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Textual and non-textual objects:
Seamless access for scientists

Uwe Rosemann

ICIC 2013
Vienna
German National Library of Science and Technology (TIB)
• Specialized Library for Architecture, Chemistry, Computer Science,
Mathematics, Physics, Engineering Technology
• Financed by Federal Government and all Federal States
• Member of the Leibniz Association

• Global supplier for scientific and technical
information

2
Global Network

TechLib

3
Customers

Germany

Europe

10%

71%

USA

14%

World

5%
4
Main Services
• Provision of scientific content
• full texts, document delivery, interlibrary loan
• Scientific retrieval
• portal GetInfo
• Long-term preservation
• DOI-Service for research data
• Research and development

5
Changes in the scientific process

Jim Gray, eScience Group, Microsoft Research

6
A gap
• A widening gap in the scientific record between published
research in a text document and the data that underlies it
• As a result, datasets are
• difficult to discover
• difficult to access
• Scientific information gets lost

7
Requirements - Politics
Knowledge is power.
Europe must manage the digital assets its researchers generate.

8
„Riding the wave“ – How Europe can gain access
from the rising tide of scientific data
Final report of the High Level Expert Group on Scientific Data.

9
Strategy – Move beyond text

Scientific Films
3D Objects
Software

Simulation

Research Data

Text

10
Move beyond text – Consequences for TIB
• Research communities produce many types of scientific and technical
information
• Each has its own unique characteristics and life cycle
• Must become capable of accepting and managing new media formats

11
Competence Center for Non-textual Materials I
• Develop a clear strategy for the use and integration of non-textual
materials at the TIB
• Systematically collect non-textual materials from research and teaching
• Define, integrate and establish technical infrastructure

• Define and establish workflows for indexing, cataloguing, digital
preservation, DOI names, licencing

12
Competence Center for Non-textual Materials II
• Develop innovative media-specific portals enabled by e.g. an automated
video analysis with scene, speech, text and image recognition
• Linking non-textual materials to other research information such as full
texts and research data via the specialist portal GetInfo
• Engage in communities, provide support and advice to media providers
 TIB will establish its own research capacity

13
How have we been preparing ?
• Infrastructure for research data
• Visual search tools for AV-media

• 3D-Objects
• chemOCR

14
Collaboration – Research Data
• In 2005, the TIB became a non-commercial DOI registration agency
for research data
• In 2010, the TIB became co-founder of the international DataCite
consortium to establish easier access to scientific research data on the
Internet

Mission
• Citability of research data
• High visibility of the data
• Easy re-use and verification of the data sets
• Increasing quality of published papers

15
DataCite Members

16
Example: EHEC virus

17
Example: EHEC virus

18
DOI Services
• Contracts with 60 data centres
•
•
•
•

Research Institutes
Universities
Libraries
Publisher

• 776.454 DOI registrations
• 22.533 up to September 2013

19
Research data – Further developments
• KomFor
• Centre of Expertise for Research Data from the „Earth and
Environment“ project
• RADAR
• RADAR - Research Data Repositorium

• Visual Analysis
• VisInfo Methods

20
Numerical data
Zeit [h]
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24

T [°C]
12
13
12
12
13
35
17
11
10
12
13
13
12
12
12
11
11
10
10
11
11
10
12
12

21
Visual access to research data

22
How have we been preparing ?
• Infrastructure for research data

• Visual search tools for AV-media
• 3D-Objects
• chemOCR

23
TIB‘s portal for audiovisual media
Project
Aim
Time
Partner

Development of a portal for audiovisual media
Improve access to AV-Media
July 2011 – December 2013
Hasso-Plattner Institut for Softwaresystemtechnology GmbH

24
TIB‘s portal for audiovisual media
How do I find what I‘m looking for in videos?

Today: Manual annotation of the whole video

Metadata
• Titel
• Author
• Description
• Publisher
• Publication year
• Rightsholder
• …..

25
TIB‘s portal for audiovisual media
Future: Manual Annotation plus content-based information

1. Speech

Leibniz University Hannover

source: Scorupka, Sascha, Experiment der Woche, 2011

2. Visual features
e.g. Indoor, Experiment, Technology
3. Textual information
4. Structural Information
Scenes, Shots, Segments

26
TIB‘s portal for audiovisual media
Media analysis process

Upload

27
TIB‘s portal for audiovisual media
Scene recognition

Hard cut

Automatic cut detection
→ luminance / contrast
→ colour distribution / colour
histogramm
→ edges
28
Kopf, S. Computergestützte Inhaltsanalyse von digitalen Videoarchiven, Mannheim. 2006
TIB‘s portal for audiovisual media
Automatic speech recognition

this work is copy right ed nine teen thirty six

Quality of results is dependent upon
• quality of the speaker
• dialects
• background noises
• voice overlaps
29
Harald Sack, Hasso-Plattner-Institute for IT-Systems Engineering
TIB‘s portal for audiovisual media
Intelligent Character Recognition
Intelligent Character Recognition
(ICR)
• Character/Logo Detection
• Character Filtering
• Character Recognition

30
TIB‘s portal for audiovisual media
Automated analysis: Image recognition

Method of analysis
Image recognition
Interview, experiment,
animation, lecture
Extracted data is
converted into text

31
TIB‘s portal for audiovisual media
Keyframes

Annotation

Machine learning
using visual features

Visual Concepts
Graphical : Animation
Graphical : Drawing
Graphical : Diagram
Real : Outdoor
Real : Indoor
Real : Lecture /
Conference
Real : Interview
Real : Buildings
...

32
TIB‘s portal for audiovisual media

33
How have we been preparing?
• Infrastructure for research data
• Visual search tools for AV-media

• 3D Objects
• chemOCR

34
3D Objects – an excursion to Architecture

35 35
Visual search tools

visual search

content based
indexing

36
Content based indexing
segmentation with
form-primitives

extraction of
room connectivity
graphs

37
Visual search

attributed graph

3D sketch

result
visualization

38
Further developments

39
How have we been preparing ?
• Infrastructure for research data

• Visual search tools for AV-media
• 3D Objects
• chemOCR

40
Information retrieval in Chemistry
Search for chemical structures – how?
Chemists are used to drawing

?

41
Textual and non-textual chemical information
Table with reaction
scheme
Chemical Names

Linked entities
from the table

2a-i: Derivates from
the reaction

Chemical
structure

Reaction scheme

42
Non-textual data processing – chemOCR

image data

CLiDE

chemical structure data

chemOCR

43
Information retrieval in chemistry
Text AND formulas

44
Further subjects
• Open Science Lab
• Ontology

45
Conclusion
Dissemination of scientific and technical information has been a
foundational mission.
The methods have completely changed, but the mission
remains the same.

46
Conclusion

Ultimate Goal:

Interlinking and Search Across All
Types of Digital Assets.

47
GetInfo – Portal for Science and Technology
• 58 m metadata in internal index

• 390 m metadata in external sources
• 900.000 pdf fulltexts
• Data, AV-Media, 3D Objects

48
Development of media-specific portals

BEREITSTELLU
NG

Portal for audiovisual Media

Probado 3D
49
Questions?

50

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ICIC 2013 Conference Proceedings Uwe Rosemann TIB

  • 1. Textual and non-textual objects: Seamless access for scientists Uwe Rosemann ICIC 2013 Vienna
  • 2. German National Library of Science and Technology (TIB) • Specialized Library for Architecture, Chemistry, Computer Science, Mathematics, Physics, Engineering Technology • Financed by Federal Government and all Federal States • Member of the Leibniz Association • Global supplier for scientific and technical information 2
  • 5. Main Services • Provision of scientific content • full texts, document delivery, interlibrary loan • Scientific retrieval • portal GetInfo • Long-term preservation • DOI-Service for research data • Research and development 5
  • 6. Changes in the scientific process Jim Gray, eScience Group, Microsoft Research 6
  • 7. A gap • A widening gap in the scientific record between published research in a text document and the data that underlies it • As a result, datasets are • difficult to discover • difficult to access • Scientific information gets lost 7
  • 8. Requirements - Politics Knowledge is power. Europe must manage the digital assets its researchers generate. 8
  • 9. „Riding the wave“ – How Europe can gain access from the rising tide of scientific data Final report of the High Level Expert Group on Scientific Data. 9
  • 10. Strategy – Move beyond text Scientific Films 3D Objects Software Simulation Research Data Text 10
  • 11. Move beyond text – Consequences for TIB • Research communities produce many types of scientific and technical information • Each has its own unique characteristics and life cycle • Must become capable of accepting and managing new media formats 11
  • 12. Competence Center for Non-textual Materials I • Develop a clear strategy for the use and integration of non-textual materials at the TIB • Systematically collect non-textual materials from research and teaching • Define, integrate and establish technical infrastructure • Define and establish workflows for indexing, cataloguing, digital preservation, DOI names, licencing 12
  • 13. Competence Center for Non-textual Materials II • Develop innovative media-specific portals enabled by e.g. an automated video analysis with scene, speech, text and image recognition • Linking non-textual materials to other research information such as full texts and research data via the specialist portal GetInfo • Engage in communities, provide support and advice to media providers  TIB will establish its own research capacity 13
  • 14. How have we been preparing ? • Infrastructure for research data • Visual search tools for AV-media • 3D-Objects • chemOCR 14
  • 15. Collaboration – Research Data • In 2005, the TIB became a non-commercial DOI registration agency for research data • In 2010, the TIB became co-founder of the international DataCite consortium to establish easier access to scientific research data on the Internet Mission • Citability of research data • High visibility of the data • Easy re-use and verification of the data sets • Increasing quality of published papers 15
  • 19. DOI Services • Contracts with 60 data centres • • • • Research Institutes Universities Libraries Publisher • 776.454 DOI registrations • 22.533 up to September 2013 19
  • 20. Research data – Further developments • KomFor • Centre of Expertise for Research Data from the „Earth and Environment“ project • RADAR • RADAR - Research Data Repositorium • Visual Analysis • VisInfo Methods 20
  • 21. Numerical data Zeit [h] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 T [°C] 12 13 12 12 13 35 17 11 10 12 13 13 12 12 12 11 11 10 10 11 11 10 12 12 21
  • 22. Visual access to research data 22
  • 23. How have we been preparing ? • Infrastructure for research data • Visual search tools for AV-media • 3D-Objects • chemOCR 23
  • 24. TIB‘s portal for audiovisual media Project Aim Time Partner Development of a portal for audiovisual media Improve access to AV-Media July 2011 – December 2013 Hasso-Plattner Institut for Softwaresystemtechnology GmbH 24
  • 25. TIB‘s portal for audiovisual media How do I find what I‘m looking for in videos? Today: Manual annotation of the whole video Metadata • Titel • Author • Description • Publisher • Publication year • Rightsholder • ….. 25
  • 26. TIB‘s portal for audiovisual media Future: Manual Annotation plus content-based information 1. Speech Leibniz University Hannover source: Scorupka, Sascha, Experiment der Woche, 2011 2. Visual features e.g. Indoor, Experiment, Technology 3. Textual information 4. Structural Information Scenes, Shots, Segments 26
  • 27. TIB‘s portal for audiovisual media Media analysis process Upload 27
  • 28. TIB‘s portal for audiovisual media Scene recognition Hard cut Automatic cut detection → luminance / contrast → colour distribution / colour histogramm → edges 28 Kopf, S. Computergestützte Inhaltsanalyse von digitalen Videoarchiven, Mannheim. 2006
  • 29. TIB‘s portal for audiovisual media Automatic speech recognition this work is copy right ed nine teen thirty six Quality of results is dependent upon • quality of the speaker • dialects • background noises • voice overlaps 29 Harald Sack, Hasso-Plattner-Institute for IT-Systems Engineering
  • 30. TIB‘s portal for audiovisual media Intelligent Character Recognition Intelligent Character Recognition (ICR) • Character/Logo Detection • Character Filtering • Character Recognition 30
  • 31. TIB‘s portal for audiovisual media Automated analysis: Image recognition Method of analysis Image recognition Interview, experiment, animation, lecture Extracted data is converted into text 31
  • 32. TIB‘s portal for audiovisual media Keyframes Annotation Machine learning using visual features Visual Concepts Graphical : Animation Graphical : Drawing Graphical : Diagram Real : Outdoor Real : Indoor Real : Lecture / Conference Real : Interview Real : Buildings ... 32
  • 33. TIB‘s portal for audiovisual media 33
  • 34. How have we been preparing? • Infrastructure for research data • Visual search tools for AV-media • 3D Objects • chemOCR 34
  • 35. 3D Objects – an excursion to Architecture 35 35
  • 36. Visual search tools visual search content based indexing 36
  • 37. Content based indexing segmentation with form-primitives extraction of room connectivity graphs 37
  • 38. Visual search attributed graph 3D sketch result visualization 38
  • 40. How have we been preparing ? • Infrastructure for research data • Visual search tools for AV-media • 3D Objects • chemOCR 40
  • 41. Information retrieval in Chemistry Search for chemical structures – how? Chemists are used to drawing ? 41
  • 42. Textual and non-textual chemical information Table with reaction scheme Chemical Names Linked entities from the table 2a-i: Derivates from the reaction Chemical structure Reaction scheme 42
  • 43. Non-textual data processing – chemOCR image data CLiDE chemical structure data chemOCR 43
  • 44. Information retrieval in chemistry Text AND formulas 44
  • 45. Further subjects • Open Science Lab • Ontology 45
  • 46. Conclusion Dissemination of scientific and technical information has been a foundational mission. The methods have completely changed, but the mission remains the same. 46
  • 47. Conclusion Ultimate Goal: Interlinking and Search Across All Types of Digital Assets. 47
  • 48. GetInfo – Portal for Science and Technology • 58 m metadata in internal index • 390 m metadata in external sources • 900.000 pdf fulltexts • Data, AV-Media, 3D Objects 48
  • 49. Development of media-specific portals BEREITSTELLU NG Portal for audiovisual Media Probado 3D 49