Chado for evolutionary biology

Chado for evolutionary science Chris Mungall HHMI (until June) National Center for Biomedical Ontologies (after June)

Outline ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Chado: what is it? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Chado key concepts ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Chado modules ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Sequence module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

A biological ontology is: ,[object Object],eye ,[object Object],[object Object],ommatidium sense organ eye disc is_a part_of develops from

cv module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

phylogeny module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

phylogeny module status ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

phenotype module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

key tables ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

PATO: Attributes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

Combining entity terms and PATO terms ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

Extensions to simple EAV? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

OBD and NCBO ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],phenotype phylogeny cv sequence

Summary ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Thanks ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

the feature_relationship table ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

organism module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

phylogeny module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

phylogeny: SQL functions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

phylogeny module ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

phylogeny module: open questions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Linking phylogeny to phenotype ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

phenotype module: status ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Software integration ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Chado for evolutionary biology

Empfohlen

Empfohlen

Weitere ähnliche Inhalte

Was ist angesagt?

Was ist angesagt? (20)

Ähnlich wie Chado for evolutionary biology

Ähnlich wie Chado for evolutionary biology (20)

Mehr von Chris Mungall

Mehr von Chris Mungall (20)

Kürzlich hochgeladen

Kürzlich hochgeladen (20)

Chado for evolutionary biology