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BBTV in sub-Saharan Africa
Status and Needs
Lava Kumar & Rachid Hanna


B Mwemenamda   M Soko (Malawi)
F Beed         R Londa (Angola)
J Lorenzen     J Ngeve (Cameroon)
K Fiaboe       MP Mutunda (Angola)
O Opyami       D Kiala (Angola)
P van Asten    RA Naidu (USA)
S Hauser
S Akinbade
TT Oben


                                     www.iita.org
Banana bunchy top virus

•Type species in the genus, Babuvirus (family,
Nanoviridae)
•Transmitted by the banana aphid, Pentalonia
nigronervosa, persistent circulative manner.
•Occurs in Africa, South and Southeast Asia, Australia
and South Pacific
•Virus in Southeast Asia is different from South Asia




                                    Banana aphid
                                    BBTV-South pacific group
                                    BBTV-Asian group



                                                 www.iita.org
•BBTV is amongst the list
 of top 100 of invasive
 species.

 •Difficult to control and
 eradicate.



2010: UN Year of Biodiversity
Scope for exploiting threats to
biodiveristy – eg. BBTV on
plantain diversity


                                  www.iita.org
Banana aphid




                                 Direct damage – reduced plant growth




Vector banana bunchy top virus
(+ other viruses)


                                                             www.iita.org
BBTV - not a new foe in SSA

•Severe BBTV outbreaks in
Malawi, Mozambique and
Zambia.

•What are the causes for the
recent surge of BBTV in SSA?

•Variation in the virus or        Reproduced from “Foure and Manser (1982) Fruits Vol 37, 410.
vector, introduction/evolution
of a more virulent forms?
                                   •BBTV occurrence in Kisangani (DRC) and
                                   Gabon known since mid-1950s.
•Changes in cultural practices
or the environment, including
climate change effect, causing
this spread?


                                                                                             www.iita.org
BBTV in SSA
      Present




     Before 1960s

     Since 1980s

     Since 1990s

     Since 2004

  Present 2009




          www.iita.org
BBTV Survey


                                               •Roving survey in major
                                               and minor banana growing
                                               areas.
                                               •Focus of BBTV and banana
                                               aphids.
                                               •Leaf samples collected
                                               from symptomatic and
                                               asymptomatic plants for
                                               virus analysis.
                                               •Interviews with farmers


•Surveys were also conducted in Nigeria, Benin and Ghana, but There
is no evidence of BBTV in these countries.


                                                                      www.iita.org
BBTV Detection

                     Multiplex PCR with internal control primer



  Internal Control
[BRep-1] (400 bp)



   BBTV specific
       (240 bp)




                                                                  www.iita.org
Number of surveyed sites with BBTV
                                                                                   Sites surveyed           Sites with BBTV
                                                              80
                                                                                                                  68




                                            Number of sites
•Survey conducted                                             70                 62
in 198 sites in 5                                             60
countries.                                                    50
                                                              40                             34        31
                                                              30                                                    27
•BBTV detected in                                                                                 18        20
                                                              20                      10
39.4% sites                                                   10      3 3
surveyed                                                       0
                                                                      Angola     Cameroon    Gabon     DRC       Malawi


                                 Percent samples positive to BBTV
                     50
                           N=7                                           N=295
                     45
 Percent infection




                     40    43%                                           44%
                     35                                       N=224
                     30                                       33%
                                                                                                       •BBTV detected in
                     25                                                                    N=1159      22.7% of the
                     20                                                           N=107     22.7%      samples tested.
                     15                                                            19%
                     10             N=520
                      5
                                     6%
                      0
                          Angola Cameroon Gabon                          DRC      Malawi    Total
                                                                                                                     www.iita.org
•BBTV is widespread in Central and Southern Africa. Widespread occurrence
since 1994

•Severe disease expression in Cavendish, but local varieties, despite
infection can tolerate (suppressed symptoms) the disease.

•Human movement of planting material seems to be the main
reason for widespread distribution.

•Role of aphid transmission is significant in most places.

•Infected plants are the potential sources for new spread.

•Risk of spread is high in the routes of traditional exchange of planting
material.

•Important to protect the source sites.

                                                                      www.iita.org
•Nkumba village
•Symptoms are not apparent, but BBTV positive;
•Original source brought in 1997                 www.iita.org
•Nkunga
•Symptoms are not apparent, BBTV not detected
•No new planting material for over 50 years.    www.iita.org
•Mampakasa (Inside Luki reserve, Boma, DRC)




                                    www.iita.org
www.iita.org
BBTV spread mainly through infected suckers

                                      Banana rich




                              Banana rich

First outbreak
                                                Movement of
                                              planting material




                                            Banana rich



                                                                  www.iita.org
BBTV Geneology in SSA




                        www.iita.org
Geneology of BBTV

              • Coat protein (DNA-S) and replicase (DNA-R) gene
                sequences of 10 BBTV isolates from Cameroon,
                Gabon, DRC, Malawi and Angola determined.

DNA-R(1)       •Pair-wise comparisons of coat protein sequences
 1111 nts
               (nucleotides / amino acids)
  286aa




DNA-S(3)
1075 nts

 175aa
            •Very high sequence similarities 98-100% sequence identity


                                                             www.iita.org
Coat protein-based geneology




                    www.iita.org
Replicase-gene based geneology




                     www.iita.org
•BBTV in SSA aligns with BBTV isolates from South Pacific group.

 •High sequence similarity between the BBTV isolates suggest a common origin.

 •There is no evidence of any unusual features in virus.

•Severe incidence and spread seems to be due to
-Increase in cultivation of most susceptible varieties, such as Cavendish
-Planting of infected suckers
-Aphids vector contributing to the secondary spread.




                                                                            www.iita.org
•Basic knowledge and technologies available to tackle
the problem.

•Tolerant (or less susceptible) varieties available, which
could avert economic losses .

•Awareness creation, training in virus monitoring and
production of clean planting material is necessary.




                                                        www.iita.org
Future Needs




               www.iita.org
BBTV control in SSA

        Curative                              Preventive


1. Reduce sources of inoculum-               Exclusion & Prevention
Eliminate crop refuges                 Control of material movement
                                             Awareness campaigns
                                                  Increased vigilance
2. Reduce spread
                                                Routine surveillance
Vector control
                                                      Field isolations
Physical barriers
Seed testing

3. Reduce impact
Replace infected mats
Cultivate tolerant varieties

4. Avoidance by cultural methods
Field isolation (buffer zone)
Plant spacing
                                                             www.iita.org
BBTV Control in SSA

•Production and distribution of clean planting material is the key

•Protect new planting material from new infection

•Prevent further spread and protect source sites from BBTV infestation


Immediate
•Awareness creation [Share information]
•Strengthen monitoring capacity [Diagnostics]
•Clearly delineate affected areas to contain the spread [intensive surveillance]

Shot to Medium-term
•Promote production and distribution of clean planting material

Medium to long term
•Vector control and genetic enhancement

                                                                            www.iita.org
Thank you




            www.iita.org
R4D issues
Etiology, Epidemiology and vector control
• virus diversity;
• virus-vector interactions, its survival and spread;
• ecology of aphids and means of its involvement in long and short-
  distance spread of virus.
• Develop sensitive diagnostic tools for on-site virus detection.
• Explore biocontrol approaches for virus (biopriming with
  endophytes) and banana aphid (natural enemies and biopriming
  with endophytes))




                                                                    www.iita.org
R4D issues

Genetic enhancement
• Evaluate African Musa germplasm for selection of farmer-preferred
  varieties with partial resistance/tolerance to the virus and/or vector
  to slow the epidemic.
• Explore novel conventional and non-conventional approaches
  against BBTV or banana aphid or both




                                                                    www.iita.org
R4D issues
Extension
• Create awareness about the disease and control options, including
  importance of planting disease-free suckers, among farmers and officials
  associated with agricultural sector in SSA.
• Train farmers in the production of clean planting material (lessons from on-
  going IITA activities).
• Train national partners in virus indexing and producing virus-free planting
  material.
• Pest risk analysis in SSA.
Impact on livelihoods and crop diversity
• Socio-economic studies to determine the implications and feasibility of
  phytosanitary approaches under subsistence farming conditions.




                                                                            www.iita.org

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BBTV in sub-Saharan Africa: Status and Needs

  • 1. BBTV in sub-Saharan Africa Status and Needs Lava Kumar & Rachid Hanna B Mwemenamda M Soko (Malawi) F Beed R Londa (Angola) J Lorenzen J Ngeve (Cameroon) K Fiaboe MP Mutunda (Angola) O Opyami D Kiala (Angola) P van Asten RA Naidu (USA) S Hauser S Akinbade TT Oben www.iita.org
  • 2. Banana bunchy top virus •Type species in the genus, Babuvirus (family, Nanoviridae) •Transmitted by the banana aphid, Pentalonia nigronervosa, persistent circulative manner. •Occurs in Africa, South and Southeast Asia, Australia and South Pacific •Virus in Southeast Asia is different from South Asia Banana aphid BBTV-South pacific group BBTV-Asian group www.iita.org
  • 3. •BBTV is amongst the list of top 100 of invasive species. •Difficult to control and eradicate. 2010: UN Year of Biodiversity Scope for exploiting threats to biodiveristy – eg. BBTV on plantain diversity www.iita.org
  • 4. Banana aphid Direct damage – reduced plant growth Vector banana bunchy top virus (+ other viruses) www.iita.org
  • 5. BBTV - not a new foe in SSA •Severe BBTV outbreaks in Malawi, Mozambique and Zambia. •What are the causes for the recent surge of BBTV in SSA? •Variation in the virus or Reproduced from “Foure and Manser (1982) Fruits Vol 37, 410. vector, introduction/evolution of a more virulent forms? •BBTV occurrence in Kisangani (DRC) and Gabon known since mid-1950s. •Changes in cultural practices or the environment, including climate change effect, causing this spread? www.iita.org
  • 6. BBTV in SSA Present Before 1960s Since 1980s Since 1990s Since 2004 Present 2009 www.iita.org
  • 7. BBTV Survey •Roving survey in major and minor banana growing areas. •Focus of BBTV and banana aphids. •Leaf samples collected from symptomatic and asymptomatic plants for virus analysis. •Interviews with farmers •Surveys were also conducted in Nigeria, Benin and Ghana, but There is no evidence of BBTV in these countries. www.iita.org
  • 8. BBTV Detection Multiplex PCR with internal control primer Internal Control [BRep-1] (400 bp) BBTV specific (240 bp) www.iita.org
  • 9. Number of surveyed sites with BBTV Sites surveyed Sites with BBTV 80 68 Number of sites •Survey conducted 70 62 in 198 sites in 5 60 countries. 50 40 34 31 30 27 •BBTV detected in 18 20 20 10 39.4% sites 10 3 3 surveyed 0 Angola Cameroon Gabon DRC Malawi Percent samples positive to BBTV 50 N=7 N=295 45 Percent infection 40 43% 44% 35 N=224 30 33% •BBTV detected in 25 N=1159 22.7% of the 20 N=107 22.7% samples tested. 15 19% 10 N=520 5 6% 0 Angola Cameroon Gabon DRC Malawi Total www.iita.org
  • 10. •BBTV is widespread in Central and Southern Africa. Widespread occurrence since 1994 •Severe disease expression in Cavendish, but local varieties, despite infection can tolerate (suppressed symptoms) the disease. •Human movement of planting material seems to be the main reason for widespread distribution. •Role of aphid transmission is significant in most places. •Infected plants are the potential sources for new spread. •Risk of spread is high in the routes of traditional exchange of planting material. •Important to protect the source sites. www.iita.org
  • 11. •Nkumba village •Symptoms are not apparent, but BBTV positive; •Original source brought in 1997 www.iita.org
  • 12. •Nkunga •Symptoms are not apparent, BBTV not detected •No new planting material for over 50 years. www.iita.org
  • 13. •Mampakasa (Inside Luki reserve, Boma, DRC) www.iita.org
  • 15. BBTV spread mainly through infected suckers Banana rich Banana rich First outbreak Movement of planting material Banana rich www.iita.org
  • 16. BBTV Geneology in SSA www.iita.org
  • 17. Geneology of BBTV • Coat protein (DNA-S) and replicase (DNA-R) gene sequences of 10 BBTV isolates from Cameroon, Gabon, DRC, Malawi and Angola determined. DNA-R(1) •Pair-wise comparisons of coat protein sequences 1111 nts (nucleotides / amino acids) 286aa DNA-S(3) 1075 nts 175aa •Very high sequence similarities 98-100% sequence identity www.iita.org
  • 20. •BBTV in SSA aligns with BBTV isolates from South Pacific group. •High sequence similarity between the BBTV isolates suggest a common origin. •There is no evidence of any unusual features in virus. •Severe incidence and spread seems to be due to -Increase in cultivation of most susceptible varieties, such as Cavendish -Planting of infected suckers -Aphids vector contributing to the secondary spread. www.iita.org
  • 21. •Basic knowledge and technologies available to tackle the problem. •Tolerant (or less susceptible) varieties available, which could avert economic losses . •Awareness creation, training in virus monitoring and production of clean planting material is necessary. www.iita.org
  • 22. Future Needs www.iita.org
  • 23. BBTV control in SSA Curative Preventive 1. Reduce sources of inoculum- Exclusion & Prevention Eliminate crop refuges Control of material movement Awareness campaigns Increased vigilance 2. Reduce spread Routine surveillance Vector control Field isolations Physical barriers Seed testing 3. Reduce impact Replace infected mats Cultivate tolerant varieties 4. Avoidance by cultural methods Field isolation (buffer zone) Plant spacing www.iita.org
  • 24. BBTV Control in SSA •Production and distribution of clean planting material is the key •Protect new planting material from new infection •Prevent further spread and protect source sites from BBTV infestation Immediate •Awareness creation [Share information] •Strengthen monitoring capacity [Diagnostics] •Clearly delineate affected areas to contain the spread [intensive surveillance] Shot to Medium-term •Promote production and distribution of clean planting material Medium to long term •Vector control and genetic enhancement www.iita.org
  • 25. Thank you www.iita.org
  • 26. R4D issues Etiology, Epidemiology and vector control • virus diversity; • virus-vector interactions, its survival and spread; • ecology of aphids and means of its involvement in long and short- distance spread of virus. • Develop sensitive diagnostic tools for on-site virus detection. • Explore biocontrol approaches for virus (biopriming with endophytes) and banana aphid (natural enemies and biopriming with endophytes)) www.iita.org
  • 27. R4D issues Genetic enhancement • Evaluate African Musa germplasm for selection of farmer-preferred varieties with partial resistance/tolerance to the virus and/or vector to slow the epidemic. • Explore novel conventional and non-conventional approaches against BBTV or banana aphid or both www.iita.org
  • 28. R4D issues Extension • Create awareness about the disease and control options, including importance of planting disease-free suckers, among farmers and officials associated with agricultural sector in SSA. • Train farmers in the production of clean planting material (lessons from on- going IITA activities). • Train national partners in virus indexing and producing virus-free planting material. • Pest risk analysis in SSA. Impact on livelihoods and crop diversity • Socio-economic studies to determine the implications and feasibility of phytosanitary approaches under subsistence farming conditions. www.iita.org