Surya Saha
29 SlideShares 25 Followers 20 Folgens
Personal Information
Unternehmen/Arbeitsplatz
Ithaca, New York Area United States
Beruf
Senior Bioinformatics Analyst (DevOps)
Branche
Medical / Health Care / Pharmaceuticals
Info
Working with a cross-matrixed team of molecular and computational biologists on a variety of vector biology, genome assembly, annotation, proteomics, metagenomics, microbiome and transcriptomics projects. Specialties: Computer Science skills: System administration, Virtualization, Machine learning, Artificial Intelligence, Association rule mining, Open source tools, Object oriented programming, Graph theory, Cloud computing and Cluster computing. Biological domains: Comparative Genomics, RNAseq, Microbiome, Proteomics, Metagenomics, Annotation, Repeat/Transposon discovery and characterization, Assembly, PCR, SSR analysis. Languages and tools: Linux, Perl (BioPerl, DBIx::Class, Moose),...
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sequencing citrus database citrusgreening pacbio genomics rnaseq assembly bioinformatics genome illumina insect disease hlb annotation plant bionano quality control psyllid transcriptome pathway pathways fastq nanopore ngs arthropod isoseq genes proteins scaffolding 10x vector web tomato tutorial command-line interface solgenomics genotyping sanger biology metagenomics pipeline docker agriculture science open source open data visual expression webinar metabolites biocyc canu dovetail big data nexgen linux pag2015 cassava gbs technology error ngs bioinformatics citrusgreening microbiome genom microbiome endosymbionts workflow its tools 16s
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Präsentationen

(29)
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Tools for Metagenomics with 16S/ITS and Whole Genome Shotgun Sequences

Vor 10 Jahren • 35449 Aufrufe

Endosymbiont hunting in the metagenome of Asian citrus psyllid (Diaphorina citri)

Vor 10 Jahren • 1312 Aufrufe

Mining Eukaryotic Meta-Genomes for Endosymbionts using Next-Generation Sequencing

Vor 10 Jahren • 1081 Aufrufe

Next Generation Sequencing

Vor 10 Jahren • 3768 Aufrufe

Sequencing: The Next Generation

Vor 9 Jahren • 3587 Aufrufe

ICAR Soybean Indore 2014

Vor 9 Jahren • 1941 Aufrufe

Sequencing, Genome Assembly and the SGN Platform

Vor 9 Jahren • 5281 Aufrufe

Quality Control of NGS Data Solutions

Vor 9 Jahren • 948 Aufrufe

Quality Control of NGS Data

Vor 9 Jahren • 2522 Aufrufe

Sequencing

Vor 9 Jahren • 802 Aufrufe

Tomato Genome SL2.50 and Beyond…

Vor 9 Jahren • 1473 Aufrufe

Sequencing: The Next Generation 2015

Vor 9 Jahren • 6461 Aufrufe

Quality Control of Sequencing Data

Vor 9 Jahren • 1519 Aufrufe

Sequencing and Bioinformatics PGRP Summer 2015

Vor 8 Jahren • 876 Aufrufe

Tomato Genome Build SL3.0

Vor 8 Jahren • 1300 Aufrufe

Sequencing 2016

Vor 8 Jahren • 1682 Aufrufe

Using Long Reads, Optical Maps and Long-Range Scaffolding to improve the Diaphorina citri Genome: An update

Vor 7 Jahren • 948 Aufrufe

CitrusCyc: Metabolic Pathway Databases for the C. clementina and C. sinensis Genomes

Vor 7 Jahren • 1383 Aufrufe

Community resources for all y’all Omics

Vor 7 Jahren • 370 Aufrufe

Sequencing 2017

Vor 7 Jahren • 4528 Aufrufe

Quality Control of Sequencing Data

Vor 7 Jahren • 475 Aufrufe

Deciphering the genome of Diaphorina citri to develop solutions for the citrus greening disease

Vor 6 Jahren • 256 Aufrufe

Visualization of insect vector-plant pathogen interactions in the citrus greening pathosystem using genomics, transcriptomics and proteomics

Vor 5 Jahren • 501 Aufrufe

AgriVectors: A Data and Systems Resource for Arthropod Vectors of Plant Diseases

Vor 5 Jahren • 445 Aufrufe

Updates on the ACP v3 genome and annotation from USDA NIFA project meeting

Vor 4 Jahren • 197 Aufrufe

Updates on Citrusgreening.org database from USDA NIFA project meeting

Vor 4 Jahren • 161 Aufrufe

Saha UC Davis Plant Pathology seminar Infrastructure for battling the Citrus Greening (HLB) disease: High quality genomes and an open access integrated systems biology portal

Vor 4 Jahren • 113 Aufrufe

Functional annotation of invertebrate genomes

Vor 3 Jahren • 342 Aufrufe

An open access resource portal for arthropod vectors and agricultural pathosystems: Agrivectors.org

Vor 2 Jahren • 118 Aufrufe

Gefällt mir

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Assembly: before and after

Lex Nederbragt • Vor 10 Jahren

MicrobeDB Overview

Morgan Langille • Vor 14 Jahren

Folker Meyer: Metagenomic Data Annotation

GigaScience, BGI Hong Kong • Vor 12 Jahren

Jonathan Eisen talk at Lake Arrowhead Microbial Genomics Mtg #LAMG10

Jonathan Eisen • Vor 13 Jahren
Personal Information
Unternehmen/Arbeitsplatz
Ithaca, New York Area United States
Beruf
Senior Bioinformatics Analyst (DevOps)
Branche
Medical / Health Care / Pharmaceuticals
Info
Working with a cross-matrixed team of molecular and computational biologists on a variety of vector biology, genome assembly, annotation, proteomics, metagenomics, microbiome and transcriptomics projects. Specialties: Computer Science skills: System administration, Virtualization, Machine learning, Artificial Intelligence, Association rule mining, Open source tools, Object oriented programming, Graph theory, Cloud computing and Cluster computing. Biological domains: Comparative Genomics, RNAseq, Microbiome, Proteomics, Metagenomics, Annotation, Repeat/Transposon discovery and characterization, Assembly, PCR, SSR analysis. Languages and tools: Linux, Perl (BioPerl, DBIx::Class, Moose),...
Tags
sequencing citrus database citrusgreening pacbio genomics rnaseq assembly bioinformatics genome illumina insect disease hlb annotation plant bionano quality control psyllid transcriptome pathway pathways fastq nanopore ngs arthropod isoseq genes proteins scaffolding 10x vector web tomato tutorial command-line interface solgenomics genotyping sanger biology metagenomics pipeline docker agriculture science open source open data visual expression webinar metabolites biocyc canu dovetail big data nexgen linux pag2015 cassava gbs technology error ngs bioinformatics citrusgreening microbiome genom microbiome endosymbionts workflow its tools 16s
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