![[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],AIDA demonstration Uk-AHM, Nottingham, September 10, 2007 Bio AID Biological knowledge extraction for a Virtual Laboratory for e-Science](data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)
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Bio AID Biological knowledge extraction
- 1. with AIDA Biological knowledge extraction for a Virtual Laboratory for e-Science ( Bio AID ) Marco Roos , Scott Marshall, Sophia Katrenko, Edgar Meij, Willem van Hage, Pieter Adriaans AIDA demonstration Uk-AHM, Nottingham, September 10, 2007
- 3. Virtual Laboratory e-Science project
- 4. Wet laboratory analogy Data Data handling & Data integration Metadata Data analysis Data storage Expert knowledge
- 6. Main elements for experimentation Bioinformaticians point of view Computational experiment Processing Biological knowledge
- 7. Virtual laboratory main elements Bioinformaticians point of view Computational experiment Workflow technology Semantic web technology +
- 8. Biological motivation: Structure and function of chromatin Escherichia coli Mouse fibroblast (skin) cells
- 10. Biomedical knowledge repository 08/06/09 BioAID PubMed statistics http://www.ncbi.nlm.nih.gov/entrez >17 million citations >400,000 added/year ~70,000 searches/month … Does not compute Does not fit
- 11. Text mining 08/06/09 BioAID Biology Customized or personalized experiment Extracted knowledge I want to do it my way, use my models Carole Goble’s me -scientist
- 12. Bioinformatics and e-science 08/06/09 BioAID Single purpose, black box application Customized experiments with reusable components My component Your component My component Your component My component
- 13. The AIDA toolbox for knowledge extraction and knowledge management in a Virtual Laboratory for e-Science
- 14. Components of the AIDA toolbox used for Life Science knowledge extraction
- 15. 08/06/09 BioAID
- 16. 08/06/09 BioAID
- 17. Bio AID ‘watskeburt’ workflow 08/06/09 BioAID AIDA AIDA OMIM service (Japan) AIDA ‘ Taverna shim’ Taverna ‘shim’
- 18. Bio AID ‘watskeburt’ running 08/06/09 BioAID
- 19. Bio AID ‘watskeburt’ results 08/06/09 BioAID
- 20. Proto-ontology (Protégé Jambalaya plugin) 08/06/09 BioAID
- 21. Enriched ontology (snapshot) 08/06/09 BioAID
- 23. 08/06/09 BioAID For my research on crispiness of food products I need pictures of bread structure
- 24. Components of the AIDA toolbox used for Food Informatics
- 26. Food Resource Management System using AIDA services 08/06/09 BioAID
- 27. Food Resource Management System using AIDA services 08/06/09 BioAID
- 29. 08/06/09 BioAID Taverna RMS>
- 30. Food AID thesaurus workflow 08/06/09 BioAID
- 31. Food AID thesaurus workflow 08/06/09 BioAID
- 33. 08/06/09 BioAID
- 34. 08/06/09 BioAID
Hinweis der Redaktion
- We will demonstrate a biological application of the ‘Adaptive Information Disclosure Application’ toolbox, a toolbox that is of general purpose, but can be used for specific applications, such as life science.