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Data integration and visualization
1.
Lars Juhl Jensen Data
integration and visualization
2.
protein networks
3.
3+ years ahead
4.
STRING
5.
Huynen et al.,
Current Opinion in Structural Biology, 2000
6.
genomic context
7.
experimental data
8.
text mining
9.
~22 million abstracts
10.
~4 million full-text
articles
11.
comprehensive lexicon
12.
proteins
13.
small molecules
14.
compartments
15.
tissues
16.
diseases
17.
organisms
18.
environments
19.
orthographics variation
20.
flexible matching
21.
hyphens and spaces
22.
expansion rules
23.
singular vs. plural
24.
“black list”
25.
26.
relation extraction
27.
count co-mentioning
28.
within documents
29.
within paragraphs
30.
within sentences
31.
STRING
32.
Szklarczyk, Franceschini et
al., Nucleic Acids Research, 2011
33.
payload
34.
compartments.jensenlab.org
35.
COMPARTMENTS
36.
compartments.jensenlab.org
37.
TISSUES
38.
tissues.jensenlab.org
39.
DISEASES
40.
41.
visualization
42.
de Lichtenberg, Jensen
et al., Science, 2005
43.
Ciccarelli, Doerks et
al., Science, 2006
44.
von Mering et
al., Science, 2007
45.
Jensen & Bork,
Science, 2008
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