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C 6: T C
   h    he hemistry of Life




6.1 - Atoms and T  heir
      Interactions
Section 6.1


      Inside This Section...
What is an Element?
What are Atoms?
2 Types of Chemical Bonds
Chemical Reactions
Section 6.1


           What is an Element?
A substance that can not be
broken down into smaller
particles.
 90 elements naturally occur on
 earth
 25 are essential to living things
 Each element is identified by a
 symbol
Section 6.1


             Elements




C = Carbon                            Na = Sodium
              Ca = Calcium
Section 6.1


                Elements




K = Potassium                                Fe = Iron
                N = Nitrogen
Section 6.1


Elements




 AU = Gold
Section 6.1


Trace Elements
     Elements that are present in small
     amounts in the human body.
       N,K,Ca, and Fe are a few examples
       Help control cell metabolism
       Plants obtain trace elements through their
       roots while animals obtain trace elements
       through what they eat.
Section 6.1


             What is an Atom?
The smallest part of an element
that still maintains all the
characteristics of that element.
The basic building blocks of all
matter
Section 6.1


               What is an Atom?
Nucleus: Center of the Atom
Electrons:
  The outer particles
  Negatively charged
Protons:
  Particles found in the nucleus
  Positively charged
Neutrons: Particles found in the nucleus that
have no charge.
Section 6.1


          What is an Atom?
Electron and Proton numbers are always the same


                                         Neutron (0)

  Electron (-)


                                         Proton (+)
Section 6.1


                Energy Levels

Regions around the nucleus that
the electrons travel.Atoms like to
have their outer most energy level
full.
Section 6.1


         Energy Levels & Electrons

Energy Level   # of Electrons
     1               2

     2               8

     3              18
Section 6.1


             What are Isotopes?
Atoms of the same element that have different numbers of
                      neutrons.
Section 6.1


            What are Isotopes?
Most carbon nuclei contain six neutrons
Some have 7 or 8
These three atoms are isotopes
We refer to the isotopes in terms of the combined total of
protons and neutrons
Carbon-12 has 6 protons and 6 neutrons
How many protons and neutrons does carbon-13 and carbon-
14 have??
Section 6.1


Problem Solving Lab 6.1

           Read Problem Solving Lab 6.1
           in groups of twos (pg 149)
           Answer the 4 questions
Section 6.1


                     Compounds
A substance that is composed of two
or more different elements that are
chemically combined.
Properties of compounds are different
than those of their individual elements.
(NaCl)
Compounds can always be described
with an equation. (H20)
Section 6.1


         Bond #1: Covalent Bonds
When two elements share electrons in
their outer energy level.
Atoms are the happiest when their
outer energy level is full.
Water is an example
Section 6.1


               Bond #2: Ionic Bond
A bond between atoms that is formed by
losing and gaining an electron.
  NaCl is an example
  Na has one electron in its outer shell
  Cl has 7 in its outer shell
  The two oppositely charged atoms now
  attract each other like magnets.
Section 6.1


                  Chemical Reactions
Chemical reactions occur when bonds
between compounds are broken or
formed.
Chemical reactions must have the right
environment
  pH
  Temperature
  Energy
  Concentration
Section 6.1


             Chemical Equations
Reactant + reactant --> Product
Reactants undergo chemical reactions
Products are formed in chemical reactions
 2H2 + O2 --> 2H2O
Key Point: atoms are never created or destroyed
Section 6.1


                     Metabolism
All of the chemical reactions that
occur in the human body.
  Produce energy
  Require energy
  Build necessary molecules for
  bodily functions
Section 6.1


           Solutions and Mixtures
Solution: A mixture in which     Mixture: A combination of
one or more substances are       substances in which the
evenly distributed in another    individual components
substance.                       retain their chemical
                                 properties.Sand and Salt
    Salt Water
    Kool-Aid
Section 6.1


                       pH Levels
pH is a measure of how acidic or basic a substance is.
Scale of 0-14
pH paper is used to determine the pH level
  A pH below 7 is acidic
  A pH above 7 is basic
  A pH of 7 is neutral (Water)
Section 6.1


pH Levels
Section 6.1


                      Acid
Any substance that forms
hydrogen ions in water.
 H+
 When HCl is put into water
 H+ and Cl- ions.
Section 6.1


                      Base
Any substance that forms
hydroxide ions in water.
 OH-
 When NaOH is put in water
 you get Na+ and OH- ions.
Section 6.1


        Common Acids and Bases
Acids                  Bases
 Orange Juice          Toothpaste
 Stomach Acids         Baking Powder
 Tomato Juice          Chlorine Bleach
Section 6.1


            In Review...
What is an Element?
What are Atoms?
2 Types of Chemical Bonds
Chemical Reactions
Section 6.2


                Jump Start
What are some
characteristics of water?
How do organisms use
water to live and grow?
C 6: T C
     h    he hemistry of Life




6.2 - Water and Diffusion
Section 6.2


      Inside This Section...
The Importance of Water
The Characteristics of Water
Bond #3: Hydrogen Bonds
Diffusion
Section 6.2


       The Importance of Water
Most life processes occur only
in water
Helps to transport materials in
organism
70 to 95% of most organisms is
Water
Section 6.2


     The Characteristics of Water
Water is polar
Water sticks but isnā€™t sticky
  Capillary action: able to creep
  up thin tubes
Water resists temperature changes
Water expands when it freezes
Section 6.2


                  Water is Polar
Water (H2O) contains two hydrogen atoms and one Oxygen atom
that are covalently bonded to each other
The Shared electrons are more attracted to the Oxygen atom
than to the hydrogen atoms (Unequal sharing)
Results in a polar molecule: It has a positive and a negative end
Polar likes polar (i.e. Ionic compounds like salt and other polar
molecules like sugar)
Section 6.2


       Bond #3: Hydrogen Bonds
Because water molecules have a positive
end and a negative end, there will be an
attraction between water molecules
This results in Hydrogen Bonds between
the oxygen atom of one molecule and
the hydrogen atom of another
  Weaker Bond
Section 6.2


What Resists Temperature Change
It takes a lot of energy to increase
its temperature
Loses a lot of heat when it cools
These features help maintain a
steady environment (i.e. in cells)
Section 6.2


Water expands when it freezes

               Ice Floats - less dense
               What would happen to lake
               Michigan if ice was more dense
               than water?
Section 6.2


              Brownian Motion
Anything that is moving has kinetic
energy
If you look at the molecules of
gasses, liquids and some solid
molecules under a very powerful
microscope, you will see that they
are randomly moving --> Brownian
motion
Section 6.2


                     Diffusion
Diffusion: The net movement of particles from an area of
higher concentration to an area of lower concentration.
A very slow process --> Relies on random molecular motion
(Brownian motion)
Affected by 3 factors
  Concentration (most important factor)
  Temperature
  Pressure
Section 6.2


Diffusion
Section 6.2


                      Diffusion
Diffusion continues until the two substances are distributed
evenly --> Dynamic Equilibrium
Concentration gradient: the difference in concentration of a
substance across space.
At dynamic equilibrium, there is no concentration gradient
Section 6.2


             In Review...
The Importance of Water
The Characteristics of Water
Bond #3: Hydrogen Bonds
Diffusion
C 6: T C
  h    he hemistry of Life




6.3 - Life Substances
Section 6.3


         Inside This Section...
The Structure of Carbon
Carbohydrates
Lipids
Proteins
Nucleic Acids
Section 6.3


                      Carbon
Carbon has 4 electrons in its outer
energy level
Can form 4 covalent bonds with other                C
elements
Can also bond with other carbon
atoms
Section 6.3


                      Carbon
3 types of bonds:
 Single bond: each atom shares 1
 electron
                                                 C
 Double bond: each atom shares 2
 electrons
 Triple bond: each atom shares 3
 electrons
Section 6.3


    Carbon


C             C




     C C
Section 6.3


    Carbon


C             C




     C C
Section 6.3


                       Carbon
Carbon atoms can form straight
chains, branched chains, or rings and
can bind to other elements
                                                 C
Can form a whole bunch of carbon
structures
Section 6.3


               Simple Formulas
Water - H2O
Glucose - C6H12O6
Isomers: Same simple formula but
different 3D structure
Glucose and Galactose are both
C6H12O6
Section 6.3


               Molecular Chains
Large molecules are called macromolecules (e.g. proteins)
Macromolecules are formed by binding together smaller
molecules into chains (Polymer)
Section 6.3


     Condensation and Hydrolysis
Condensation: Chemical reaction by which polymers are
formed (water is removed)
Hydrolysis: Chemical reaction by which polymers are broken
apart (water is used)
Section 6.3


Carbohydrates
    Organic compound composed of
    Carbon, hydrogen and oxygen.
    2 Hā€™s and 1 O for every carbon
    Simplest type is monosaccharides like
    glucose and fructose.
Section 6.3


                 Carbohydrates
Two monosaccharides bind to form a
disaccharide (i.e. Sucrose = glucose +
fructose)
Many monosaccharides bind to form
polysaccharides (i.e. starch and
cellulose - glucose polymers)
Section 6.3




monosaccharide (glucose)

                                                disaccharide (sucrose)




                   polysaccharide (starch)
Section 6.3


                            Lipids
Lipids are fats and oils.
Organic compound with a large
proportion of C-H bonds and less
oxygen than carbohydrates.
Nonpolar
Used in cells for energy storage,
insulation and protection.
Section 6.3


                       Lipids
Most commonly 3 fatty acids bound to a glycerol molecule.
(pg 164)
Section 6.3


                        Proteins
Provide structure for tissues and organs
Carry out cell metabolism
Large, complex polymer made of Carbon,
hydrogen, oxygen, nitrogen and usually
sulfur.
Building blocks are various combinations
of amino acids
Amino acids join together with peptide
bond
Section 6.3


                     Proteins
An Enzyme is a protein that changes the rate of a chemical
reaction
 Involved in almost all metabolic processes.
 Speed up chemical reactions
Section 6.3


                  Nucleic Acids
Stores cellular information in the
form of a code.
Polymer of smaller subunits called
nucleotides.
Nucleotides consist of C, H, O, N, P
atoms.
Nucleotides make up our DNA
Section 6.3


                   Nucleic Acids
Nucleic acids have 3 parts:
                                                    Nitrogenous
  A Base                         Phospha                Base
                                   te
  A Simple sugar                       O     O

  A Phosphate group                         Sugar
Section 6.3


                    Nucleic Acids


                  Nitrogenous
Phospha               Base
  te
      O    O

          Sugar
Section 6.3


            In Review...
The Structure of Carbon
Carbohydrates
Lipids
Proteins
Nucleic Acids

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Chapter 6 Atoms & their interactions

  • 1. C 6: T C h he hemistry of Life 6.1 - Atoms and T heir Interactions
  • 2. Section 6.1 Inside This Section... What is an Element? What are Atoms? 2 Types of Chemical Bonds Chemical Reactions
  • 3. Section 6.1 What is an Element? A substance that can not be broken down into smaller particles. 90 elements naturally occur on earth 25 are essential to living things Each element is identified by a symbol
  • 4. Section 6.1 Elements C = Carbon Na = Sodium Ca = Calcium
  • 5. Section 6.1 Elements K = Potassium Fe = Iron N = Nitrogen
  • 7. Section 6.1 Trace Elements Elements that are present in small amounts in the human body. N,K,Ca, and Fe are a few examples Help control cell metabolism Plants obtain trace elements through their roots while animals obtain trace elements through what they eat.
  • 8. Section 6.1 What is an Atom? The smallest part of an element that still maintains all the characteristics of that element. The basic building blocks of all matter
  • 9. Section 6.1 What is an Atom? Nucleus: Center of the Atom Electrons: The outer particles Negatively charged Protons: Particles found in the nucleus Positively charged Neutrons: Particles found in the nucleus that have no charge.
  • 10. Section 6.1 What is an Atom? Electron and Proton numbers are always the same Neutron (0) Electron (-) Proton (+)
  • 11. Section 6.1 Energy Levels Regions around the nucleus that the electrons travel.Atoms like to have their outer most energy level full.
  • 12. Section 6.1 Energy Levels & Electrons Energy Level # of Electrons 1 2 2 8 3 18
  • 13. Section 6.1 What are Isotopes? Atoms of the same element that have different numbers of neutrons.
  • 14. Section 6.1 What are Isotopes? Most carbon nuclei contain six neutrons Some have 7 or 8 These three atoms are isotopes We refer to the isotopes in terms of the combined total of protons and neutrons Carbon-12 has 6 protons and 6 neutrons How many protons and neutrons does carbon-13 and carbon- 14 have??
  • 15. Section 6.1 Problem Solving Lab 6.1 Read Problem Solving Lab 6.1 in groups of twos (pg 149) Answer the 4 questions
  • 16. Section 6.1 Compounds A substance that is composed of two or more different elements that are chemically combined. Properties of compounds are different than those of their individual elements. (NaCl) Compounds can always be described with an equation. (H20)
  • 17. Section 6.1 Bond #1: Covalent Bonds When two elements share electrons in their outer energy level. Atoms are the happiest when their outer energy level is full. Water is an example
  • 18. Section 6.1 Bond #2: Ionic Bond A bond between atoms that is formed by losing and gaining an electron. NaCl is an example Na has one electron in its outer shell Cl has 7 in its outer shell The two oppositely charged atoms now attract each other like magnets.
  • 19. Section 6.1 Chemical Reactions Chemical reactions occur when bonds between compounds are broken or formed. Chemical reactions must have the right environment pH Temperature Energy Concentration
  • 20. Section 6.1 Chemical Equations Reactant + reactant --> Product Reactants undergo chemical reactions Products are formed in chemical reactions 2H2 + O2 --> 2H2O Key Point: atoms are never created or destroyed
  • 21. Section 6.1 Metabolism All of the chemical reactions that occur in the human body. Produce energy Require energy Build necessary molecules for bodily functions
  • 22. Section 6.1 Solutions and Mixtures Solution: A mixture in which Mixture: A combination of one or more substances are substances in which the evenly distributed in another individual components substance. retain their chemical properties.Sand and Salt Salt Water Kool-Aid
  • 23. Section 6.1 pH Levels pH is a measure of how acidic or basic a substance is. Scale of 0-14 pH paper is used to determine the pH level A pH below 7 is acidic A pH above 7 is basic A pH of 7 is neutral (Water)
  • 25. Section 6.1 Acid Any substance that forms hydrogen ions in water. H+ When HCl is put into water H+ and Cl- ions.
  • 26. Section 6.1 Base Any substance that forms hydroxide ions in water. OH- When NaOH is put in water you get Na+ and OH- ions.
  • 27. Section 6.1 Common Acids and Bases Acids Bases Orange Juice Toothpaste Stomach Acids Baking Powder Tomato Juice Chlorine Bleach
  • 28. Section 6.1 In Review... What is an Element? What are Atoms? 2 Types of Chemical Bonds Chemical Reactions
  • 29. Section 6.2 Jump Start What are some characteristics of water? How do organisms use water to live and grow?
  • 30. C 6: T C h he hemistry of Life 6.2 - Water and Diffusion
  • 31. Section 6.2 Inside This Section... The Importance of Water The Characteristics of Water Bond #3: Hydrogen Bonds Diffusion
  • 32. Section 6.2 The Importance of Water Most life processes occur only in water Helps to transport materials in organism 70 to 95% of most organisms is Water
  • 33. Section 6.2 The Characteristics of Water Water is polar Water sticks but isnā€™t sticky Capillary action: able to creep up thin tubes Water resists temperature changes Water expands when it freezes
  • 34. Section 6.2 Water is Polar Water (H2O) contains two hydrogen atoms and one Oxygen atom that are covalently bonded to each other The Shared electrons are more attracted to the Oxygen atom than to the hydrogen atoms (Unequal sharing) Results in a polar molecule: It has a positive and a negative end Polar likes polar (i.e. Ionic compounds like salt and other polar molecules like sugar)
  • 35. Section 6.2 Bond #3: Hydrogen Bonds Because water molecules have a positive end and a negative end, there will be an attraction between water molecules This results in Hydrogen Bonds between the oxygen atom of one molecule and the hydrogen atom of another Weaker Bond
  • 36. Section 6.2 What Resists Temperature Change It takes a lot of energy to increase its temperature Loses a lot of heat when it cools These features help maintain a steady environment (i.e. in cells)
  • 37. Section 6.2 Water expands when it freezes Ice Floats - less dense What would happen to lake Michigan if ice was more dense than water?
  • 38. Section 6.2 Brownian Motion Anything that is moving has kinetic energy If you look at the molecules of gasses, liquids and some solid molecules under a very powerful microscope, you will see that they are randomly moving --> Brownian motion
  • 39. Section 6.2 Diffusion Diffusion: The net movement of particles from an area of higher concentration to an area of lower concentration. A very slow process --> Relies on random molecular motion (Brownian motion) Affected by 3 factors Concentration (most important factor) Temperature Pressure
  • 41. Section 6.2 Diffusion Diffusion continues until the two substances are distributed evenly --> Dynamic Equilibrium Concentration gradient: the difference in concentration of a substance across space. At dynamic equilibrium, there is no concentration gradient
  • 42. Section 6.2 In Review... The Importance of Water The Characteristics of Water Bond #3: Hydrogen Bonds Diffusion
  • 43. C 6: T C h he hemistry of Life 6.3 - Life Substances
  • 44. Section 6.3 Inside This Section... The Structure of Carbon Carbohydrates Lipids Proteins Nucleic Acids
  • 45. Section 6.3 Carbon Carbon has 4 electrons in its outer energy level Can form 4 covalent bonds with other C elements Can also bond with other carbon atoms
  • 46. Section 6.3 Carbon 3 types of bonds: Single bond: each atom shares 1 electron C Double bond: each atom shares 2 electrons Triple bond: each atom shares 3 electrons
  • 47. Section 6.3 Carbon C C C C
  • 48. Section 6.3 Carbon C C C C
  • 49. Section 6.3 Carbon Carbon atoms can form straight chains, branched chains, or rings and can bind to other elements C Can form a whole bunch of carbon structures
  • 50. Section 6.3 Simple Formulas Water - H2O Glucose - C6H12O6 Isomers: Same simple formula but different 3D structure Glucose and Galactose are both C6H12O6
  • 51. Section 6.3 Molecular Chains Large molecules are called macromolecules (e.g. proteins) Macromolecules are formed by binding together smaller molecules into chains (Polymer)
  • 52. Section 6.3 Condensation and Hydrolysis Condensation: Chemical reaction by which polymers are formed (water is removed) Hydrolysis: Chemical reaction by which polymers are broken apart (water is used)
  • 53. Section 6.3 Carbohydrates Organic compound composed of Carbon, hydrogen and oxygen. 2 Hā€™s and 1 O for every carbon Simplest type is monosaccharides like glucose and fructose.
  • 54. Section 6.3 Carbohydrates Two monosaccharides bind to form a disaccharide (i.e. Sucrose = glucose + fructose) Many monosaccharides bind to form polysaccharides (i.e. starch and cellulose - glucose polymers)
  • 55. Section 6.3 monosaccharide (glucose) disaccharide (sucrose) polysaccharide (starch)
  • 56. Section 6.3 Lipids Lipids are fats and oils. Organic compound with a large proportion of C-H bonds and less oxygen than carbohydrates. Nonpolar Used in cells for energy storage, insulation and protection.
  • 57. Section 6.3 Lipids Most commonly 3 fatty acids bound to a glycerol molecule. (pg 164)
  • 58. Section 6.3 Proteins Provide structure for tissues and organs Carry out cell metabolism Large, complex polymer made of Carbon, hydrogen, oxygen, nitrogen and usually sulfur. Building blocks are various combinations of amino acids Amino acids join together with peptide bond
  • 59. Section 6.3 Proteins An Enzyme is a protein that changes the rate of a chemical reaction Involved in almost all metabolic processes. Speed up chemical reactions
  • 60. Section 6.3 Nucleic Acids Stores cellular information in the form of a code. Polymer of smaller subunits called nucleotides. Nucleotides consist of C, H, O, N, P atoms. Nucleotides make up our DNA
  • 61. Section 6.3 Nucleic Acids Nucleic acids have 3 parts: Nitrogenous A Base Phospha Base te A Simple sugar O O A Phosphate group Sugar
  • 62. Section 6.3 Nucleic Acids Nitrogenous Phospha Base te O O Sugar
  • 63. Section 6.3 In Review... The Structure of Carbon Carbohydrates Lipids Proteins Nucleic Acids