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NIF Services Overview and Demo
Davis Banks (davis.e.banks@gmail.com)
Chris Condit (condit@sdsc.edu)
NIF Data Holding Overview
• A curated index of electronic resources
– Literature (Pubmed with OpenAccess) (≈90GB)
– Data Federation (≈110GB)
– A registry of web resources (nlx_149407-1)
• Ontoquest
Service Overview
• http://nif-services.neuinfo.org/services/
• Literature
– Search, get by PMID, “more like”, sections, RIS
• Federation
– Search, paged data, facets, CSV
• Ontology
• Vocabulary
• Lexical (Lingpipe or OpenNLP (soon))
– Sentences, POS, chunks (PMIDS), entities
• Latent Dirichlet Allocation
– PMIDs / chunks
• Annotation
– URL or text
Implementation Details
• Java 7
• Jersey 1.17.1 (JAX-RS)
• Solr 4.3.1 (Solr Cloud (soon))
• Open source (soon?)

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NIF services overview

  • 1. NIF Services Overview and Demo Davis Banks (davis.e.banks@gmail.com) Chris Condit (condit@sdsc.edu)
  • 2. NIF Data Holding Overview • A curated index of electronic resources – Literature (Pubmed with OpenAccess) (≈90GB) – Data Federation (≈110GB) – A registry of web resources (nlx_149407-1) • Ontoquest
  • 3. Service Overview • http://nif-services.neuinfo.org/services/ • Literature – Search, get by PMID, “more like”, sections, RIS • Federation – Search, paged data, facets, CSV • Ontology • Vocabulary • Lexical (Lingpipe or OpenNLP (soon)) – Sentences, POS, chunks (PMIDS), entities • Latent Dirichlet Allocation – PMIDs / chunks • Annotation – URL or text
  • 4. Implementation Details • Java 7 • Jersey 1.17.1 (JAX-RS) • Solr 4.3.1 (Solr Cloud (soon)) • Open source (soon?)

Hinweis der Redaktion

  1. Compared to Pub Med (22,000,000 records)