Surya Saha

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Working with a cross-matrixed team of molecular and computational biologists on a variety of vector biology, genome assembly, annotation, proteomics, metagenomics, microbiome and transcriptomics projects. Specialties: Computer Science skills: System administration, Virtualization, Machine learning, Artificial Intelligence, Association rule mining, Open source tools, Object oriented programming, Graph theory, Cloud computing and Cluster computing. Biological domains: Comparative Genomics, RNAseq, Microbiome, Proteomics, Metagenomics, Annotation, Repeat/Transposon discovery and characterization, Assembly, PCR, SSR analysis. Languages and tools: Linux, Perl (BioPerl, DBIx::Class, Moose),...

sequencing citrus database citrusgreening pacbio genomics rnaseq assembly bioinformatics genome illumina insect disease hlb annotation plant bionano quality control psyllid transcriptome pathway pathways fastq nanopore ngs arthropod isoseq genes proteins scaffolding 10x vector web tomato tutorial command-line interface solgenomics genotyping sanger biology metagenomics pipeline docker agriculture science open source open data visual expression webinar metabolites biocyc canu dovetail big data nexgen linux pag2015 cassava gbs technology error ngs bioinformatics citrusgreening microbiome genom microbiome endosymbionts workflow its tools 16s

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Surya Saha

Assembly: before and after

MicrobeDB Overview

Folker Meyer: Metagenomic Data Annotation

Jonathan Eisen talk at Lake Arrowhead Microbial Genomics Mtg #LAMG10