26. More Gradute-advisor conversion Can you give me an example of your knowledge about biological existences ?I assume it is a ontology – the study of existence Let’s Start with GO
28. GO - Gene Ontology Cellular Component Molecular Function Biological Process is NOT an ontology only about Gene This is a typical ontological misunderstanding
34. Anatomy of a GO term id: GO:0006094 name: gluconeogenesis namespace: process def: The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [http://cancerweb.ncl.ac.uk/omd/index.html] exact_synonym: glucose biosynthesis xref_analog: MetaCyc:GLUCONEO-PWY is_a: GO:0006006 is_a: GO:0006092 unique GO ID term name definition synonym database ref parentage ontology
44. More Gradute-advisor conversion Ontologies are really funny. Could you tell me how useful they are other than helping you to design efficient biological cells? Basically, ontologies help us a lot in design the Matrix. To represent the real world, we need a formalism to do Knowledge Representation.
45. Semantic Web The first prototype of Matrix is based on so called “Semantic Web”
51. Evolution of Web Ontology Languages XML HTML RDFS SHOE OIL DAML-ONT OWL RDF Revision Extend vocabularies Combine vocabularies Extend HTML tags for semantic description Define vocabularies OWL-S SGML DAML-S For Web services 1992 1998 1999 2000 2001 2002 2003 DAML (DAML+OIL)