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Scientific and Technical Information and Rural Development
                      IAALD XIIIth World Congress
                       Montpellier, 26-29 April 2010




             Innovative i f
             I     ti information systems
                                ti    t
enabling public research organizations and the livestock
                   industry in France
       to share animal health resources and skills


                                                                    Marie-Colette Fauré
                                                           INRA - Animal Health division
                                                                                   April 2010

                                                         Marie-Colette.Faure@toulouse.inra.fr
Introduction
Background


Agricultural activities including livestock productions
sector have to deal with crises and mutations

        Sector becoming increasingly complex
        Health crises : BSE SARS foot and mouth disease, avian
                         BSE, SARS,              disease
            influenza…
        Growing need for knowledge and increasing amount of
            available information




Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Aims of the Animal Health Division of Inra*
                                       Inra


  The main aim : to carry out fundamental works and
  targeted research in the area of animal health

  A targeted research mandate : to set up on-going
  and organized links with the livestock production
  industry in France (socio-professional partnership)

           To find out needs from professionals (to identify key
                research topics)
           To make known its field of competence and expertise and
                to explain its results
           T provide reliable and accessible iinformation
            To    id    li bl    d       ibl     f     i
*INRA : The french National Institute for Agricultural Research
    Marie-Colette Fauré – IAALD 2010, Montpellier (France)
A current awareness system

A project for an interactive and organized relationship
   between AHD and livestock production sector.

       To improve visibility to animal health and veterinary public
            organization
                Complexity of the animal health and veterinary public health
                 organization in France
                A wide variety of entities involved


       To share and disseminate relevant information

       To develop inter-professional collaboration through
                 p       p                               g
            internet.
Marie-Colette Fauré – IAALD 2010, Montpellier (France)
CERISA and VELISA (1)
      AHD T l available on th I t
          Tools   il bl    the Internet
                                      t

--> Main outcome of AHD’s socio-professional
current-awareness process on Internet.

Easy-access tools for direct use by professionals

 Tools based on Web 2.0 technologies :
       possibilities of geolocation
       syndication feed to make information available in real time
            or to syndicate the content of other sites
       ergonomic interfaces.



Marie-Colette Fauré – IAALD 2010, Montpellier (France)
How do we manage these projects ?
A reference terminology : a helpful tool for the
              design f
              d i of CERISA

  Structuring role of the reference terminology of
  animal diseases

  The purpose of a reference terminology
          Organizing the collection phase
          Consoladating the information processing phase
          Simplifying access to the information access for
               professionals




   Marie-Colette Fauré – IAALD 2010, Montpellier (France)
The construction process



                                                          Pathogen (s))      Type of disease

                                        Disease
                                    (selected term)
                                                         Additional note
Animal species                        Synonym (s)
                                   Common term(s)
                                       Acronym             Zoonosis ?
                                           …

                                                         Regulatory status




Marie-Colette Fauré – IAALD 2010, Montpellier (France)
An exemple

         Rabbit
                                       Attention : Exemple traduit

      Tularemia                          Francisella tularensis   Bacterium
   Pahvant Valley plague
       Rabbit fever
      Deer fly fever
      Ohara's fever                      Zoonosis  : yes
      Additional note :
      Additi     l t
  Few clinical manifestation
        for the rabbit
   (Oryctolagus cuniculus),
  more frequent for the hare
(Lepus europeaus ou timidus)




 Regulatory status
 •Disease notifiable to the OIE
 •Notifiable disease
 (french legislation)
 (f     hl i l i )
Reference terminology : a professional tool

       Terminology                                                    Use                     Portal

       Animal species



            Disease                                                                         Resources
                                                         Information selection
            Pathogen
            P th


       Type of disease
                                                                     Indexation            Stakeholders
            Regulatory                                                        Additional
              status                                                          Metadata

             Zoonosis




Knowledge               Professional
  base                      tool

            Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Reference terminology for user

Terminology                                                 Use            Portal

Animal species



   Disease                                                               Resources

  Pathogen
  P th
                                                  Navigation / Search
Type of disease
                                                                        Stakeholders
   Regulatory
     status


    Zoonosis




   Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Information management : Priority to quality


 Collecting and selecting information
         Collection phase organised with the terminology
              (prioritization of the diseases, terms of queries…)
         Selection criteria to objectivize the selection

 Processing and analysis to produce useful
 knowledge for professionals
     Analysing information about stakeholders involved (role,
              specialisation, skills…)
         Resources : full text, information accessible to a non-
              scientific but well-informed public, quality of the
              information…

  Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Disseminating and sharing information
CERISA - The animal health and veterinary public
                health
                h lth portal
                           t l

    To identify and access all the stakeholders working
    in animal health and veterinary public health in France

    To facilitate access to information in French on
    livestock diseases and pathogens per animal species

    To give professionals access to a “partner space”
    where they can exchange information.




    Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Partner space

                                Internal search engine


                                                                                Animal species
                                                                                        p
Navigation menu


                                         Disease or pathogen



                                                                                     Notifiable
                                                    Stakeholders                     diseases




                  Geolocation
                                                                           Animal health
                                                                              news




                                                               Seen in the specialized press
VELISA - a French-language current awareness
  and lit t
     d literature search t l f animal h lth
                       h tool for i l health

   To reference professional information about animal
   health found in professional veterinary or livestock
   research journals

   Based on this work to identify any emerging health
                  work,
   problems on farms

   To make known the regular contributions of AHD
   scientists to the professional literature.




    Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Articles written
by DSA scientists




  Keywords as
 navigation items




        RSS feeds

                    News
In conclusion


Projects based on a close collaboration between
scientists and IT professionals

New collaboration with other scientific or technical
organizations in France and French-speaking
                            French speaking
countries
       could add to the quality, maintenance and development of
        the system
Future development of the reference terminology on
the
th semantic web (Li k d d t )
        ti    b (Linked data)
       interoperability of the data and accessibility for the animal
        health and veterinary public health community

Marie-Colette Fauré – IAALD 2010, Montpellier (France)
Thank you for your attention

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Innovative information systems enabling public research organizations and the livestock industry in France to share animal health resources and skills

  • 1. Scientific and Technical Information and Rural Development IAALD XIIIth World Congress Montpellier, 26-29 April 2010 Innovative i f I ti information systems ti t enabling public research organizations and the livestock industry in France to share animal health resources and skills Marie-Colette Fauré INRA - Animal Health division April 2010 Marie-Colette.Faure@toulouse.inra.fr
  • 3. Background Agricultural activities including livestock productions sector have to deal with crises and mutations  Sector becoming increasingly complex  Health crises : BSE SARS foot and mouth disease, avian BSE, SARS, disease influenza…  Growing need for knowledge and increasing amount of available information Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 4. Aims of the Animal Health Division of Inra* Inra The main aim : to carry out fundamental works and targeted research in the area of animal health A targeted research mandate : to set up on-going and organized links with the livestock production industry in France (socio-professional partnership)  To find out needs from professionals (to identify key research topics)  To make known its field of competence and expertise and to explain its results  T provide reliable and accessible iinformation To id li bl d ibl f i *INRA : The french National Institute for Agricultural Research Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 5. A current awareness system A project for an interactive and organized relationship between AHD and livestock production sector.  To improve visibility to animal health and veterinary public organization  Complexity of the animal health and veterinary public health organization in France  A wide variety of entities involved  To share and disseminate relevant information  To develop inter-professional collaboration through p p g internet. Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 6. CERISA and VELISA (1) AHD T l available on th I t Tools il bl the Internet t --> Main outcome of AHD’s socio-professional current-awareness process on Internet. Easy-access tools for direct use by professionals  Tools based on Web 2.0 technologies :  possibilities of geolocation  syndication feed to make information available in real time or to syndicate the content of other sites  ergonomic interfaces. Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 7. How do we manage these projects ?
  • 8. A reference terminology : a helpful tool for the design f d i of CERISA Structuring role of the reference terminology of animal diseases The purpose of a reference terminology  Organizing the collection phase  Consoladating the information processing phase  Simplifying access to the information access for professionals Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 9. The construction process Pathogen (s)) Type of disease Disease (selected term) Additional note Animal species Synonym (s) Common term(s) Acronym Zoonosis ? … Regulatory status Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 10. An exemple Rabbit Attention : Exemple traduit Tularemia Francisella tularensis Bacterium Pahvant Valley plague Rabbit fever Deer fly fever Ohara's fever Zoonosis  : yes Additional note : Additi l t Few clinical manifestation for the rabbit (Oryctolagus cuniculus), more frequent for the hare (Lepus europeaus ou timidus) Regulatory status •Disease notifiable to the OIE •Notifiable disease (french legislation) (f hl i l i )
  • 11. Reference terminology : a professional tool Terminology Use Portal Animal species Disease Resources Information selection Pathogen P th Type of disease Indexation Stakeholders Regulatory Additional status Metadata Zoonosis Knowledge Professional base tool Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 12. Reference terminology for user Terminology Use Portal Animal species Disease Resources Pathogen P th Navigation / Search Type of disease Stakeholders Regulatory status Zoonosis Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 13. Information management : Priority to quality Collecting and selecting information  Collection phase organised with the terminology (prioritization of the diseases, terms of queries…)  Selection criteria to objectivize the selection Processing and analysis to produce useful knowledge for professionals  Analysing information about stakeholders involved (role, specialisation, skills…)  Resources : full text, information accessible to a non- scientific but well-informed public, quality of the information… Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 15. CERISA - The animal health and veterinary public health h lth portal t l To identify and access all the stakeholders working in animal health and veterinary public health in France To facilitate access to information in French on livestock diseases and pathogens per animal species To give professionals access to a “partner space” where they can exchange information. Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 16. Partner space Internal search engine Animal species p Navigation menu Disease or pathogen Notifiable Stakeholders diseases Geolocation Animal health news Seen in the specialized press
  • 17. VELISA - a French-language current awareness and lit t d literature search t l f animal h lth h tool for i l health To reference professional information about animal health found in professional veterinary or livestock research journals Based on this work to identify any emerging health work, problems on farms To make known the regular contributions of AHD scientists to the professional literature. Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 18. Articles written by DSA scientists Keywords as navigation items RSS feeds News
  • 19. In conclusion Projects based on a close collaboration between scientists and IT professionals New collaboration with other scientific or technical organizations in France and French-speaking French speaking countries  could add to the quality, maintenance and development of the system Future development of the reference terminology on the th semantic web (Li k d d t ) ti b (Linked data)  interoperability of the data and accessibility for the animal health and veterinary public health community Marie-Colette Fauré – IAALD 2010, Montpellier (France)
  • 20. Thank you for your attention