My presentation at BioHackathon 2010, http://hackathon3.dbcls.jp/, an event devoted to semantic web for life science

1. Alberto Labarga
Computer Science Department
University of Granada
Spain
Projects
Bionotate, Qfactor, EGC
alberto.labarga@scientifik.info
http://www.scientifik.info
http://twitter.com/scientifikinfo
http://www.linkedin.com/in/albertolabarga

2. Research interests
• Bioinformatics
– Gene expression analysis (microarrays, RT-PCR, MPS)
• Text mining
– Automatic names and relations extraction
– Collaborative annotation and tagging
• Semantic web
– LinkedData
• Data integration
– Web services

3. @Biohackathon2010
• Bionotate (http://bionotate.sourceforge.net)
– Science Commons text annotation service
– Integration with BioRDF
– Publish results as LinkedData
• Beyond Elsevier Grand Challenge
– Integrate Reflect, Coraal, Whatizit
– Semantic navigation of the literature ecosystem
(authors, citations, topics, etc)

4. How can we use technology to make us
smarter, individually and collectively?
Enable Collective Intelligence
Bring Intelligence to the Interface
Serendipitous Finding Integrated search
Search/Discover Continual queries
Collaborative Searching Paper recommendation
Structural Search Alert
Gather Collecting Project and Personal
Manage Internal search
Refereed and Grey literature
Organizing
Create Annotating Tag, annotate, rate
Review & Rate Multi-author authoring
Describe
Write
Share Publish Linked Data
Interfaces
Sharing

5. XSLT+DHTML +CSS