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Bioinformatics Career Day 2012




    Shinichi Sunagawa
    Bork Group
    www.sunagawa.de
    EMBL Heidelberg
                            EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
Current Role
Since Jan 2012 (after 1.5 years postdoc)
• Research Scientist at Bork Group: Computational Biology
   - Network biology
   - Comparative genomics
   - Metagenomics

• Responsibilities
   - coordinate / manage metagenomics projects




       Qin et al. 2010, Nature; Arumugam et al. 2011, Nature   Karsenti et al. 2011, PLoS Biology

    - support progress of PhD students and postdocs
    - own research projects
                                                                    EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
Background / atypical career path?
Diploma - Biochemistry
MSc / PhD - Aquatic Ecology / Quantitative and Systems Biology




                                       Started programming in 2006


                            PhD 2010

                                       EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
Today and outlook
Typical activity
  - using and developing programs to analyze DNA sequencing data
                          What attracted me to this position?
                             • exciting projects
                             • from data generation to data analysis
                             • diversification of skill-set
                             • springboard to independent researcher

What do I enjoy most about my job?
   • perspective to find out something useful




Two cents for future bioinformaticians:
    • in many, if not most areas of biology, computers keep gaining importance
                                         EBI / DKFZ: Bioinformatics Career Day – 24 May 2012

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P4 training and_life_as_a_postdoc_(shinichi_sunagawa)

  • 1. Bioinformatics Career Day 2012 Shinichi Sunagawa Bork Group www.sunagawa.de EMBL Heidelberg EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
  • 2. Current Role Since Jan 2012 (after 1.5 years postdoc) • Research Scientist at Bork Group: Computational Biology - Network biology - Comparative genomics - Metagenomics • Responsibilities - coordinate / manage metagenomics projects Qin et al. 2010, Nature; Arumugam et al. 2011, Nature Karsenti et al. 2011, PLoS Biology - support progress of PhD students and postdocs - own research projects EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
  • 3. Background / atypical career path? Diploma - Biochemistry MSc / PhD - Aquatic Ecology / Quantitative and Systems Biology Started programming in 2006 PhD 2010 EBI / DKFZ: Bioinformatics Career Day – 24 May 2012
  • 4. Today and outlook Typical activity - using and developing programs to analyze DNA sequencing data What attracted me to this position? • exciting projects • from data generation to data analysis • diversification of skill-set • springboard to independent researcher What do I enjoy most about my job? • perspective to find out something useful Two cents for future bioinformaticians: • in many, if not most areas of biology, computers keep gaining importance EBI / DKFZ: Bioinformatics Career Day – 24 May 2012