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Precision Medicine
In Pediatric Oncology
Giselle Sholler MD
Neuroblastoma & Medulloblastoma Translational Research Consortium
Helen DeVos Children’s Hospital/SHMG
Francis Eshun
Deanna Mitchell
Jessica Foley
Andre Bachmann
Rick Neubig
Don Eslin
Nehal Parikh
William Ferguson
Jeffrey Trent
John Carpten
David Craig
William Roberts
Jacqueline Kraveca
Giselle Sholler, MD
Helen DeVos Children’s
Hospital / MSU
Joel Kaplan
Jeffrey Bond
Kathleen A. Neville
Timothy Triche
Douglas Hawkins
Devang Pastakia
Sharon Lockhart
Mark Fluchel
Peter Zage
Neuroblastoma and Medulloblastoma
Translational Research Consortium
Valerie Brown
Randy Wada
Susan Sencer
Michael Kelley
Gregory Hale
Ted Laetsch
Daniel Weiser
Lars Wagner
Nilay Shah
Identify Patient-
Tailored Drug
Therapies
Biopsy of Tumor
Molecular Guided Therapy
Trial for Pediatric Cancer
Multicenter study to evaluate molecularly guided therapy
using DNA exome and RNA sequencing analysis in
patients with relapsed or refractory childhood cancers.
• Enrollment
• Consent
• RNA
sequencing
• DNA Exomes
• Report (Sholler)
• Safety
evaluation
• Medical Monitor
Review
MSU
Medical History
Presented at 4 months old with metastatic Choroid Plexus
Carcinoma (CPC) in R ventricle with + CSF, and
leptomeningeal disease
 Initial Treatment
 Complete tumor resection
 11 cycles Chemotherapy
Treatment of Recurrent CPC
Recurrent metastatic tumor after 9 months
Tumor in R+L ventricle
Dates Rx Response
Sept-Nov 2012
(3 cycles)
Avastin/Irinotecan/
Temodar
Progressive tumor
Dec 2012 – Jan 2013
(2 cycles)
HD-Methotrexate and
Vincristine
Stable
March 2013
(2 cycles, 6 weeks)
Vincristine and
HD Carboplatin
Stable
April 2013
(4 cycles)
Ifosfamide
Etoposide
Stable
August – Sept 2013
(2 Cycles)
HD-Methotrexate and
Vincristine
Progressive disease: Stable tumor,
but CSF became positive with drop
mets to Cauda equina
MGT Trial
 Resection of R ventricular
tumor
 Sent for Molecular Testing
 Well tolerated
 Results within 10 days
 Patient started directly
onto MGT therapy
Multidisciplinary Tumor Board
Medical
Monitor
Patient
Treatment
Tumor Board
B
Pharmacists
PI’s at NMTRC
Sites Bioinformatics and
Genomics Experts
Medical Genetics Expert
Pathologist
BRadiologist
MGT Treatment
Target/Pathway Medication
FGF2
fibroblast growth factor 2
Thalidomide
PDGFB
platelet derived growth factor
Sunitinib
HDAC3 HDAC8
Histone deacetylase
Vorinostat
MTOR pathway genes
mammalian target of Rapamycin
Sirolimus
Start of MGT 6 months 20 months
Response to MGT
Residual tumor left brain <12% of original tumor volume
September 2013 March 2014 June 2015
High Risk Neuroblastoma at Diagnosis
 MGT : Incorporate targeted agent into chemotherapy
20% are refractory – needs improvement
 Diagnostic biopsy sent for:
 Standard pathology testing
 TGen for DNA exomes, RNA sequencing, ODC SNP
 Sholler lab for cell line generation and xenografts
 Tumor Board adds targeted agent to cycles 2- chemo
 Surgery (re-sequence)
 Transplant
 Radiation
 Antibody Therapy
 Maintenance with DFMO -50% relapse still
Maintenance
with DFMO
Add to
Standard
Treatments
Genomic
Analysis for
Tailored
Therapy
Targeted agent choices
(rank/z-score -considerations)
 Vorinostat  HDAC pathway
 Bortezomib  NFKB pathway
 Crizotinib  ALK mutation or overexpression
 Sorafenib  FLT3, RET, KIT, KDR, PDGFRA/B, BRAF
 Dasatinib SRC, PDGFRA/B, KIT, FYN, BTK, CSFR1
 Lapatinib EGFR
Plate Layout and
Dilutions
Designed in Collaboration with Rick Neubig and Tom Dexheimer
Performed by Tom Dexheimer
Dilution 2.5-fold dilutions
1 100 uM
2 40 uM
3 16 uM
4 6.4 uM
5 2.56 uM
6 1.024 uM
7 0.4096 uM
8 0.16384 uM
9 0.065536 uM
10 0.0262144 uM
11 0.01048576 uM
12 0.004194304 uM
13 0.001677722 uM
14 0.000671089 uM
15 0.000268435 uM
16 0.000107374 uM
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Lapatinib
Lapatinib
Crizotinib
Crizotinib
Vorinostat(SAHA)
Vorinostat(SAHA)
Vorinostat(SAHA)
Lapatinib
Dasatinib
Dasatinib
Sorafenib
Sorafenib
Sorafenib
Crizotinib
Vehicle
Vehicle
Bortezomib(Velcade)
Bortezomib(Velcade)
Bortezomib(Velcade)
Dasatinib
Correlation
between
PDGFRB
expression and
response to
dasatinib
Acknowledgments
Sholler Lab: Genevieve Bergendahl, CRN
Alyssa Vander Werff, CRA
Monica Fleeman, CRA
Ping Zhao, PhD
Tracey Avequin
Elizabeth VanSickle
David Hayes
HITC: Shannon MacKeigan
Julie Steinbrecher
Craig Vandellen
Josh Havemann
Genomics Core: Jeff Bond, PhD
Abhinav Beeravally, MSc
Research Team: Jeffrey Trent, PhD
Andre Bachmann, PhD
Melinda Merchant, MD, PhD
William Ferguson, MD
Bill Roberts, MD
Deanna Mitchell, MD
Jessica Foley, MD
Joel Kaplan, DO, MPH
Jackie Kraveka, MD
Amy Lee Bredlau, MD
Don Eslin, MD
Nehal Parikh, MD
Melinda Merchant, MD
Kathleen Neville, MD
Valerie, Brown, MD
Francis Eshun, MD
Sharon Lockhart, MD
Susan Sencer, MD
Mark Fluchel, MD
Randy Wada, MD
Peter Zage, MD
Pam Kidd, MD
Al Cornelius, MD
Rick Neubig, MD, PhD
Tom Dexheimer, PhD
TransMed –Jeremy Miller
NMTRC Pediatric Cancer Heroes, Advocates, and
Supporters. WE THANK YOU!
Swifty
Foundatio
n

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Precision Medicine In Pediatric Oncology

  • 1. Precision Medicine In Pediatric Oncology Giselle Sholler MD Neuroblastoma & Medulloblastoma Translational Research Consortium Helen DeVos Children’s Hospital/SHMG
  • 2. Francis Eshun Deanna Mitchell Jessica Foley Andre Bachmann Rick Neubig Don Eslin Nehal Parikh William Ferguson Jeffrey Trent John Carpten David Craig William Roberts Jacqueline Kraveca Giselle Sholler, MD Helen DeVos Children’s Hospital / MSU Joel Kaplan Jeffrey Bond Kathleen A. Neville Timothy Triche Douglas Hawkins Devang Pastakia Sharon Lockhart Mark Fluchel Peter Zage Neuroblastoma and Medulloblastoma Translational Research Consortium Valerie Brown Randy Wada Susan Sencer Michael Kelley Gregory Hale Ted Laetsch Daniel Weiser Lars Wagner Nilay Shah
  • 4. Molecular Guided Therapy Trial for Pediatric Cancer Multicenter study to evaluate molecularly guided therapy using DNA exome and RNA sequencing analysis in patients with relapsed or refractory childhood cancers. • Enrollment • Consent • RNA sequencing • DNA Exomes • Report (Sholler) • Safety evaluation • Medical Monitor Review MSU
  • 5. Medical History Presented at 4 months old with metastatic Choroid Plexus Carcinoma (CPC) in R ventricle with + CSF, and leptomeningeal disease  Initial Treatment  Complete tumor resection  11 cycles Chemotherapy
  • 6. Treatment of Recurrent CPC Recurrent metastatic tumor after 9 months Tumor in R+L ventricle Dates Rx Response Sept-Nov 2012 (3 cycles) Avastin/Irinotecan/ Temodar Progressive tumor Dec 2012 – Jan 2013 (2 cycles) HD-Methotrexate and Vincristine Stable March 2013 (2 cycles, 6 weeks) Vincristine and HD Carboplatin Stable April 2013 (4 cycles) Ifosfamide Etoposide Stable August – Sept 2013 (2 Cycles) HD-Methotrexate and Vincristine Progressive disease: Stable tumor, but CSF became positive with drop mets to Cauda equina
  • 7. MGT Trial  Resection of R ventricular tumor  Sent for Molecular Testing  Well tolerated  Results within 10 days  Patient started directly onto MGT therapy
  • 8. Multidisciplinary Tumor Board Medical Monitor Patient Treatment Tumor Board B Pharmacists PI’s at NMTRC Sites Bioinformatics and Genomics Experts Medical Genetics Expert Pathologist BRadiologist
  • 9. MGT Treatment Target/Pathway Medication FGF2 fibroblast growth factor 2 Thalidomide PDGFB platelet derived growth factor Sunitinib HDAC3 HDAC8 Histone deacetylase Vorinostat MTOR pathway genes mammalian target of Rapamycin Sirolimus
  • 10.
  • 11. Start of MGT 6 months 20 months Response to MGT Residual tumor left brain <12% of original tumor volume September 2013 March 2014 June 2015
  • 12. High Risk Neuroblastoma at Diagnosis  MGT : Incorporate targeted agent into chemotherapy 20% are refractory – needs improvement  Diagnostic biopsy sent for:  Standard pathology testing  TGen for DNA exomes, RNA sequencing, ODC SNP  Sholler lab for cell line generation and xenografts  Tumor Board adds targeted agent to cycles 2- chemo  Surgery (re-sequence)  Transplant  Radiation  Antibody Therapy  Maintenance with DFMO -50% relapse still Maintenance with DFMO Add to Standard Treatments Genomic Analysis for Tailored Therapy
  • 13. Targeted agent choices (rank/z-score -considerations)  Vorinostat  HDAC pathway  Bortezomib  NFKB pathway  Crizotinib  ALK mutation or overexpression  Sorafenib  FLT3, RET, KIT, KDR, PDGFRA/B, BRAF  Dasatinib SRC, PDGFRA/B, KIT, FYN, BTK, CSFR1  Lapatinib EGFR
  • 14. Plate Layout and Dilutions Designed in Collaboration with Rick Neubig and Tom Dexheimer Performed by Tom Dexheimer Dilution 2.5-fold dilutions 1 100 uM 2 40 uM 3 16 uM 4 6.4 uM 5 2.56 uM 6 1.024 uM 7 0.4096 uM 8 0.16384 uM 9 0.065536 uM 10 0.0262144 uM 11 0.01048576 uM 12 0.004194304 uM 13 0.001677722 uM 14 0.000671089 uM 15 0.000268435 uM 16 0.000107374 uM 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 A B C D E F G H I J K L M N O P Lapatinib Lapatinib Crizotinib Crizotinib Vorinostat(SAHA) Vorinostat(SAHA) Vorinostat(SAHA) Lapatinib Dasatinib Dasatinib Sorafenib Sorafenib Sorafenib Crizotinib Vehicle Vehicle Bortezomib(Velcade) Bortezomib(Velcade) Bortezomib(Velcade) Dasatinib
  • 16. Acknowledgments Sholler Lab: Genevieve Bergendahl, CRN Alyssa Vander Werff, CRA Monica Fleeman, CRA Ping Zhao, PhD Tracey Avequin Elizabeth VanSickle David Hayes HITC: Shannon MacKeigan Julie Steinbrecher Craig Vandellen Josh Havemann Genomics Core: Jeff Bond, PhD Abhinav Beeravally, MSc Research Team: Jeffrey Trent, PhD Andre Bachmann, PhD Melinda Merchant, MD, PhD William Ferguson, MD Bill Roberts, MD Deanna Mitchell, MD Jessica Foley, MD Joel Kaplan, DO, MPH Jackie Kraveka, MD Amy Lee Bredlau, MD Don Eslin, MD Nehal Parikh, MD Melinda Merchant, MD Kathleen Neville, MD Valerie, Brown, MD Francis Eshun, MD Sharon Lockhart, MD Susan Sencer, MD Mark Fluchel, MD Randy Wada, MD Peter Zage, MD Pam Kidd, MD Al Cornelius, MD Rick Neubig, MD, PhD Tom Dexheimer, PhD TransMed –Jeremy Miller
  • 17. NMTRC Pediatric Cancer Heroes, Advocates, and Supporters. WE THANK YOU! Swifty Foundatio n