Tuning Apache HBase for Performance and Correctness

1. HBase Tuning
Performance and Correctness
Lars Hofhansl
Principal Architect, Salesforce (10 years!)
HBase, Phoenix Committer, PMC
Apache Incubator PMC
Apache Foundation Member
http://hadoop-hbase.blogspot.com/

3. Boring Topic
Experiment with Colorful Slides

4. Agenda
• HDFS
• HBase – Server
• HBase – Client
• Correctness
• Performance

5. HDFS
hdfs-site.xml

6. HDFS - Background
• Stores HBase WAL and HFiles
• No sync-to-disk by default
• Datanode writes tmp file, moves it into place
• Old data lost on power outage

7. HDFS Correctness Settings
• dfs.datanode.synconclose = true
(since Hadoop 1.1)
• mount ext4 with dirsync! Or use XFS
• You must do this!

8. HDFS Performance Settings
1. Sync behind writes
2. Stale Datanode Detection
3. Short Circuit Reads
4. Miscellaneous Settings

9. HDFS Sync Behind Writes
• Syncs partial blocks to disk – best effort
(OK, since blocks are immutable)
• Necessary with sync-on-close for performance
• Always enable this
• dfs.datanode.sync.behind.writes = true
(Since Hadoop 1.1)

10. Stale Datanodes - Background
• Datanodes (DNs) send block reports to the
Namenode (NN)
• After 10min(!) w/o a report, DN is declared dead
• NN will still direct reads and writes to those DNs
• Bad for recovery. Down by 1 DN by definition.
(every 3rd read/write goes to a bad DN)

11. Stale Datanodes - Detection
Don’t use a DN for read or write when it looks like it is
stale (default off)
• dfs.namenode.avoid.read.stale.datanode = true
• dfs.namenode.avoid.write.stale.datanode = true
• dfs.namenode.stale.datanode.interval = 30000
(default)

12. HDFS short circuit reads
Read local blocks directly without DN, when
RegionServers and DNs are co-located.
• dfs.client.read.shortcircuit = true
• dfs.client.read.shortcircuit.buffer.size = 131072
(important, OOM on direct buffers, default on 0.98+)
• hbase.regionserver.checksum.verify = true
(default on 0.98+)
• dfs.domain.socket.path
(local Unix domain socket, not group or world readable)

13. Misc HDFS tips
Keep DN running with some failed disks
• dfs.datanode.failed.volumes.tolerated = <N>
(tolerate losing this many disks)
Distribute data across disks at a DN
• dfs.datanode.fsdataset.volume.choosing.policy =
AvailableSpaceVolumeChoosingPolicy
(HDFS-1804 hit drives with more space with higher probability for writes when free space
differs by more than 10GB by default)

14. Misc HDFS settings
(just trust me on these)
• dfs.block.size = 268435456
(note that WAL is rolled at 95% of this)
• ipc.server.tcpnodelay = true
• ipc.client.tcpnodelay = true

15. Misc HDFS settings
(just trust me on these, really)
• dfs.datanode.max.xcievers = 8192
• dfs.namenode.handler.count = 64
• dfs.datanode.handler.count = 8
(match number of spindles)

17. HBase
RegionServer Settings
hbase-site.xml

18. Compactions

19. Compactions - Background
• Writes are buffered in the memstore
• Memstore contents flushed to disk as HFiles
• Need to limit # HFiles by rewriting small HFiles
into fewer larger ones
• Remove deleted and expired Cells
• Same data written multiple times => Write
Amplification!

20. Read vs. Write
• Read requires merging HFiles => fewer is
better
• Write throughput better with fewer
compactions => leads to more files
• Optimize for Read or Write, not both

21. Write Amplification
Vs.
Read Performance

22. Control the number of HFiles
• hbase.hstore.blockingStoreFiles = 10
(do not allow more flushes when there more than <N> files)
small for read, large for write, will stop flushes and writes
• hbase.hstore.compactionThreshold = 3
(number of files that starts a compaction)
small for read, large for write
• hbase.hregion.memstore.flush.size = 128
(max memstore size, default is good)
larger good for fewer compaction (watch Region Server heap)

23. Time Based Compactions
• HBase does time based major compactions
• expensive, always at wrong time
• hbase.hregion.majorcompaction = 604800000
(week, default)
• hbase.hregion.majorcompaction.jitter = 0.5 (½
week, default)

24. Memstore/Cache Sizing
• hbase.hregion.memstore.flush.size = 128
• hbase.hregion.memstore.block.multiplier
(allow single memstore to grow by this multiplier, good for heavy, bursty
writes)
• hbase.regionserver.global.memstore.upperLimit (0.98)
hbase.regionserver.global.memstore.size (1.0+)
(percent of heap, default 0.4, decrease for read heavy load)
• hfile.block.cache.size
(percent heap used for the block cache, default 0.4)

25. Autotune BlockCache vs. Memstores (1.0+)
HBASE-5349, not well tested, Must Experiment
• hbase.regionserver.global.memstore.size.{max|min}.range
• hfile.block.cache.size.{max|min}.range
• hbase.regionserver.heapmemory.tuner.class
• hbase.regionserver.heapmemory.tuner.period

26. Data Locality
• Essential for Short Circuit Reads
• hbase.hstore.min.locality.to.skip.major.compact
(compact even when unnecessary to restore locality)
• hbase.master.wait.on.regionservers.timeout
(allow master to wait a bit upon restart, so not all region go to the first servers
who sign in 30-90s is good. Default it 4.5s)
• Don’t use the HDFS balancer!

27. HBase
Column Family
Settings

28. Block Encoding
• NONE, FAST_DIFF, PREFIX, etc
• alter 'test', { NAME => 'cf',
DATA_BLOCK_ENCODING => 'FAST_DIFF' }
• Scan friendly, decodes as you scan
• Not so Get friendly (might need to decode many
previous Cells)
• Currently produces a lot of extra garbage
• Safe to enable, always

29. Compression
• NONE, GZIP, SNAPPY, etc
• create ’test', {NAME => ’cf', COMPRESSION => 'SNAPPY’}}
• Compresses entire blocks, not Scan or Get friendly
• Typically does not achieve much over block encoding
• Blocks cached decompressed, unless
hbase.block.data.cachecompressed = true
(more cache capacity, but every access needs decompressions)
• Need to test with your data

30. HFile Block Size
• Don’t confuse with HDFS block size!
• create ‘test′,{NAME => ‘cf′, BLOCKSIZE => ’4096'}
• Default 64k good compromise between Scans
and point Gets
• Increase for large Scans
• Decrease for many point gets
• Rarely want to change this, likely never > 1mb

31. RegionServer - Garbage Collection
(source: http://www.everystockphoto.com)

32. Weak Generational Hypothesis
Most Allocated Objects Die Young

33. Garbage Collection - Background
HotSpot manages four generations (CMS collector):
• Eden for all new objects
• Survivor I and II where surviving objects are promoted when
eden is collected
• Tenured space. Objects surviving a few rounds (16 by default)
of eden/survivor collection are promoted into the tenured
space
• Perm gen for classes, interned strings, and other more or less
permanent objects. (gone, finally, in JDK8)

34. Garbage Collection - HBase
• Garbage from operations is shortlived (single
RPC)
• Memstore is relatively long-lived
(allocated in 2mb chunks)
• Blockcache is long-lived
(allocation in 64k blocks)
• Deal with the “operational” garbage efficiently

35. Garbage Collection (CMS)
-Xmn512m
very small eden space
-XX:+UseParNewGC
collect eden in parallel
-XX:+UseConcMarkSweepGC
use the non-moving CMS collector
-XX:CMSInitiatingOccupancyFraction=70
start collecting when 70% of tenured gen is full, avoid collection under pressure
-XX:+UseCMSInitiatingOccupancyOnly
do not try to adjust CMS setting

36. RegionServer Machine Sizing

37. RegionServer Machine Sizing
• How much RAM/Heap?
• How many disks?
• What size of disk?
• Network?
• Number of cores?

38. RegionServer Disk/Java Heap ratio
• Disk/Heap ratio:
RegionSize / MemstoreSize *
ReplicationFactor *
HeapFractionForMemstores * 2
(assuming memstores on average ½ filled)
• 10gb/128mb * 3 * 0.4 * 2 = 192, with default
settings

39. RegionServer Disk/Java Heap ratio
• Each 192 bytes on disk need 1 byte of Heap
• With 32gb of heap, can barely fill 6T
disk/machine
(32gb * 192 = 6tb)
192?!
W.T.F.

40. How about 1gb regions?
1gb/128mb * 3 * 0.4 * 2 = 19

41. (source: http://www.everystockphoto.com)

42. RegionServer sizing configs
• hbase.hregion.max.filesize (default 10g is good)
• hbase.hregion.memstore.flush.size (default 128mb)
(decrease for read heavy loads)
• hbase.regionserver.maxlogs
(HDFS blocksize * 0.95 * <this> should larger than
0.4*JavaHeap)

43. RegionServer Hardware
• <= 6T disk space per machine
• Enough heap (~diskspace/200)
• Many cores are good. HBase is CPU intensive.
• Match network and disk throughput
(1ge and 24 disks is not good 125mb/s vs 2.4gb/s)
(10ge and 24 disks is OK, 1ge and 4 or 6 disks is OK)
• But… For reads with filters more disks are still better.

44. HBase Client Settings

45. Client/Server RPC chunk size
• No streaming RPC in HBase
• Can only asymptotically approach the
full network bandwidth
• Typical intra datacenter latency: 0.1ms-1ms
• Transmitting 2mb over 1ge: 150ms
• Transmitting 2mb over 10ge: 15ms

46. 2mb chunks between Client and Server are good
But, how Should I do that?

47. Client Chunk Size Settings
Write:
• hbase.client.write.buffer = 2mb (default write buffer, good)
Read
• Scan.setCaching(<n>) (default 100 rows)
(but… how large are the rows? Must guess!)
• hbase.client.scanner.max.result.size = 2mb (default scan
buffer, 0.98.12+ only)

48. Client
Consider RPC size * hbase.regionserver.handler.count for
server GC
Need to be able to ride over splits and region moves:
hbase.client.pause = 100
hbase.client.retries.number = 35
hbase.ipc.client.tcpnodelay = true

49. Replication (trust me)
• hbase.zookeeper.useMulti = true (needs ZK 3.4)
this one is important for correctness
Other defaults are good:
• replication.sleep.before.failover = 30000
• replication.source.maxretriesmultiplier = 300
• replication.source.ratio = 0.10

50. Linux
• Turn THP (Transparent Huge Pages) OFF
• Set Swappiness to 0
• Set vm.min_free_kbytes to AT LEAST 1GB (8GB on
larger systems, server allocation immediately)
• Set zone_reclaim_mode to 0
(one cache on NUMA)
• dirsync mount option for EXT4, or use XFS

51. Not Covered
• Security/Kerberos
• HA NameNode/QJM
• ZK/Disk Layout
• Obscure Configs
• Offheap Caching, G1 GC

52. (source: http://www.morguefile.com)

53. TL;DR:
• Enable HDFS Sync on close, Sync behind writes
• Mount EXT4 with dirsync
• Enabled Stale Datanode detection
• Tune HBase read vs. write load
• Set HFile block size for your load
• Get RPC Client/Server chunk size right

54. Thank You!
http://hadoop-hbase.blogspot.com/