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Have We Got the Names “Right”?
Why, Geekery & Logistics
David P. Shorthouse
Cryptantha celosioides (Eastwood) Payson
cock’s-comb cryptantha
©2011 Ryan Batten
Cryptantha nubigena var. celosioides (Eastwood) B. Boivin
Hemihomonyms
« If two different species, genera or other taxons have the same
name, this name is a homonym. Homonyms are illegal if they
belong to the same code of nomenclature. If same name belongs
to different codes, it is a hemihomonym (Starobogatov, 1991). »
Pieris spp.
Pieris japonica
Pieris rapae
Darwin Core Terms
taxonID | scientificNameID | acceptedNameUsageID | parentNameUsageID |
originalNameUsageID | nameAccordingToID | namePublishedInID | taxonConceptID |
scientificName | acceptedNameUsage | parentNameUsage | originalNameUsage |
nameAccordingTo | namePublishedIn | namePublishedInYear | higherClassification |
kingdom | phylum | class | order | family | genus | subgenus | specificEpithet |
infraspecificEpithet | taxonRank | verbatimTaxonRank | scientificNameAuthorship |
vernacularName | nomenclaturalCode | taxonomicStatus | nomenclaturalStatus |
taxonRemarks
Identity, Nomenclature, Taxonomy, Taxon Concepts
Identification
scientificName
« The full scientific name, with authorship and date information if
known. When forming part of an Identification, this should be the
name in lowest level taxonomic rank that can be determined. This
term should not contain identification qualifications, which should
instead be supplied in the identificationQualifier term. »
Coleoptera
Ctenomys sociabilis
Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell
identifiedBy
« A list (concatenated and separated) of names of people, groups,
or organizations who assigned the Taxon to the subject. »
scientificNameID
« An identifier for the nomenclatural (not taxonomic) details of a
scientific name. »
urn:lsid:ipni.org:names:37829-1:1.3
identificationQualifier
« A brief phrase or a standard term ("cf.", "aff.") to express the
determiner's doubts about the Identification. »
1. For the determination Quercus aff. agrifolia var. oxyadenia,
identificationQualifier would be "aff. agrifolia var. oxyadenia" with
accompanying values "Quercus" in genus, "agrifolia" in specificEpithet,
"oxyadenia" in infraspecificEpithet, and "var." in rank.
1. For the determination Quercus agrifolia cf. var. oxyadenia, identificationQualifier
would be "cf. var. oxyadenia " with accompanying values "Quercus" in genus,
"agrifolia" in specificEpithet, "oxyadenia" in infraspecificEpithet, and "var." in
rank.
genus
subgenus
specificEpithet
subspecificEpithet
scientificNameAuthorship
Nomenclature
« The status related to the original publication of the name and its
conformance to the relevant rules of nomenclature. It is based
essentially on an algorithm according to the business rules of the
code. It requires no taxonomic opinion.»
nomenclaturalStatus
nom. ambig., nom. illeg., nom. subnud.
nomenclaturalCode
« A reference for the publication in which the scientificName was
originally established under the rules of the associated
nomenclaturalCode. »
namePublishedIn
namePublishedInID
namePublishedInYear
originalNameUsage
« The taxon name, with authorship and date information if known,
as it originally appeared when first established under the rules of
the associated nomenclaturalCode. The basionym (botany) or
basonym (bacteriology) of the scientificName or the senior/earlier
homonym for replaced names. »
Taxonomy
acceptedNameUsage
« The full name, with authorship and date information if known, of
the currently valid (zoological) or accepted (botanical) taxon. »
Classification
higherClassification
kingdom
phylum
class
order
family
parentNameUsage
parentNameUsageID
taxonomicStatus
Taxon Concepts
nameAccordingTo
nameAccordingToID
taxonConceptID
class
order
family
Darwin Core Extensions
Darwin Core Identification History
identificationID | identifiedBy | dateIdentified | identificationReferences |
identificationRemarks | identificationQualifier | identificationVerificationStatus |
typeStatus | taxonID | taxonConceptID | scientificName | scientificNameID |
namePublishedIn | namePublishedInYear | namePublishedInID | nameAccordingTo |
nameAccordingToID | acceptedNameUsage | parentNameUsage | originalNameUsage |
higherClassification | kingdom | phylum | class | order | family | genus | subgenus |
specificEpithet | infraspecificEpithet | taxonRank | verbatimTaxonRank |
scientificNameAuthorship | vernacularName | nomenclaturalCode | taxonomicStatus |
nomenclaturalStatus | taxonRemarks
Where Is there More Help?
TDWG Listserv
Taxacom Listserv
Canadensys Google Group
So Where/How Do We Start?
http://iphylo.blogspot.ca/2012/02/using-google-refine-and-taxonomic.html
http://www.canadensys.net/refine/
Let’s Get Organized…

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Have We Got the Names "Right"?

  • 1. Have We Got the Names “Right”? Why, Geekery & Logistics David P. Shorthouse
  • 2.
  • 3.
  • 4. Cryptantha celosioides (Eastwood) Payson cock’s-comb cryptantha ©2011 Ryan Batten
  • 5. Cryptantha nubigena var. celosioides (Eastwood) B. Boivin
  • 6. Hemihomonyms « If two different species, genera or other taxons have the same name, this name is a homonym. Homonyms are illegal if they belong to the same code of nomenclature. If same name belongs to different codes, it is a hemihomonym (Starobogatov, 1991). »
  • 8.
  • 9. Darwin Core Terms taxonID | scientificNameID | acceptedNameUsageID | parentNameUsageID | originalNameUsageID | nameAccordingToID | namePublishedInID | taxonConceptID | scientificName | acceptedNameUsage | parentNameUsage | originalNameUsage | nameAccordingTo | namePublishedIn | namePublishedInYear | higherClassification | kingdom | phylum | class | order | family | genus | subgenus | specificEpithet | infraspecificEpithet | taxonRank | verbatimTaxonRank | scientificNameAuthorship | vernacularName | nomenclaturalCode | taxonomicStatus | nomenclaturalStatus | taxonRemarks Identity, Nomenclature, Taxonomy, Taxon Concepts
  • 11. scientificName « The full scientific name, with authorship and date information if known. When forming part of an Identification, this should be the name in lowest level taxonomic rank that can be determined. This term should not contain identification qualifications, which should instead be supplied in the identificationQualifier term. » Coleoptera Ctenomys sociabilis Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell
  • 12. identifiedBy « A list (concatenated and separated) of names of people, groups, or organizations who assigned the Taxon to the subject. »
  • 13. scientificNameID « An identifier for the nomenclatural (not taxonomic) details of a scientific name. » urn:lsid:ipni.org:names:37829-1:1.3
  • 14. identificationQualifier « A brief phrase or a standard term ("cf.", "aff.") to express the determiner's doubts about the Identification. » 1. For the determination Quercus aff. agrifolia var. oxyadenia, identificationQualifier would be "aff. agrifolia var. oxyadenia" with accompanying values "Quercus" in genus, "agrifolia" in specificEpithet, "oxyadenia" in infraspecificEpithet, and "var." in rank. 1. For the determination Quercus agrifolia cf. var. oxyadenia, identificationQualifier would be "cf. var. oxyadenia " with accompanying values "Quercus" in genus, "agrifolia" in specificEpithet, "oxyadenia" in infraspecificEpithet, and "var." in rank.
  • 17. « The status related to the original publication of the name and its conformance to the relevant rules of nomenclature. It is based essentially on an algorithm according to the business rules of the code. It requires no taxonomic opinion.» nomenclaturalStatus nom. ambig., nom. illeg., nom. subnud. nomenclaturalCode
  • 18. « A reference for the publication in which the scientificName was originally established under the rules of the associated nomenclaturalCode. » namePublishedIn namePublishedInID namePublishedInYear
  • 19. originalNameUsage « The taxon name, with authorship and date information if known, as it originally appeared when first established under the rules of the associated nomenclaturalCode. The basionym (botany) or basonym (bacteriology) of the scientificName or the senior/earlier homonym for replaced names. »
  • 21. acceptedNameUsage « The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) taxon. »
  • 24.
  • 25. Darwin Core Extensions Darwin Core Identification History identificationID | identifiedBy | dateIdentified | identificationReferences | identificationRemarks | identificationQualifier | identificationVerificationStatus | typeStatus | taxonID | taxonConceptID | scientificName | scientificNameID | namePublishedIn | namePublishedInYear | namePublishedInID | nameAccordingTo | nameAccordingToID | acceptedNameUsage | parentNameUsage | originalNameUsage | higherClassification | kingdom | phylum | class | order | family | genus | subgenus | specificEpithet | infraspecificEpithet | taxonRank | verbatimTaxonRank | scientificNameAuthorship | vernacularName | nomenclaturalCode | taxonomicStatus | nomenclaturalStatus | taxonRemarks
  • 26. Where Is there More Help? TDWG Listserv Taxacom Listserv Canadensys Google Group
  • 27. So Where/How Do We Start?

Editor's Notes

  1. aff = shares some affinity but is not that cf. = confer (read aloud as compare), similar to but not certainly identified as