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A web client for visualizing protein sequence features Rafael C. Jimenez BOSC 2007 at ISMB 2007 in Vienna, Austria
Outline of this presentation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DAS ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DAS The Distributed Annotation System, 2001 Dowell et al; BMC Bioinformatics. 2001; 2: 7. Published online 2001 October 10. illustration
Dasty2 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Dasty2 Query page Request module Annotation servers  (features.xml) Diplaying page Reference server  (seqeunce.xml) Visualization module
Dasty2 extensions Extensions aim to enrich Dasty2 by: - Visualizing more data types provided by DAS. - Providing extra functionality to domain experts. Extensions: -  Integration server -  Three dimensional protein structure viewer -  Genome viewer - Display multiple aligment results - Visual ontology query tool - Advance search web page
More about DAS and Dasty2 AFP-Biosapiens SIG meeting Dasty2 (posters session) Today, Thursday from 12:00 to 2:00 OntoDas by  Kieran O'Neill  (talk) Tomorrow, Friday from 09:50 to 10:10 DAS by  Andreas Prlic  (talk) Tomorrow, Friday from 16:50 to 17:10  Ontology SIG meeting OntoDas by  Kieran O'Neill  (talk) Tomorrow, Friday from X to Y
Acknowledgments Supervision - Henning Hermjakob , EMBL-EBI, UK   Development - Rafael C. Jimenez , EMBL-EBI, UK NBN central node, South Africa - Antony Quinn , EMBL-EBI, UK Participation and collaboration -  Alberto Labarga , EMBL-EBI, UK -  Andreas Prlic , Wellcome Trust Sanger Institute, UK -  Eugene Kulesha , EMBL-EBI, UK   -  Nisha Vinod , EMBL-EBI, UK -  Philip Jones , EMBL-EBI, UK -  Andreas Kahari , EMBL-EBI, UK -  Alexander Garcia , NBN central node, South Africa -  Kieran O'Neill , NBN central node, South Africa -  Dan Jacobson , NBN central node, South Africa Funding and collaborations Ministerio de Educacion y Ciencia BioSapiens Network of Excellence European Commission (FP6 Programme) Proteomics Services EBI-EMBL National Bioinformatics Network of South Africa
Dasty2 examples ,[object Object],[object Object],[object Object],[object Object],[object Object]

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Dastyt2

  • 1. A web client for visualizing protein sequence features Rafael C. Jimenez BOSC 2007 at ISMB 2007 in Vienna, Austria
  • 2.
  • 3.
  • 4. DAS The Distributed Annotation System, 2001 Dowell et al; BMC Bioinformatics. 2001; 2: 7. Published online 2001 October 10. illustration
  • 5.
  • 6. Dasty2 Query page Request module Annotation servers (features.xml) Diplaying page Reference server (seqeunce.xml) Visualization module
  • 7. Dasty2 extensions Extensions aim to enrich Dasty2 by: - Visualizing more data types provided by DAS. - Providing extra functionality to domain experts. Extensions: - Integration server - Three dimensional protein structure viewer - Genome viewer - Display multiple aligment results - Visual ontology query tool - Advance search web page
  • 8. More about DAS and Dasty2 AFP-Biosapiens SIG meeting Dasty2 (posters session) Today, Thursday from 12:00 to 2:00 OntoDas by Kieran O'Neill (talk) Tomorrow, Friday from 09:50 to 10:10 DAS by Andreas Prlic (talk) Tomorrow, Friday from 16:50 to 17:10 Ontology SIG meeting OntoDas by Kieran O'Neill (talk) Tomorrow, Friday from X to Y
  • 9. Acknowledgments Supervision - Henning Hermjakob , EMBL-EBI, UK Development - Rafael C. Jimenez , EMBL-EBI, UK NBN central node, South Africa - Antony Quinn , EMBL-EBI, UK Participation and collaboration - Alberto Labarga , EMBL-EBI, UK - Andreas Prlic , Wellcome Trust Sanger Institute, UK - Eugene Kulesha , EMBL-EBI, UK - Nisha Vinod , EMBL-EBI, UK - Philip Jones , EMBL-EBI, UK - Andreas Kahari , EMBL-EBI, UK - Alexander Garcia , NBN central node, South Africa - Kieran O'Neill , NBN central node, South Africa - Dan Jacobson , NBN central node, South Africa Funding and collaborations Ministerio de Educacion y Ciencia BioSapiens Network of Excellence European Commission (FP6 Programme) Proteomics Services EBI-EMBL National Bioinformatics Network of South Africa
  • 10.