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Jeffrey Heer @jeffrey_heer
Univ. of Washington + Trifacta
Visualization for
DISCOVERY
Effectiveness of
Penicillin,
Neomycin &
Streptomycin vs.
Bacteria Species
Visualization for Discovery
Visualization for Discovery
Which antibiotic should one use?
Show data variation,
not design variation.
- Edward Tufte
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Wainer & Lysen
Am. Sci. 2009
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Wainer & Lysen
Am. Sci. 2009
What does antibiotic
response reveal about the
biology of bacteria?
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Wainer & Lysen
Am. Sci. 2009
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Wainer & Lysen
Am. Sci. 2009
?
?
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Wainer & Lysen
Am. Sci. 2009
Not a
streptococcus!
Actually a
streptococcus!
How might our tools
spur new questions and
prompt skepticism?
Visualization for Discovery
Visualization for Discovery
0 10 20 30 40
Neomycin
0
200
400
600
800
Penicillin
0.001 0.01 0.1 1 10 100
Log10(Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(Penicillin)
0.0010.010.1110100
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin)
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin)
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Aerobacter
Brucella
Bacillus
Diplococcus
Escherichia
Klebsiella
Mycobacterium
Proteus
Pseudomonas
Salmonella
Staphylococcus
Streptococcus
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
Aerobacter aerogenes
Brucella abortus
Bacillus anthracis
Diplococcus pneumoniae
Escherichia coli
Klebsiella pneumoniae
Mycobacterium tuberculosis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella typhosa
Salmonella schottmuelleri
Staphylococcus albus
Staphylococcus aureus
Streptococcus fecalis
Streptococcus hemolyticus
Streptococcus viridans
0.0010.010.11101001,000
Log10(1 / Neomycin)
0.001
0.01
0.1
1
10
100
1,000
Log10(1/Penicillin) Genus
Streptococcus
Staphylococcus
Salmonella
Other
A Combinatorial Design Space
1. Variable Selection
A Combinatorial Design Space
1. Variable Selection
2. Data Transformation
A Combinatorial Design Space
1. Variable Selection
2. Data Transformation
3. Visual Encoding Design
A Combinatorial Design Space
1. Variable Selection
2. Data Transformation
3. Visual Encoding Design
—> Thousands of possible charts!
A Combinatorial Design Space
How might we augment
manual chart construction
with interactive browsing of
recommended visualizations?
Visualization for Discovery
ggplot(diamonds, aes(x=price, fill=cut))
+ geom_bar(position="dodge")
Visualization for Discovery
1. Trifacta Visual Profiler
2. Data Voyager (UW + Tableau)
1. Trifacta Visual Profiler
2. Data Voyager (UW + Tableau)
Trifacta Visual Profiler
OverviewOverview
Trifacta Visual Profiler
DetailsDetails
Trifacta Visual Profiler
Trifacta Visual Profiler
Trifacta Visual Profiler
Trifacta Visual Profiler
Trifacta Visual Profiler
Trifacta Visual Profiler
Trifacta Visual Profiler
1. Trifacta Visual Profiler
2. Data Voyager (UW + Tableau)
Visualization for Discovery
User
Voyager 

Visualization Browser
User


Data Set
Voyager 

Visualization Browser
Compass
Recommendation Engine
Data Schema
& Statistics 

User
Voyager 

Visualization Browser
Compass
Recommendation Engine
Data Schema
& Statistics 

User
1. Select data variables
2. Apply transformations
3. Pick visual encodings
Voyager 

Visualization Browser
Compass
Recommendation Engine
Data Schema
& Statistics 

User
Constrain & rank choices
by data type, statistics &
perceptual principles.
Voyager 

Visualization Browser
Data Schema
& Statistics 

Ranked and Clustered
Vega-lite Specifications
User
Compass
Recommendation Engine
Voyager 

Visualization Browser
Compass
Recommendation Engine
Vega-lite
Compiler
Vega-lite
Specifications
Ranked and Clustered
Vega-lite Specifications
User
Data Schema
& Statistics 

Voyager 

Visualization Browser
Compass
Recommendation Engine
Vega
Renderer
Vega-lite
Compiler
Vega-lite
Specifications
Vega

Specifications
Ranked and Clustered
Vega-lite Specifications
User
Data Schema
& Statistics 

Voyager 

Visualization Browser
Compass
Recommendation Engine
Vega
Renderer
Interactive
Visualizations
Vega-lite
Specifications
Vega

Specifications
Ranked and Clustered
Vega-lite Specifications
User
Data Schema
& Statistics 

Vega-lite
Compiler
Voyager 

Visualization Browser
Interactive
Visualizations
Compass
Recommendation Engine
Vega
Renderer
Interactive
Visualizations
Vega-lite
Specifications
Vega

Specifications
Ranked and Clustered
Vega-lite Specifications
User
Data Schema
& Statistics 

Vega-lite
Compiler
Voyager 

Visualization Browser
Interactive
Visualizations
User 

Selection
Compass
Recommendation Engine
Vega
Renderer
Interactive
Visualizations
Vega-lite
Specifications
Vega

Specifications
User Selection,
Data Schema
& Statistics 

Ranked and Clustered
Vega-lite Specifications
User
Vega-lite
Compiler
Voyager 

Visualization Browser
Interactive
Visualizations
User 

Selection
Compass
Recommendation Engine
Vega
Renderer
Interactive
Visualizations
Vega-lite
Specifications
Vega

Specifications
User Selection,
Data Schema
& Statistics 

Ranked and Clustered
Vega-lite Specifications
User
Improves data coverage!
+3x variable sets shown
+1.5x more interacted with
Vega-lite
Compiler
Refining visualization recommendation
What to optimize? How to evaluate?
Scaling interactive visualizations
Large D harder than large N…
Help avoid statistical pitfalls
Recognize mix effects, convey uncertainty
Ongoing Challenges
How might our tools
spur new questions and
prompt skepticism?
Visualization for Discovery
vega.github.io
Jeffrey Heer @jeffrey_heer
Univ. of Washington + Trifacta
Visualization for
DISCOVERY

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Visualization for Discovery