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The use of WPS in a Science Collaboration Environment  implementation of a Greenhouse Gas Emissions model
Topics Introduce Landcare Research Our Vision Architecture Model implementation Closing thoughts Previous slide: Cloud Gate, Chicago. Photo: Niels Hoffmann
Manaaki Whenua - Manaaki Tangata care for the land - care for the people http://www.landcareresearch.co.nz Sustaining biodiversity & restoration Sustaining land environments Sustaining business & living Climate change Maori sustainable futures Weeds, pests and diseases Capability and collaboration Landcare Research Manaaki Whenua Key outcomes Cross-cutting outcomes Underpinning strengths
LRIS: Land Resource Information System 1978-2008+ NZLRI NZLRI NSD Soil DB S-map Soil DB : National Coverage of Environmental Data at 1:50:000 to 15m resolution : Leading the Implementation of geospatial    web-delivery in NZ S-Map soil NZLRI ECOSAT veg Curvature horiz Curvature perp Curvature slope S-map Landform Elements S-map siblings S-map pedo-func S-map variability Height Aspect Slope FSL:Phys FSL:Chem FSL:Wet FSL:Env NZEEM Soil loss tons/ha/yr ECOSAT fPAR ECOSAT Woody ECOSAT Indig. Forest PinRadGrow FertReq StockCCap LUNZ &  LENZ Rock Slope Soil Erosion Veg LUC
Observations Data and Computational pressure: NOW – 25m national data density  NEAR FUTURE – sub 5m national data density with significant peri-urban sub 1m LIDAR data density Modelling environment NOW – essentially batch oriented & 2.5D DESIRED – interactive 4D, with real-time visualisation feedback Managed data NOW – preserve the data, memorise the model DESIRED – keep the model for on-demand re-use
The Vision: SCENZ-Grid SCE NZ-Grid proposes that we can: Do science research on-line together   Share each other’s data – not duplicate it Collaboratively develop & use shared models / workflows  Use shared compute resources Connect researchers directly to consumers : policy / managers / educators / public
Phase 1: Regolith Portlet REANNZ funded project (2007-2009):  GNS and Landcare Research  QMAP WMS NZFSL WMS Lookup WS Portal User WF Engine User Interface View Portlet WebService WorkFlow Engine Model Kepler  Mono / Java class Web Services Data: WMS Business Logic: SOAP
Phase 2: Platform FRST Backbone funding and BeSTGRID integration (2009-)
'SDI' ,[object Object],[object Object],[object Object]
WPS Geoserver Globus / Grisu ~1.16 TFLOPS Air cooled Gb Ethernet nterconnects 4.2kW power 104 Intel Xeon cores 2.8GHz each 386GB RAM 2.6TB storage
WPS Extensions: Computation - Collaboration WPS – G Current: Unicore, Gridgain Planning to implement Grisu => waiting for  release v3 WPS – T Started porting to Apache ODE 80% complete, need to refactor the execute part  to use the new(er) architecture
LCR Algorithm Repository LCR (Landcare Research) Specific algorithms Raster implementations: Emissions Modeling Landcare repository Sextante repository
Modularity ,[object Object]
Parsers: problem with xml parser ,[object Object]
Emissions Algorithm - inputs ,[object Object]
[object Object],<ows:Identifier>org.n52.wps.server.lcr.algorithm.EmissionsAlgorithm</ows:Identifier> <DataInputs> <ows:Identifier> landuse </ows:Identifier> <MimeType>image/tiff</MimeType> <ows:Identifier> districts </ows:Identifier> <MimeType>image/tiff</MimeType> <ows:Identifier> emissionslookup </ows:Identifier> <MimeType>text/XML</MimeType> <Schema>http://arwen/schemas/EmissionsTable.xsd</Schema> <ows:Identifier> stockingrate </ows:Identifier> <MimeType>text/XML</MimeType> <Schema>http://arwen/schemas/EmissionsTable.xsd</Schema> <ows:Identifier> districtlookup </ows:Identifier> <MimeType>text/XML</MimeType> <Schema> http://arwen/schemas/EmissionsTable.xsd </Schema> <ows:Identifier>result</ows:Identifier> <MimeType>image/tiff</MimeType> </ProcessDescription> Emissions Algorithm – link Value Attribute Table for Landuse and  Districts ,[object Object]
Current Issues ,[object Object]
No checking for CRS validity ,[object Object],[object Object],[object Object]
Closing thoughts (1) ,[object Object]

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Ifgi presentation

  • 1. The use of WPS in a Science Collaboration Environment implementation of a Greenhouse Gas Emissions model
  • 2. Topics Introduce Landcare Research Our Vision Architecture Model implementation Closing thoughts Previous slide: Cloud Gate, Chicago. Photo: Niels Hoffmann
  • 3. Manaaki Whenua - Manaaki Tangata care for the land - care for the people http://www.landcareresearch.co.nz Sustaining biodiversity & restoration Sustaining land environments Sustaining business & living Climate change Maori sustainable futures Weeds, pests and diseases Capability and collaboration Landcare Research Manaaki Whenua Key outcomes Cross-cutting outcomes Underpinning strengths
  • 4. LRIS: Land Resource Information System 1978-2008+ NZLRI NZLRI NSD Soil DB S-map Soil DB : National Coverage of Environmental Data at 1:50:000 to 15m resolution : Leading the Implementation of geospatial web-delivery in NZ S-Map soil NZLRI ECOSAT veg Curvature horiz Curvature perp Curvature slope S-map Landform Elements S-map siblings S-map pedo-func S-map variability Height Aspect Slope FSL:Phys FSL:Chem FSL:Wet FSL:Env NZEEM Soil loss tons/ha/yr ECOSAT fPAR ECOSAT Woody ECOSAT Indig. Forest PinRadGrow FertReq StockCCap LUNZ & LENZ Rock Slope Soil Erosion Veg LUC
  • 5. Observations Data and Computational pressure: NOW – 25m national data density NEAR FUTURE – sub 5m national data density with significant peri-urban sub 1m LIDAR data density Modelling environment NOW – essentially batch oriented & 2.5D DESIRED – interactive 4D, with real-time visualisation feedback Managed data NOW – preserve the data, memorise the model DESIRED – keep the model for on-demand re-use
  • 6. The Vision: SCENZ-Grid SCE NZ-Grid proposes that we can: Do science research on-line together Share each other’s data – not duplicate it Collaboratively develop & use shared models / workflows Use shared compute resources Connect researchers directly to consumers : policy / managers / educators / public
  • 7. Phase 1: Regolith Portlet REANNZ funded project (2007-2009): GNS and Landcare Research QMAP WMS NZFSL WMS Lookup WS Portal User WF Engine User Interface View Portlet WebService WorkFlow Engine Model Kepler Mono / Java class Web Services Data: WMS Business Logic: SOAP
  • 8. Phase 2: Platform FRST Backbone funding and BeSTGRID integration (2009-)
  • 9.
  • 10. WPS Geoserver Globus / Grisu ~1.16 TFLOPS Air cooled Gb Ethernet nterconnects 4.2kW power 104 Intel Xeon cores 2.8GHz each 386GB RAM 2.6TB storage
  • 11. WPS Extensions: Computation - Collaboration WPS – G Current: Unicore, Gridgain Planning to implement Grisu => waiting for release v3 WPS – T Started porting to Apache ODE 80% complete, need to refactor the execute part to use the new(er) architecture
  • 12. LCR Algorithm Repository LCR (Landcare Research) Specific algorithms Raster implementations: Emissions Modeling Landcare repository Sextante repository
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19.
  • 20.
  • 21. No easy solution for splitting (spatial) problems
  • 22. split/merge might still be the bottleneck
  • 23. Questions ? [email_address] Milford Sound, NZ. Photo: Niels Hoffmann