example, large numbers of actin filaments frequently
    occur in the outer zone of the cytoplasm, called the ectoplasm, to form an
    elastic support for the cell membrane.




                                   Dr Alamzeb Khan                               33
Nucleus



   The nucleus is the
    control center of the cell.
    contains large quantities
    of DNA,



                            Dr Alamzeb Khan   34
Nuclear Membrane
   The nuclear membrane, also
    called the nuclear envelope, is
    actually two separate bilayer
    membranes, one inside the
    other. The outer membrane
    is continuous with the
    endoplasmic reticulum of the
    cell cytoplasm, and the space
    between the two nuclear
    membranes is also
    continuous with the space
    inside the endoplasmic
    reticulum



                               Dr Alamzeb Khan   35
The nuclear membrane is penetrated by
                 several thousand nuclear pores. Large
                 complexes of protein molecules are
                 attached at the edges of the pores so
                 that the central area of each pore is
                 only about 9 nanometers in
                 diameter. Even this size is large
                 enough to allow molecules up to
                 44,000 molecular weight to pass
                 through with reasonable ease.




Dr Alamzeb Khan                                   36
 Nucleoli
 The nuclei of most cells contain one or
 more highly staining structures called
 nucleoli. The nucleolus, it is simply an
 accumulation of large amounts of
 RNA and proteins of the types found
 in ribosomes.



                 Dr Alamzeb Khan            37
Dr Alamzeb Khan   38
Dr Alamzeb Khan   39
Extracellular Fluid-The "Internal
             Environment"
   About 60 per cent of the adult human body is fluid,
    mainly a water solution of ions and other substances.
   Most of this fluid is inside the cells and is called
    intracellular fluid.
   One third is in the spaces outside the cells and is called
    extracellular fluid.
   All cells live in essentially the same environment-the
    extracellular fluid. For this reason, the extracellular fluid
    is also called the internal environment of the body, or the
    milieu intérieur,


                            Dr Alamzeb Khan                    40
Differences Between Extracellular and Intracellular Fluids.




                         Dr Alamzeb Khan                 41
Homeostasis
   Maintenance of nearly constant conditions in the internal
    environment
   lungs provide oxygen to the extracellular fluid to
    replenish the oxygen used by the cells,
   kidneys maintain constant ion concentrations,
   Gastrointestinal system provides nutrients.



                          Dr Alamzeb Khan                   42
Physical Structure of the Cell
   Cell contains highly organized physical
    structures, called intracellular organelles.
    Without one of the organelles, the mitochondria,
    more than 95 per cent of the cell's energy release
    from nutrients would cease immediately.




                        Dr Alamzeb Khan              43
Dr Alamzeb Khan   44
Membranous Structures of the Cell
   Most organelles of the cell
    are covered by membranes
    composed primarily of lipids
    and proteins. These
    membranes include the cell
    membrane, nuclear membrane,
    membrane of the endoplasmic
    reticulum, and membranes of the
    mitochondria, lysosomes, and
    Golgi apparatus.




                                Dr Alamzeb Khan   45
Cell Membrane
   The cell membrane (also called the plasma
    membrane), which envelops the cell, is a thin,
    pliable, elastic structure only 7.5 to 10
    nanometers thick. It is composed almost entirely
    of proteins and lipids. The approximate
    composition is proteins, 55 per cent;
    phospholipids, 25 per cent; cholesterol, 13 per
    cent; other lipids, 4 per cent; and carbohydrates,
    3 per cent.
                        Dr Alamzeb Khan              46
   Its basic structure is a lipid bilayer,
    which is a thin, double-layered
    film of lipids-each layer only one                   Lipid
    molecule thick-that is continuous
    over the entire cell surface.
    Interspersed in this lipid film are
    large globular protein molecules.
   The basic lipid bilayer is
    composed of phospholipid
    molecules. One end of each
    phospholipid molecule is soluble
    in water; that is, it is hydrophilic.
    The other end is soluble only in
    fats; that is, it is hydrophobic. The
    phosphate end of the
    phospholipid is hydrophilic, and
    the fatty acid portion is
    hydrophobic.


                                       Dr Alamzeb Khan           47
   Because the hydrophobic
    portions of the phospholipid
    molecules are repelled by water
    but are mutually attracted to one
    another, they have a natural
    tendency to attach to one
    another in the middle of the
    membrane,
   The hydrophilic phosphate
    portions then constitute the two
    surfaces of the complete cell
    membrane, in contact with
    intracellular water on the inside of
    the membrane and extracellular
    water on the outside surface

                                    Dr Alamzeb Khan   48
   The lipid layer in the middle
    of the membrane is
    impermeable to the usual
    water-soluble substances,
    such as ions, glucose , and
    urea
   fat-soluble substances, such
    as oxygen, carbon dioxide,
    and alcohol, can penetrate
    this portion of the membrane
    with ease.


                             Dr Alamzeb Khan   49
The cholesterol
   cholesterol molecules are
    dissolved in the bilayer of the
    membrane.
   determine the degree of
    permeability (or
    impermeability) of the bilayer
    to water-soluble constituents.
    Cholesterol controls much of
    the fluidity of the membrane
    as well.



                                      Dr Alamzeb Khan   50
   Many of the integral proteins provide structural
    channels (or pores) through which water molecules
    and water-soluble substances, especially ions,
    can diffuse between the extracellular and
    intracellular fluids. These protein channels also
    have selective properties that allow preferential
    diffusion of some substances over others.



                       Dr Alamzeb Khan              51
   Other integral proteins act as carrier proteins for
    transporting substances that otherwise could not
    penetrate the lipid bilayer. Sometimes these even
    transport substances in the direction opposite to
    their natural direction of diffusion, which is
    called "active transport." Still others act as
    enzymes.




                        Dr Alamzeb Khan               52
   Integral membrane proteins
    serve as receptors for water-
    soluble chemicals, such as
    peptide hormones, that do
    not easily penetrate the cell
    membrane.




                              Dr Alamzeb Khan   53
Membrane Carbohydrates
   Membrane carbohydrates occur in
    combination with proteins or lipids in
    the form of glycoproteins or glycolipids.
   most of the integral proteins are
    glycoproteins, and about one tenth of
    the membrane lipid molecules are
    glycolipids.
   The "glyco" portions of these molecules
    almost invariably protrude to the
    outside of the cell. Many other
    carbohydrate compounds, called
    proteoglycans-which are mainly
    carbohydrate substances bound to small
    protein cores-are loosely attached to the
    outer surface of the cell as well. Thus,
    the entire outside surface of the cell
    often has a loose carbohydrate coat
    called the glycocalyx.


                                        Dr Alamzeb Khan   54
   The carbohydrate moieties attached to the outer surface of the
    cell have several important functions: (1) Many of them have a
    negative electrical charge, which gives most cells an overall
    negative surface charge that repels other negative objects. (2) The
    glycocalyx of some cells attaches to the glycocalyx of other cells,
    thus attaching cells to one another. (3) Many of the
    carbohydrates act as receptor substances for binding hormones, such
    as insulin; when bound, this combination activates attached
    internal proteins that, in turn, activate a cascade of intracellular
    enzymes. (4) Some carbohydrate moieties enter into immune
    reactions



                               Dr Alamzeb Khan                        55
Cytoplasm and Its Organelles
   The cytoplasm is filled with
    both minute and large
    dispersed particles and
    organelles.
   The clear fluid portion of the
    cytoplasm in which the
    particles are dispersed is
    called cytosol; this contains
    mainly dissolved proteins,
    electrolytes, and glucose .




                              Dr Alamzeb Khan   56
Dr Alamzeb Khan   57
Endoplasmic Reticulum
   a network of tubular and flat
    vesicular structures in the
    cytoplasm;
   The tubules and vesicles
    interconnect with one
    another.
   their walls are constructed of
    lipid bilayer membranes that
    contain large amounts of
    proteins, similar to the cell
    membrane.



                               Dr Alamzeb Khan   58
   The space inside the tubules
    and vesicles is filled with
    endoplasmic matrix, a watery
    medium that is different
    from the fluid in the cytosol
    outside the endoplasmic
    reticulum. Electron
    micrographs show that the
    space inside the endoplasmic
    reticulum is connected with
    the space between the two
    membrane surfaces of the
    nuclear membrane.



                              Dr Alamzeb Khan   59
   Substances formed in some parts of the cell
    enter the space of the endoplasmic reticulum
    and are then conducted to other parts of the cell.
    Also, the vast surface area of this reticulum and
    the multiple enzyme systems attached to its
    membranes provide machinery for a major share
    of the metabolic functions of the cell.



                       Dr Alamzeb Khan              60
Ribosomes and the Granular
              Endoplasmic Reticulum.
   Attached to the outer surfaces of
    many parts of the endoplasmic
    reticulum are large numbers of
    minute granular particles called
    ribosomes.
    Where these are present, the
    reticulum is called the granular
    endoplasmic reticulum. The ribosomes
    are composed of a mixture of
    RNA and proteins, and they
    function to synthesize new protein
    molecules in the cell




                                    Dr Alamzeb Khan   61
Agranular Endoplasmic Reticulum.
   Part of the endoplasmic
    reticulum has no attached
    ribosomes. This part is called
    the agranular, or smooth,
    endoplasmic reticulum.
   The agranular reticulum
    functions for the synthesis of
    lipid substances and for other
    processes of the cells
    promoted by intrareticular
    enzymes.



                              Dr Alamzeb Khan   62
Golgi Apparatus
   The Golgi apparatusis closely
    related to the endoplasmic
    reticulum. It has membranes
    similar to those of the agranular
    endoplasmic reticulum. It usually is
    composed of four or more stacked
    layers of thin, flat, enclosed vesicles
    lying near one side of the nucleus.
    This apparatus is prominent in
    secretory cells, where it is located
    on the side of the cell from which
    the secretory substances are
    extruded.




                                      Dr Alamzeb Khan   63
   small "transport vesicles" (also
    called endoplasmic reticulum
    vesicles, or ER vesicles) continually
    pinch off from the endoplasmic
    reticulum and shortly thereafter
    fuse with the Golgi apparatus. In
    this way, substances entrapped in
    the ER vesicles are transported
    from the endoplasmic reticulum to
    the Golgi apparatus. The
    transported substances are then
    processed in the Golgi apparatus to
    form lysosomes, secretory vesicles,
    and other cytoplasmic components




                                    Dr Alamzeb Khan   64
   Lysosomes, are vesicular organelles that form by
    breaking off from the Golgi apparatus and then
    dispersing throughout the cytoplasm.                     Lysosome
   The lysosomes provide an intracellular digestive
    system that allows the cell to digest (1) damaged
    cellular structures, (2) food particles that have
                                                                 s
    been ingested by the cell, and (3) unwanted
    matter such as bacteria. The lysosome is quite
    different in different types of cells, but it is
    usually 250 to 750 nanometers in diameter. It is
    surrounded by a typical lipid bilayer membrane
    and is filled with large numbers of small granules
    5 to 8 nanometers in diameter, which are protein
    aggregates of as many as 40 different hydrolase
    (digestive) enzymes. A hydrolytic enzyme is capable
    of splitting an organic compound into two or
    more parts by combining hydrogen from a water
    molecule with one part of the compound and
    combining the hydroxyl portion of the water
    molecule with the other part of the compound.
    For instance, protein is hydrolyzed to form
    amino acids , glycogen is hydrolyzed to form
    glucose , and lipids are hydrolyzed to form fatty
    acids and glycerol.




                                           Dr Alamzeb Khan          65
Peroxisomes Peroxisomes
   Peroxisomes Peroxisomes are similar physically to lysosomes,
    but they are different in two important ways. First, they are
    believed to be formed by self-replication (or perhaps by budding
    off from the smooth endoplasmic reticulum) rather than from
    the Golgi apparatus. Second, they contain oxidases rather than
    hydrolases. Several of the oxidases are capable of combining
    oxygen with hydrogen ions derived from different intracellular
    chemicals to form hydrogen peroxide (H2O2). Hydrogen
    peroxide is a highly oxidizing substance and is used in
    association with catalase, another oxidase enzyme present in large
    quantities in peroxisomes, to oxidize many substances that might
    otherwise be poisonous to the cell. For instance, about half the
    alcohol a person drinks is detoxified by the peroxisomes of the
    liver cells in this manner


                              Dr Alamzeb Khan                       66
Secretory Vesicles
   . Almost all such secretory substances are formed by
    the endoplasmic reticulum-Golgi apparatus system and
    are then released from the Golgi apparatus into the
    cytoplasm in the form of storage vesicles called secretory
    vesicles or secretory granules. these vesicles store protein
    proenzymes




                            Dr Alamzeb Khan                    67
Mitochondria
   The mitochondria, are called
    the "powerhouses" of the
    cell. Without them, cells
    would be unable to extract
    enough energy from the
    nutrients, and essentially all
    cellular functions would
    cease.
   Mitochondria are present in
    all areas of each cell's
    cytoplasm, but the total
    number per cell varies from
    less than a hundred up to
    several thousand

                               Dr Alamzeb Khan   68
The basic structure of the mitochondrion
   composed mainly of two lipid bilayer-protein
    membranes: an outer membrane and an inner
    membrane.
   Many infoldings of the inner membrane form
    shelves onto which oxidative enzymes are
    attached.
   In addition, the inner cavity of the
    mitochondrion is filled with a matrix that
    contains large quantities of dissolved enzymes
    that are necessary for extracting energy from
    nutrients.
   These enzymes operate in association with the
    oxidative enzymes on the shelves to cause
    oxidation of the nutrients, thereby forming
    carbon dioxide and water and at the same time
    releasing energy.
    The liberated energy is used to synthesize a
    "high-energy" substance called adenosine
    triphosphate (ATP). ATP is then transported out
    of the mitochondrion, and it diffuses
    throughout the cell to release its own energy
    wherever it is needed for performing cellular
    functions
                                      Dr Alamzeb Khan                            69
Filament and Tubular Structures of the Cell

   The fibrillar proteins of the cell are usually organized into filaments or
    tubules. These originate as precursor protein molecules synthesized by
    ribosomes in the cytoplasm. The precursor molecules then polymerize to
    form filaments. As an example, large numbers of actin filaments frequently
    occur in the outer zone of the cytoplasm, called the ectoplasm, to form an
    elastic support for the cell membrane.




                                   Dr Alamzeb Khan                               70
Nucleus
   The nucleus is the control center
    of the cell. contains large
    quantities of DNA, which are the
    genes. The genes determine the
    characteristics of the cell's
    proteins, including the structural
    proteins, as well as the
    intracellular enzymes that control
    cytoplasmic and nuclear
    activities.
   The genes also control and
    promote reproduction of the cell
    itself.

                                  Dr Alamzeb Khan             71
Nuclear Membrane
   The nuclear membrane, also
    called the nuclear envelope, is
    actually two separate bilayer
    membranes, one inside the
    other. The outer membrane
    is continuous with the
    endoplasmic reticulum of the
    cell cytoplasm, and the space
    between the two nuclear
    membranes is also
    continuous with the space
    inside the endoplasmic
    reticulum



                               Dr Alamzeb Khan   72
The nuclear membrane is penetrated by
            several thousand nuclear pores. Large
            complexes of protein molecules are
            attached at the edges of the pores so
            that the central area of each pore is
            only about 9 nanometers in
            diameter. Even this size is large
            enough to allow molecules up to
            44,000 molecular weight to pass
            through with reasonable ease.




Dr Alamzeb Khan                                     73
   Nucleoli and Formation of Ribosomes The nuclei of
    most cells contain one or more highly staining
    structures called nucleoli. The nucleolus, unlike most
    other organelles discussed here, does not have a
    limiting membrane. Instead, it is simply an
    accumulation of large amounts of RNA and proteins of
    the types found in ribosomes. The nucleolus becomes
    considerably enlarged when the cell is actively
    synthesizing proteins. Formation of the nucleoli (and of
    the ribosomes in the cytoplasm outside the nucleus)
    begins in the nucleus. First, specific DNA genes in the
    chromosomes cause RNA to be synthesized. Some of
    this is stored in the nucleoli, but most of it is
    transported outward through the nuclear pores into
    cytoplasm. Here, it is used in conjunction with specific
    proteins to assemble "mature" ribosomes that play an
    essential role in forming cytoplasmic proteins
                          Dr Alamzeb Khan                 74
Dr Alamzeb Khan   75

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Cells as the living units of the body

  • 1. ‫بسم اللة الرحمن الرحيم‬ ‫‪Dr Alamzeb Khan‬‬ ‫1‬
  • 2. 2
  • 3. Physiology  Science that describes how organisms FUNCTION and survive in continually changing environments   Dr Alamzeb Khan 3
  • 4. CELL: DEFINITION: Cell is the structure and functional unit of all life…. Living components is called protoplasm Discovery: For the first time by Robert Hook Robert Brown discovered the nucleus in plant cell T.Schwan discovered animal cell for the first time
  • 5. Cells as the Living Units of the Body CELLULAR LEVEL - cells are the basic structural and functional units of the human body & there are many different types of cells (e.g., muscle, nerve, blood, and so on) Dr Alamzeb Khan 5
  • 6. Basic Characteristics  In all cells, oxygen reacts with carbohydrate, fat, and protein to release the energy required for cell function.  General chemical mechanisms for changing nutrients into energy are basically the same in all cells  All cells deliver end products of their chemical reactions into the surrounding fluids.  Almost all cells have the ability to reproduce their own kind Dr Alamzeb Khan 6
  • 7. TISSUE LEVEL - a tissue is a group of cells that perform a specific function .The basic types of tissues in the human body include epithelial, muscle, nervous, and connective tissues Dr Alamzeb Khan 7
  • 8. ORGAN LEVEL - an organ consists of 2 or more tissues that perform a particular function (e.g., heart, liver, stomach, and so on)  SYSTEM LEVEL - an association of organs that have a common function; the major systems in the human body include digestive, nervous, endocrine, circulatory, respiratory, urinary, and reproductive. Dr Alamzeb Khan 8
  • 9. There are two types of cells that make up all living things on earth:  prokaryotic  Eukaryotic.  Prokaryotic cells, like bacteria, have no 'nucleus', while eukaryotic cells, like those of the human body, do.  Human cell is enclosed by a cell, or plasma, membrane. Enclosed by that membrane is the cytoplasm (with associated organelles) plus a nucleus. Dr Alamzeb Khan 9
  • 10. Two major parts of the cell Organization of the are the nucleus and the Cell cytoplasm  The nucleus is separated from the cytoplasm by a nuclear membrane, and the cytoplasm is separated from the surrounding fluids by a cell membrane, also called the plasma membrane  The different substances that make up the cell are collectively called protoplasm.  Protoplasm is composed mainly of five basic substances: water, electrolytes, proteins, lipids, and carbohydrates. Dr Alamzeb Khan 10
  • 11. Cell, or Plasma, membrane - encloses every human cell  Structure - 2 primary building blocks include protein (about 60% of the membrane) and lipid, or fat (about 40% of the membrane). The primary lipid is called phospholipid, and molecules of phospholipid form a 'phospholipid bilayer' (two layers of phospholipid molecules). This bilayer forms because the two 'ends' of phospholipid molecules have very different characteristics: one end is polar (or hydrophilic) and one (the hydrocarbon tails below) is non-polar (or hydrophobic): Dr Alamzeb Khan 11
  • 12. The lipid layer in the middle of the membrane is impermeable to the usual water-soluble substances, such as ions, glucose , and urea  fat-soluble substances, such as oxygen, carbon dioxide, and alcohol, can penetrate this portion of the membrane with ease. Dr Alamzeb Khan 12
  • 13. Cholesterol molecules are dissolved in the The cholesterol bilayer of the membrane.  determine the degree of permeability (or impermeability) of the bilayer to water- soluble constituents. Cholesterol controls much of the fluidity of the membrane as Dr Alamzeb Khan 13
  • 14. Cell Membrane Proteins.  Proteins are globular masses floating in the lipid bilayer. most of which are glycoproteins.  Two types of proteins occur:  integral proteins that protrude all the way through the membrane,  peripheral proteins that are attached only to one surface of the membrane and do not penetrate all the way through. Dr Alamzeb Khan 14
  • 15. Membrane Carbohydrates  Membrane carbohydrates occur in combination with proteins or lipids in the form of glycoproteins or glycolipids.  most of the integral proteins are glycoproteins, and about one tenth of the membrane lipid molecules are glycolipids.  The "glyco" portions of these molecules almost invariably protrude to the outside of the cell. Dr Alamzeb Khan 15
  • 16. Many other carbohydrate compounds, called proteoglycans-which are mainly carbohydrate substances bound to small protein cores-are loosely attached to the outer surface of the cell as well. Thus, the entire outside surface of the cell often has a loose carbohydrate coat called the glycocalyx. Dr Alamzeb Khan 16
  • 17. Functions of membrane include:  supporting and retaining the cytoplasm  being a selective barrier  The cell is separated from its environment and needs to get nutrients in and waste products out.  Some molecules can cross the membrane without assistance, most cannot.  Water, non-polar molecules and some small polar molecules can cross.  Non-polar molecules penetrate by actually dissolving into the lipid bilayer.  Most polar compounds such as amino acids, organic acids and inorganic salts are not allowed entry, but instead must be specifically transported across the membrane by proteins. Dr Alamzeb Khan 17
  • 18. Many of the proteins in the membrane function Transport to help carry out selective transport.  These proteins typically span the whole membrane, making contact with the outside environment and the cytoplasm. They often require the expenditure of energy to help compounds move across the membrane Dr Alamzeb Khan 18
  • 19. Cytoplasm and organelles  Cytoplasm consists of a gelatinous solution and contains  microtubules (which serve as a cell's cytoskeleton)  organelles (literally 'little organs')  Without one of the organelles, the mitochondria, more than 95 per cent of the cell's energy release from nutrients would cease immediately. Dr Alamzeb Khan 19
  • 20. Organelles  Dispersed in the cytoplasm are five especially important organelles:  the endoplasmic reticulum,  the Golgi apparatus,  mitochondria, lysosomes, and  peroxisomes. Dr Alamzeb Khan 20
  • 21. Endoplasmic Reticulum  a network of tubular and flat vesicular structures in the cytoplasm;  The tubules and vesicles interconnect with one another. Dr Alamzeb Khan 21
  • 22. The space inside the tubules and vesicles is filled with endoplasmic matrix, a watery medium that is different from the fluid in the cytosol outside the endoplasmic reticulum. Electron micrographs show that the space inside the endoplasmic reticulum is connected with the space between the two membrane surfaces of the nuclear membrane. Dr Alamzeb Khan 22
  • 23. Substances formed in some parts of the cell enter the space of the endoplasmic reticulum and are then conducted to other parts of the cell. Also, the vast surface area of this reticulum and the multiple enzyme systems attached to its membranes provide machinery for a major share of the metabolic functions of the cell. Dr Alamzeb Khan 23
  • 24. Ribosomes and the Granular Endoplasmic Reticulum.  Attached to the outer surfaces of many parts of the endoplasmic reticulum are large numbers of minute granular particles called ribosomes.  Where these are present, the reticulum is called the granular endoplasmic reticulum. The ribosomes are composed of a mixture of RNA and proteins, and they function to synthesize new protein molecules inAlamzeb Khan Dr 24
  • 25. Agranular Endoplasmic Reticulum.  Part of the endoplasmic reticulum has no attached ribosomes. This part is called the agranular, or smooth, endoplasmic reticulum.  The agranular reticulum functions for the synthesis of lipid substances and for other processes of the cells promoted by intrareticular enzymes. Dr Alamzeb Khan 25
  • 26. The Golgi apparatusis closely related to the Golgi Apparatus endoplasmic reticulum. It has membranes similar to those of the agranular endoplasmic reticulum. It usually is composed of four or more stacked layers of thin, flat, enclosed vesicles lying near one side of the nucleus. This apparatus is prominent in secretory cells, where it is located on the side of the cell from which the secretory substances are extruded.Alamzeb Khan Dr 26
  • 27. small "transport vesicles" (also called endoplasmic reticulum vesicles, or ER vesicles) continually pinch off from the endoplasmic reticulum and shortly thereafter fuse with the Golgi apparatus.  In this way, substances entrapped in the ER vesicles are transported from the endoplasmic reticulum to the Golgi apparatus.  The transported substances are then processed in the Golgi apparatus to form lysosomes, Dr Alamzeb Khan 27
  • 28. Lysosome  Lysosomes, are vesicular organelles that form by s breaking off from the Golgi apparatus and then dispersing throughout the cytoplasm.  The lysosomes provide an intracellular digestive system that allows the cell to digest (1) damaged cellular structures, (2) food particles that have been ingested by the cell, and (3) unwanted matter such as bacteria. Dr Alamzeb Khan 28
  • 29. Peroxisomes Peroxisomes  Peroxisomes Peroxisomes are similar physically to lysosomes, but they are different in two important ways.  First, they are formed by self-replication  Second, they contain oxidases rather than hydrolases. capable of combining oxygen with hydrogen ions to form hydrogen peroxide (H2O2). a highly oxidizing substance Dr Alamzeb Khan 29
  • 30. Secretory Vesicles  Almost all such secretory substances are formed by the endoplasmic reticulum-Golgi apparatus system and are then released from the Golgi apparatus into the cytoplasm in the form of storage vesicles called secretory vesicles or secretory granules. these vesicles store protein proenzymes Dr Alamzeb Khan 30
  • 31. Mitochondria  The mitochondria, are called the "powerhouses" of the cell. Without them, cells would be unable to extract enough energy from the nutrients, and essentially all cellular functions would cease.  Mitochondria are present in all areas of each cell's cytoplasm, but the total number per cell varies from less than a hundred up to several thousand Dr Alamzeb Khan 31
  • 32. The basic structure of the mitochondrion  composed mainly of two lipid bilayer-protein membranes: an outer membrane and an inner membrane.  Many infoldings of the inner membrane form shelves onto which oxidative enzymes are attached.  In addition, the inner cavity of the mitochondrion is filled with a matrix that contains large quantities of dissolved enzymes that are necessary for extracting energy from nutrients.  These enzymes operate in association with the oxidative enzymes on the shelves to cause oxidation of the nutrients, thereby forming carbon dioxide and water and at the same time releasing energy.  The liberated energy is used to synthesize a "high-energy" substance called adenosine triphosphate (ATP). ATP is then transported out of the mitochondrion, and it diffuses throughout the cell to release its own energy wherever it is needed for performing cellular functions Dr Alamzeb Khan 32
  • 33. Filament and Tubular Structures of the Cell  The fibrillar proteins of the cell are usually organized into filaments or tubules. These originate as precursor protein molecules synthesized by ribosomes in the cytoplasm. The precursor molecules then polymerize to form filaments. As an example, large numbers of actin filaments frequently occur in the outer zone of the cytoplasm, called the ectoplasm, to form an elastic support for the cell membrane. Dr Alamzeb Khan 33
  • 34. Nucleus  The nucleus is the control center of the cell. contains large quantities of DNA, Dr Alamzeb Khan 34
  • 35. Nuclear Membrane  The nuclear membrane, also called the nuclear envelope, is actually two separate bilayer membranes, one inside the other. The outer membrane is continuous with the endoplasmic reticulum of the cell cytoplasm, and the space between the two nuclear membranes is also continuous with the space inside the endoplasmic reticulum Dr Alamzeb Khan 35
  • 36. The nuclear membrane is penetrated by several thousand nuclear pores. Large complexes of protein molecules are attached at the edges of the pores so that the central area of each pore is only about 9 nanometers in diameter. Even this size is large enough to allow molecules up to 44,000 molecular weight to pass through with reasonable ease. Dr Alamzeb Khan 36
  • 37.  Nucleoli  The nuclei of most cells contain one or more highly staining structures called nucleoli. The nucleolus, it is simply an accumulation of large amounts of RNA and proteins of the types found in ribosomes. Dr Alamzeb Khan 37
  • 40. Extracellular Fluid-The "Internal Environment"  About 60 per cent of the adult human body is fluid, mainly a water solution of ions and other substances.  Most of this fluid is inside the cells and is called intracellular fluid.  One third is in the spaces outside the cells and is called extracellular fluid.  All cells live in essentially the same environment-the extracellular fluid. For this reason, the extracellular fluid is also called the internal environment of the body, or the milieu intérieur, Dr Alamzeb Khan 40
  • 41. Differences Between Extracellular and Intracellular Fluids. Dr Alamzeb Khan 41
  • 42. Homeostasis  Maintenance of nearly constant conditions in the internal environment  lungs provide oxygen to the extracellular fluid to replenish the oxygen used by the cells,  kidneys maintain constant ion concentrations,  Gastrointestinal system provides nutrients. Dr Alamzeb Khan 42
  • 43. Physical Structure of the Cell  Cell contains highly organized physical structures, called intracellular organelles.  Without one of the organelles, the mitochondria, more than 95 per cent of the cell's energy release from nutrients would cease immediately. Dr Alamzeb Khan 43
  • 45. Membranous Structures of the Cell  Most organelles of the cell are covered by membranes composed primarily of lipids and proteins. These membranes include the cell membrane, nuclear membrane, membrane of the endoplasmic reticulum, and membranes of the mitochondria, lysosomes, and Golgi apparatus. Dr Alamzeb Khan 45
  • 46. Cell Membrane  The cell membrane (also called the plasma membrane), which envelops the cell, is a thin, pliable, elastic structure only 7.5 to 10 nanometers thick. It is composed almost entirely of proteins and lipids. The approximate composition is proteins, 55 per cent; phospholipids, 25 per cent; cholesterol, 13 per cent; other lipids, 4 per cent; and carbohydrates, 3 per cent. Dr Alamzeb Khan 46
  • 47. Its basic structure is a lipid bilayer, which is a thin, double-layered film of lipids-each layer only one Lipid molecule thick-that is continuous over the entire cell surface. Interspersed in this lipid film are large globular protein molecules.  The basic lipid bilayer is composed of phospholipid molecules. One end of each phospholipid molecule is soluble in water; that is, it is hydrophilic. The other end is soluble only in fats; that is, it is hydrophobic. The phosphate end of the phospholipid is hydrophilic, and the fatty acid portion is hydrophobic. Dr Alamzeb Khan 47
  • 48. Because the hydrophobic portions of the phospholipid molecules are repelled by water but are mutually attracted to one another, they have a natural tendency to attach to one another in the middle of the membrane,  The hydrophilic phosphate portions then constitute the two surfaces of the complete cell membrane, in contact with intracellular water on the inside of the membrane and extracellular water on the outside surface Dr Alamzeb Khan 48
  • 49. The lipid layer in the middle of the membrane is impermeable to the usual water-soluble substances, such as ions, glucose , and urea  fat-soluble substances, such as oxygen, carbon dioxide, and alcohol, can penetrate this portion of the membrane with ease. Dr Alamzeb Khan 49
  • 50. The cholesterol  cholesterol molecules are dissolved in the bilayer of the membrane.  determine the degree of permeability (or impermeability) of the bilayer to water-soluble constituents. Cholesterol controls much of the fluidity of the membrane as well. Dr Alamzeb Khan 50
  • 51. Many of the integral proteins provide structural channels (or pores) through which water molecules and water-soluble substances, especially ions, can diffuse between the extracellular and intracellular fluids. These protein channels also have selective properties that allow preferential diffusion of some substances over others. Dr Alamzeb Khan 51
  • 52. Other integral proteins act as carrier proteins for transporting substances that otherwise could not penetrate the lipid bilayer. Sometimes these even transport substances in the direction opposite to their natural direction of diffusion, which is called "active transport." Still others act as enzymes. Dr Alamzeb Khan 52
  • 53. Integral membrane proteins serve as receptors for water- soluble chemicals, such as peptide hormones, that do not easily penetrate the cell membrane. Dr Alamzeb Khan 53
  • 54. Membrane Carbohydrates  Membrane carbohydrates occur in combination with proteins or lipids in the form of glycoproteins or glycolipids.  most of the integral proteins are glycoproteins, and about one tenth of the membrane lipid molecules are glycolipids.  The "glyco" portions of these molecules almost invariably protrude to the outside of the cell. Many other carbohydrate compounds, called proteoglycans-which are mainly carbohydrate substances bound to small protein cores-are loosely attached to the outer surface of the cell as well. Thus, the entire outside surface of the cell often has a loose carbohydrate coat called the glycocalyx. Dr Alamzeb Khan 54
  • 55. The carbohydrate moieties attached to the outer surface of the cell have several important functions: (1) Many of them have a negative electrical charge, which gives most cells an overall negative surface charge that repels other negative objects. (2) The glycocalyx of some cells attaches to the glycocalyx of other cells, thus attaching cells to one another. (3) Many of the carbohydrates act as receptor substances for binding hormones, such as insulin; when bound, this combination activates attached internal proteins that, in turn, activate a cascade of intracellular enzymes. (4) Some carbohydrate moieties enter into immune reactions Dr Alamzeb Khan 55
  • 56. Cytoplasm and Its Organelles  The cytoplasm is filled with both minute and large dispersed particles and organelles.  The clear fluid portion of the cytoplasm in which the particles are dispersed is called cytosol; this contains mainly dissolved proteins, electrolytes, and glucose . Dr Alamzeb Khan 56
  • 58. Endoplasmic Reticulum  a network of tubular and flat vesicular structures in the cytoplasm;  The tubules and vesicles interconnect with one another.  their walls are constructed of lipid bilayer membranes that contain large amounts of proteins, similar to the cell membrane. Dr Alamzeb Khan 58
  • 59. The space inside the tubules and vesicles is filled with endoplasmic matrix, a watery medium that is different from the fluid in the cytosol outside the endoplasmic reticulum. Electron micrographs show that the space inside the endoplasmic reticulum is connected with the space between the two membrane surfaces of the nuclear membrane. Dr Alamzeb Khan 59
  • 60. Substances formed in some parts of the cell enter the space of the endoplasmic reticulum and are then conducted to other parts of the cell. Also, the vast surface area of this reticulum and the multiple enzyme systems attached to its membranes provide machinery for a major share of the metabolic functions of the cell. Dr Alamzeb Khan 60
  • 61. Ribosomes and the Granular Endoplasmic Reticulum.  Attached to the outer surfaces of many parts of the endoplasmic reticulum are large numbers of minute granular particles called ribosomes.  Where these are present, the reticulum is called the granular endoplasmic reticulum. The ribosomes are composed of a mixture of RNA and proteins, and they function to synthesize new protein molecules in the cell Dr Alamzeb Khan 61
  • 62. Agranular Endoplasmic Reticulum.  Part of the endoplasmic reticulum has no attached ribosomes. This part is called the agranular, or smooth, endoplasmic reticulum.  The agranular reticulum functions for the synthesis of lipid substances and for other processes of the cells promoted by intrareticular enzymes. Dr Alamzeb Khan 62
  • 63. Golgi Apparatus  The Golgi apparatusis closely related to the endoplasmic reticulum. It has membranes similar to those of the agranular endoplasmic reticulum. It usually is composed of four or more stacked layers of thin, flat, enclosed vesicles lying near one side of the nucleus. This apparatus is prominent in secretory cells, where it is located on the side of the cell from which the secretory substances are extruded. Dr Alamzeb Khan 63
  • 64. small "transport vesicles" (also called endoplasmic reticulum vesicles, or ER vesicles) continually pinch off from the endoplasmic reticulum and shortly thereafter fuse with the Golgi apparatus. In this way, substances entrapped in the ER vesicles are transported from the endoplasmic reticulum to the Golgi apparatus. The transported substances are then processed in the Golgi apparatus to form lysosomes, secretory vesicles, and other cytoplasmic components Dr Alamzeb Khan 64
  • 65. Lysosomes, are vesicular organelles that form by breaking off from the Golgi apparatus and then dispersing throughout the cytoplasm. Lysosome  The lysosomes provide an intracellular digestive system that allows the cell to digest (1) damaged cellular structures, (2) food particles that have s been ingested by the cell, and (3) unwanted matter such as bacteria. The lysosome is quite different in different types of cells, but it is usually 250 to 750 nanometers in diameter. It is surrounded by a typical lipid bilayer membrane and is filled with large numbers of small granules 5 to 8 nanometers in diameter, which are protein aggregates of as many as 40 different hydrolase (digestive) enzymes. A hydrolytic enzyme is capable of splitting an organic compound into two or more parts by combining hydrogen from a water molecule with one part of the compound and combining the hydroxyl portion of the water molecule with the other part of the compound. For instance, protein is hydrolyzed to form amino acids , glycogen is hydrolyzed to form glucose , and lipids are hydrolyzed to form fatty acids and glycerol. Dr Alamzeb Khan 65
  • 66. Peroxisomes Peroxisomes  Peroxisomes Peroxisomes are similar physically to lysosomes, but they are different in two important ways. First, they are believed to be formed by self-replication (or perhaps by budding off from the smooth endoplasmic reticulum) rather than from the Golgi apparatus. Second, they contain oxidases rather than hydrolases. Several of the oxidases are capable of combining oxygen with hydrogen ions derived from different intracellular chemicals to form hydrogen peroxide (H2O2). Hydrogen peroxide is a highly oxidizing substance and is used in association with catalase, another oxidase enzyme present in large quantities in peroxisomes, to oxidize many substances that might otherwise be poisonous to the cell. For instance, about half the alcohol a person drinks is detoxified by the peroxisomes of the liver cells in this manner Dr Alamzeb Khan 66
  • 67. Secretory Vesicles  . Almost all such secretory substances are formed by the endoplasmic reticulum-Golgi apparatus system and are then released from the Golgi apparatus into the cytoplasm in the form of storage vesicles called secretory vesicles or secretory granules. these vesicles store protein proenzymes Dr Alamzeb Khan 67
  • 68. Mitochondria  The mitochondria, are called the "powerhouses" of the cell. Without them, cells would be unable to extract enough energy from the nutrients, and essentially all cellular functions would cease.  Mitochondria are present in all areas of each cell's cytoplasm, but the total number per cell varies from less than a hundred up to several thousand Dr Alamzeb Khan 68
  • 69. The basic structure of the mitochondrion  composed mainly of two lipid bilayer-protein membranes: an outer membrane and an inner membrane.  Many infoldings of the inner membrane form shelves onto which oxidative enzymes are attached.  In addition, the inner cavity of the mitochondrion is filled with a matrix that contains large quantities of dissolved enzymes that are necessary for extracting energy from nutrients.  These enzymes operate in association with the oxidative enzymes on the shelves to cause oxidation of the nutrients, thereby forming carbon dioxide and water and at the same time releasing energy.  The liberated energy is used to synthesize a "high-energy" substance called adenosine triphosphate (ATP). ATP is then transported out of the mitochondrion, and it diffuses throughout the cell to release its own energy wherever it is needed for performing cellular functions Dr Alamzeb Khan 69
  • 70. Filament and Tubular Structures of the Cell  The fibrillar proteins of the cell are usually organized into filaments or tubules. These originate as precursor protein molecules synthesized by ribosomes in the cytoplasm. The precursor molecules then polymerize to form filaments. As an example, large numbers of actin filaments frequently occur in the outer zone of the cytoplasm, called the ectoplasm, to form an elastic support for the cell membrane. Dr Alamzeb Khan 70
  • 71. Nucleus  The nucleus is the control center of the cell. contains large quantities of DNA, which are the genes. The genes determine the characteristics of the cell's proteins, including the structural proteins, as well as the intracellular enzymes that control cytoplasmic and nuclear activities.  The genes also control and promote reproduction of the cell itself. Dr Alamzeb Khan 71
  • 72. Nuclear Membrane  The nuclear membrane, also called the nuclear envelope, is actually two separate bilayer membranes, one inside the other. The outer membrane is continuous with the endoplasmic reticulum of the cell cytoplasm, and the space between the two nuclear membranes is also continuous with the space inside the endoplasmic reticulum Dr Alamzeb Khan 72
  • 73. The nuclear membrane is penetrated by several thousand nuclear pores. Large complexes of protein molecules are attached at the edges of the pores so that the central area of each pore is only about 9 nanometers in diameter. Even this size is large enough to allow molecules up to 44,000 molecular weight to pass through with reasonable ease. Dr Alamzeb Khan 73
  • 74. Nucleoli and Formation of Ribosomes The nuclei of most cells contain one or more highly staining structures called nucleoli. The nucleolus, unlike most other organelles discussed here, does not have a limiting membrane. Instead, it is simply an accumulation of large amounts of RNA and proteins of the types found in ribosomes. The nucleolus becomes considerably enlarged when the cell is actively synthesizing proteins. Formation of the nucleoli (and of the ribosomes in the cytoplasm outside the nucleus) begins in the nucleus. First, specific DNA genes in the chromosomes cause RNA to be synthesized. Some of this is stored in the nucleoli, but most of it is transported outward through the nuclear pores into cytoplasm. Here, it is used in conjunction with specific proteins to assemble "mature" ribosomes that play an essential role in forming cytoplasmic proteins Dr Alamzeb Khan 74