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BCH 400/600 –
Introductory Biochemistry
Instructor: David Shintani
Office: 311C Fleischmann Ag.
Lab: 308 Fleischmann Ag.
E-mail: shintani@unr.edu
Phone: (775) 784-4631
What is Biochemistry?
• Biochemistry = chemistry of life.
• Biochemists use physical and
chemical principles to explain
biology at the molecular level.
• Basic principles of biochemistry are
common to all living organism
How does biochemistry
impact you?
• Medicine
• Agriculture
• Industrial applications
• Environmental applications
Principle Areas of
Biochemistry
• Structure and function of biological
macromolecules
• Metabolism – anabolic and catabolic
processes.
• Molecular Genetics – How life is
replicated. Regulation of protein
synthesis
Life Before Biochemistry
Once upon a time, a long long time ago…..
Vitalism: idea that substances and processes
associated with living organisms did not
behave according to the known laws of
physics and chemistry
Evidence:
1) Only living things have a high degree of
complexity
2) Only living things extract, transform and
utilize energy from their environment
3) Only living things are capable of self
assembly and self replication
Origins of Biochemistry:
A challenge to “Vitalism.”
Famous Dead Biochemist!
Fallacy #1: Biochemicals can only be
produced by living organisms
•1828 Friedrich Wohler
•Dead Biochemist #1
Fallacy #2: Complex bioconversion of
chemical substances require living
matter
•1897 Eduard Buchner
Dead Biochemists #2
Glucose + Dead Yeast = Alcohol
• Emil Fischer
Fallacy #2: Complex
bioconversion of chemical
substances require living matter
Dead Biochemists #3
Fallacy #2: Complex
bioconversion of chemical
substances require living matter
Dead Biochemists #4
1926 J.B. Sumner
Findings of other famous dead biochemist
• 1944 Avery, MacLeod and McCarty identified
DNA as information molecules
• 1953 Watson (still alive) and Crick proposed the
structure of DNA
• 1958 Crick proposed the central dogma of
biology
Organization of Life
• elements
• simple organic compounds (monomers)
• macromolecules (polymers)
• supramolecular structures
• organelles
• cells
• tissues
• organisms
Range of the
sizes of objects
studies by
Biochemist and
Biologist
1 angstrom = 0.1 nm
Most abundant, essential for all organisms: C, N, O, P, S, H
Less abundant, essential for all organisms : Na, Mg, K, Ca, Cl
Trace levels, essential for all organism: Mn, Fe, Co, Cu, Zn
Trace levels, essential for some organisms: V, Cr, Mo, B, Al, Ga, Sn, Si,
As, Se, I,
Elements of Life
Important compounds, functional groups
Many Important Biomolecules are Polymers
p r o t e i n c o m p le x
p r o t e in s u b u n it
a m i n o a c id
m e m b r a n e
p h o s p h o lip id
f a t t y a c id
c e ll w a ll
c e llu lo se
g lu co se
c h r o m o s o m e
D N A
n u c le o tid emonomer
polymer
supramolecular
structure
lipids proteins carbo nucleic acids
Lipids
m e m b r a n e
p h o s p h o lip id
f a t t y a c idmonomer
polymer
supramolecular
structure
Proteins
monomer
polymer
supramolecular
structure Enzyme complex
protein subunit
amino acid
Carbohydrates
c e ll w a ll
c e llu lo se
g lu co semonomer
polymer
supramolecular
structure
c h r o m a t in
D N A
n u c le o ti d emonomer
polymer
supramolecular
structure
Nucleic Acids
 
Common theme:
Monomers form
polymers through
condensations
Polymers are broken
down through
hydrolysis.
Prokaryote Cell
Cellular Organization
of an E. coli Cell
200 – 300 mg protein / mL cytoplasm
Eukaryote Cell
Chapter 1 - Introduction to Biochemistry (slideshare)
Chapter 1 - Introduction to Biochemistry (slideshare)
Chapter 1 - Introduction to Biochemistry (slideshare)
Chapter 1 - Introduction to Biochemistry (slideshare)

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Chapter 1 - Introduction to Biochemistry (slideshare)

  • 1. BCH 400/600 – Introductory Biochemistry Instructor: David Shintani Office: 311C Fleischmann Ag. Lab: 308 Fleischmann Ag. E-mail: shintani@unr.edu Phone: (775) 784-4631
  • 2. What is Biochemistry? • Biochemistry = chemistry of life. • Biochemists use physical and chemical principles to explain biology at the molecular level. • Basic principles of biochemistry are common to all living organism
  • 3. How does biochemistry impact you? • Medicine • Agriculture • Industrial applications • Environmental applications
  • 4. Principle Areas of Biochemistry • Structure and function of biological macromolecules • Metabolism – anabolic and catabolic processes. • Molecular Genetics – How life is replicated. Regulation of protein synthesis
  • 6. Once upon a time, a long long time ago….. Vitalism: idea that substances and processes associated with living organisms did not behave according to the known laws of physics and chemistry Evidence: 1) Only living things have a high degree of complexity 2) Only living things extract, transform and utilize energy from their environment 3) Only living things are capable of self assembly and self replication
  • 7. Origins of Biochemistry: A challenge to “Vitalism.” Famous Dead Biochemist!
  • 8. Fallacy #1: Biochemicals can only be produced by living organisms •1828 Friedrich Wohler •Dead Biochemist #1
  • 9. Fallacy #2: Complex bioconversion of chemical substances require living matter •1897 Eduard Buchner Dead Biochemists #2 Glucose + Dead Yeast = Alcohol
  • 10. • Emil Fischer Fallacy #2: Complex bioconversion of chemical substances require living matter Dead Biochemists #3
  • 11. Fallacy #2: Complex bioconversion of chemical substances require living matter Dead Biochemists #4 1926 J.B. Sumner
  • 12. Findings of other famous dead biochemist • 1944 Avery, MacLeod and McCarty identified DNA as information molecules • 1953 Watson (still alive) and Crick proposed the structure of DNA • 1958 Crick proposed the central dogma of biology
  • 13. Organization of Life • elements • simple organic compounds (monomers) • macromolecules (polymers) • supramolecular structures • organelles • cells • tissues • organisms
  • 14. Range of the sizes of objects studies by Biochemist and Biologist 1 angstrom = 0.1 nm
  • 15. Most abundant, essential for all organisms: C, N, O, P, S, H Less abundant, essential for all organisms : Na, Mg, K, Ca, Cl Trace levels, essential for all organism: Mn, Fe, Co, Cu, Zn Trace levels, essential for some organisms: V, Cr, Mo, B, Al, Ga, Sn, Si, As, Se, I, Elements of Life
  • 17. Many Important Biomolecules are Polymers p r o t e i n c o m p le x p r o t e in s u b u n it a m i n o a c id m e m b r a n e p h o s p h o lip id f a t t y a c id c e ll w a ll c e llu lo se g lu co se c h r o m o s o m e D N A n u c le o tid emonomer polymer supramolecular structure lipids proteins carbo nucleic acids
  • 18. Lipids m e m b r a n e p h o s p h o lip id f a t t y a c idmonomer polymer supramolecular structure
  • 20. Carbohydrates c e ll w a ll c e llu lo se g lu co semonomer polymer supramolecular structure
  • 21. c h r o m a t in D N A n u c le o ti d emonomer polymer supramolecular structure Nucleic Acids
  • 22.   Common theme: Monomers form polymers through condensations Polymers are broken down through hydrolysis.
  • 23.
  • 25. Cellular Organization of an E. coli Cell 200 – 300 mg protein / mL cytoplasm

Editor's Notes

  1. Nuclear envelope and endoplasmic reticulum of a eukaryotic cell.
  2. Golgi apparatus. Often associated with the endoplasmic reticulum, the Golgi apparatus is responsible for the modification and sorting of some biomolecules. The proteins inserted into the lumen of the ER are transported to the Golgi apparatus for sorting and secretion. Vesicles carry modified material to destinations inside and outside the cell.
  3. Mitochondrion. Mitochondria are the main sites of energy transduction in aerobic eukaryotic cells. Carbohydrates, fatty acids, and amino acids are metabolized in this organelle.
  4. Chloroplast. Chloroplasts are the sites of photosynthesis in plants and algae. Light energy is captured by pigments associated with the thylakoid membrane and used to convert carbon dioxide and water to carbohydrates.