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Bioenergy


                                                                                                       06 MAR 2012


                                                                                 Dr. Patrick O. Bradshaw
                                                                                       Program Manager
                                                                                             AFOSR/RSL
        Integrity  Service  Excellence                                  Air Force Research Laboratory


2 March 2012                 DISTRIBUTION A: Approved for public release; distribution is unlimited.                 1
2012 AFOSR Spring Review
                   Portfolio Overview
NAME: Patrick O. Bradshaw, Ph.D.
BRIEF DESCRIPTION OF PORTFOLIO:

• Bioenergy is a program that characterizes, models and explains the structural
features, metabolic functions and gene regulatory mechanisms utilized by various
biological systems to capture, transfer, convert, or store energy for the purpose of
producing renewable biofuels and improving the power output of biofuel cells.
(~80% of portfolio)
         Sub-Areas: (1) BioSolar Hydrogen, (2) Algal Oil (3) Artificial
         Photosynthesis, and (4) Biofuel Cells (Microbial and Enzymatic)

• Photo-Electro-Magnetic Stimulation of Biological Responses is a beginning
program that characterizes, models and explains the stimulatory and inhibitory
responses of biological systems to low-level exposures of photo-electro-magnetic
stimuli. Potential long-term benefits may include accelerated recovery from mental
fatigue and drowsiness, enhanced learning and training, and noninvasive treatment
of traumatic brain injuries. (~20% of portfolio)
                           DISTRIBUTION A: Approved for public release; distribution is unlimited.   2
Visionary Transformational
                    AF Capabilities
Bioenergy:
• Biofuel Produced from CO2, H2O and Sunlight:
        - Algal systems biology data used to bioengineer lipid biosynthetic pathways in
         microbes or to create novel synthetic pathways in artificial solar fuel systems

• Portable H2 Fuel Generated from H2O or Cellulose:
        - Cheap, self-healing inorganic catalysts split water into H2 and O2
        - Engineered photosynthetic microbes produce H2 fuel

• Compact Power from Ambient Biomass:
        - Efficient electron transport coupled with unique electrode architectures
          enhance power and energy densities of biofuel cells

Photo-electro-magnetic Stimulation of Bio-Responses:
• Electromagnetically Enhanced Cognition, Protection and Healing:
        - low-level exposure with photo-electro-magnetic stimuli enhance cognitive
         functions, bio-molecular repair and bio-resiliency


                           DISTRIBUTION A: Approved for public release; distribution is unlimited.   3
Overview of Topic Areas 3003P
  Bioenergy: Alternative Energy
• Biofuels—Macro-scale Energy                                              • Biofuel Cells—Micro-scale
                                                                                   Energy
       • Biosolar Hydrogen
       • Algal Oil for Jet Fuel                                                      • Enzymatic Fuel Cells
       • Synthetic Biology                                                           • Microbial Fuel Cells
                                                                                     • Artificial Photosynthesis

                                                             H2                                            Small Vehicles,
 Sun     Photosynthesis                   Fuel                               Fuel Cells                    portable power




                                                                                                                             Robofly
         Natural to Artificial
                                                                             Biofuel Cells                   MAV


                  Future Direction
               • Photo-Electro-Magnetic Stimulation of Biosystems
               • Biomarkers, Physiological responses and toxicology
               • Synthetic Biology – explore non coding genetic information


                                 DISTRIBUTION A: Approved for public release; distribution is unlimited.                               4
Bioenergy:
               A Progressive Research Strategy
                   Natural to Artificial
       Sun         Photosynthesis                           Fuel                   Biofuel Cells                POWER


Generation         1st                                 2nd                                       3rd                      4th


                 Natural                 Optimized Natural                                    Hybrid                  Artificial
System         Biosystems
 Type                                       Biosystems                                        Systems                 Systems




 Basic         Characterization                    Metabolic/                               Synthetic               Chemistry &
Research        Mechanisms                          Protein                                  Biology                 Materials
  Type             Models                         Engineering                                                        Science


Disciplinary
                                  Biology
                                                                                                          Chemistry
  Inputs                    Math                                    Physics                                 Engineering


                                DISTRIBUTION A: Approved for public release; distribution is unlimited.                            5
Challenges, Opportunities
                and Breakthrough Examples
Natural Systems Research:
Challenge: Explain gene regulatory mechanisms of metabolic pathways and networks
  Payoffs: - potentially economical viable biofuels
           - enhanced energy density of microbial fuel cells (MFC)

Challenge: Understand mechanisms and kinetics of enzyme-catalyzed reactions
  Payoffs: - enhanced energy density of enzymatic fuel cells (EFC)
           - sustained oxygen-tolerant hydrogen production by photosynthetic microbes

Artificial Systems Research:
Challenge: Discover/fabricate cheap, durable synthetic materials that mimic the
           enzymatic or structural functions in natural energy systems
  Payoffs: - cheap water-splitting catalysts as platinum replacements in H2-generating devices
           - enhanced power and energy densities for EFC
Challenge: Integrate and assemble nano-scale inorganic/organic/bio-materials
  Payoffs: - ordered enzyme alignments for enhanced power densities in EFC
           - enhanced electron transport and power density in biofuel cells
           - light is harvested and split in artificial photosynthetic solar fuel generator
                                DISTRIBUTION A: Approved for public release; distribution is unlimited.   6
Photosynthesis, Systems Biology and Metabolic Engineering
                           for the Production of Biofuels


         Microalgae & Cyanobacteria Make Hydrogen, Lipids & Sugars
     Light Reactions PSI and PSII                                               Dark Reactions
                                                                                   Triglyceride (Oil)
 light      chlorophyll                                                             Lipid Synthesis                                                                                Jet Fuel
                                              _
                                       4e                      CO2
                                                                                    Sugar/Cellulose
                                       4 H+                                          Synthesis                                                                                     Ethanol
            water-splitting
2 H2O
              enzyme
                                                                                 H2-generating
                                     carbon-fixing                               hydrogenase                                                                                         H2
                                        enzyme
 Three Key Biocatalysts                                                             enzyme


 Overview of Research Strategy
                                                                                  AFOSR & DOE (NREL)
                                                                                      Collaboration
            mutants

                                                                                        HoxE       HoxF                     ORF?      HoxU     HoxY        HoxH
                                                                                                             Nco I (3375)                                         Nco I (6934)
                                                                                         Bam HI (1484)
                                                                                                             Cla I (2981)               Eco RI (4977)
                                                                                        Nco I (1099)                                                                Cla I (7047)


                          screening            genome                         genes
                                                                                                  diaphorase moiety                                     Ni-Fe hydrogenase moiety
                                                                                                  genom sequence around hox genes in S. platensis
                                                                                                       ic
             field                                                                                                          7098 bp




                              DISTRIBUTION A: Approved for public release; distribution is unlimited.                                                                                         7
2012 AFOSR Spring Review:
     Bioenergy (3003P)




  Biosolar Hydrogen
  (MURI and Core Funding)




     DISTRIBUTION A: Approved for public release; distribution is unlimited.   8
Bio-Solar Hydrogen Production
                                     Eight Labs Including AFRL & DOE

Objective:        Light + 2 H2O  O2 + 2 H2 (H+/e-)                     Technical Approaches:
• Obtain knowledge of the                                                 • Bio-prospecting new strains & species
 basic scientific principles         H2 Detectors
 governing H2 production in                                               • New H2 detection & analytical methods
 microalgae and
 cyanobacteria                   H2 Rate       H2 Yield
                                                                          • Stress responses and H2 production
• Genetically engineer                                                    • Systems biology and pathway analyses
                               • Electrode consumes H2
 pathways to improve the       • Extended spectral range
 H2 producing capacity of      • Increased light source                   • Genetic engineering of pathways
 these phototrophs               intensity 500X with LED



Accomplishments:                                                            DoD Benefit:
•Developed techniques for high throughput                                                  Sun                 1.   Stable fuel supply & price
screening of H2-producing phototrophs
                                                                                                               2.   Energy independence
•Identified physiological factors for increasing                                     Photosynthesis            3.   Carbon neutral
rates & yields of cellular H2 production                                                                       4.   Anti-climate change
•Engineered metabolic pathways with                                                        Fuel
increased production of H2
                                                                                         POWER




                                     DISTRIBUTION A: Approved for public release; distribution is unlimited.                                     9
BioSolar H2 Cyanobacterial Metabolism
                       Improving Cellular Fuel Production Efficiency
                                            Dismukes (Rutgers)

         direct                                           H+ + e-
       photo-H2                                 Indirect (dark)    H+
                                                                        H+   H+
                 H2O       O2                                       ∆Ψ
                                                                   H+
                                                                                   H+
                                                        auto-       H+       H+   H+
                 photosynthesis
                                  storage           fermentation    e-
                                                                          e- e-
                                                                                -
                                                                           e- ee-
                                                                                         hydrogenase   H2
                                                                   NADH
                                  compounds
                                                                                  e- -
                                                                        e- e- e- e- e




                                        Targets for Protein Engineering
 Channeling reductant       Revealed NO3- master          Identified the metabolic           NADH is reductant for
flux through one of two        switch between             bottleneck in glycogen             phase II H2 and NAD+ is
     NADH enzymes            glycolysis (GLY) &           fermentation                       feedback inhibitor of
   increases photo-H2        oxidative pentose                                               hydrogenase
                              phosphate (OPP)
     + Flavone
                            Reductant & “Thauer Limit”



      Control
                                  GLY
                                              OPP          at GAPDH                                             10
                                - NO3        + NO3
“Milking” More H2 by Co-Fermentation
                      PI: G. C. Dismukes Spring Review FY12
                                                                                                 Separate Growth


                                                                                                      3 weeks      3 days


                                                                                  Cyanothece sp. + Synechococcus sp.
                                                                                 “photo” fermenter  “dark” fermenter


                                                                                                 Co-Fermentation




*Rate of Dark+Photo H2 ↑ from Cyanothece
is limited by intracellular reductant glycogen
*Syn. WT excretes reductant as lactate
which stimulates 2x H2 from mixed cultures
with Cyanothece
*SynLdhAEx Over-expression strain
excretes more lactate than Syn WT and
stimulates H2 even more by 2.5x
                            DISTRIBUTION A: Approved for public release; distribution is unlimited.                         11
2012 AFOSR Spring Review:
     Bioenergy (2308C)




             Algal Oil




     DISTRIBUTION A: Approved for public release; distribution is unlimited.   12
Algal Oil
                                       Ten Labs Including DOE and USAFA

 Objective: Gain knowledge of basic algal                                        Technical Approach:
 biology needed to engineer and enhance                                          • Partner with DOE’s National Renewable Energy Lab
 photosynthetic and lipid biosynthetic pathways
                                                                                 • Bioprospect for new lipid-producing algal strains
                    AFOSR        DOE                                             • Optimize light capture and photosynthetic efficiency
                                                                                 • Optimize environmental factors for lipid biosynthesis
                                                                                 • Use systems biology (“omics”) to map lipid pathways
                                           Industry
                                                                                 • Identify genetic targets and model metabolism
                                                                                 • Build genetic tools for enabling algal bioengineering

Accomplishments:                                                                   AF Benefit:
• Screened1200 algal strains for oil yield and identified
50 candidate strains for future studies                                                        Sun              1.   Stable fuel supply & price
                                                                                                                2.   Oil independence
• High pH raises oil yields further in NO3-stressed cells                                                       3.   Carbon-neutral
                                                                                          Photosynthesis
•Transformed carbonic anhydrase into algal genome,                                                              4.   Anti-climate change
resulting in CO2 availability and enhanced growth rate
                                                                                               Fuel
• Cell cycle arrest or silica starvation elevates lipid
production in brown algae (diatoms)                                                          POWER

• Identified proteins involved in forming intracellular lipid
droplets and in controlling their storage capacity
                                      DISTRIBUTION A: Approved for public release; distribution is unlimited.                                 13
Systems Biology for Algal Lipid Pathway
                 Analyses: A 7 Lab Collaboration
Objectives: Next generation RNA Sequencing technologies are used to compare gene
expression profiles in lipid- and non-lipid-producing algae



                                                                                X X
A       Transcriptomics                   Proteomics
                                                                                         T1
                                                                                                        Metabolomics
                                                                                           T1
P                                                                                               A1A
                                                                                                        Benning (MSU)
                                                                                  A1A1            A1A   Hildebrand (UCSD)
P                                                    Seibert (NREL)                   B1B1         B1A                ∆Mi
                                                                                                     B1A
R           Merchant (UCLA)                          Sayre (Danforth)
                                                                                                     S1 S     P1 P
                                                                                                         1        1
O
A       Bioinformatics:                   Computational Biology:
        Data collection &                 Mathematical modeling &
C         processing                         pathway mapping
H        Pellegrini (UCLA)                    Rabinowitz (Princeton)



Recent Findings:
• 3 time-course experiments analyzed by RNA-Sequencing: from 0 to 48 h
• DGAT1, triglyceride synthesis enzyme, is induced early in the time course
• A transcription factor, NRTF1, is co-expressed with DGAT1
• Developed a web-based protein function annotation tool for algal genomes
           (http://pathways.mcdb.ucla.edu/chlamy/) release; distribution is unlimited.
                                DISTRIBUTION A: Approved for public                                                     14
Enhanced Photosynthetic Efficiency & Algal Growth
                    by Optimizing Light Harvesting Antennae Size
                                      Richard Sayre (Danforth Plant Science Center)
                                                                                                              1.4
Transgenic algae with                    FACT:                                                                          Growth in low light
reduced Chl b have:                      At full sunlight 75% of the captured                                 1.2           (50 µmol
1) Reduced antennae                      energy is given off as fluorescence                                             photons m-2s-1 )
                                                                                                              1.0




                                                                                   Culture Density (OD 750)
    size                                 or heat.
2) Reduced steady state                                                                                       0.8
    fluorescence                         HYPOTHESIS:
                                         Reducing the antennae size                                           0.6
                   No       Chl
      WT           Chl    Deficient
                                         optimizes energy transfer between
                                         the antennae and reactions centers                                   0.4
Chl
a/b   2.2           ∞     4.0   4.9
                                         RESULT:                                                              0.2

                                         Reductions in Chl b levels reduced                                   0.0
                                         the antennae size resulting in a 30%                                       1         2      3    4       5   6      7
                                         increase in biomass yield at high                                          Growth in high light
                                         light intensities relative to wild type                              1.0
                                                                                                                        (500 µmol
                                                                                                                                                            +30%
                                                                                                                      photons m-2s-1)
No Chl b                                                                                                      0.8


                                 WT                                                                           0.6


             Reduced                                                                                          0.4
                                                                                                                                                          CC-424
               Chl b
                                                                                                                                                          CR-118
                                                                                                              0.2                                         CR-133
                                                                                                                                                          cbs3
                                                                                                              0.0
                                                                                                                                                            15
                                                                                                                    1     2        3   4    5     6   7
  Low       Chl fluorescence    High                                                                                              Growth (days)
2012 AFOSR Spring Review:
     Bioenergy (3003P)




 Enzymatic Fuel Cell




     DISTRIBUTION A: Approved for public release; distribution is unlimited.   16
Fundamentals and Bioengineering of
            Enzymatic Fuel Cells: Seven Labs Including AFRL
Objectives:                                                             Technical Approach:
(1) Exploit biochemical reactions for converting chemical               • Provide multi-enzyme
to electrical energy and for generating power from fuels                  cascades for full utilization
readily available in the environment.                                     of complex biofuels
(2) Estimate the specific power and energy limits of                    • Protein engineering of
enzyme fuel cells to define                                               enzymes to improve
potential powering uses                                                   bioelectrocatalysts
(3) Transition technology                                               • Establish mechanisms of electron transfer
towards sub-miniature
                                                                        • Design and fabricate novel electrode architectures for
sustainable mobile power
                                                                          enhanced performance
sources

Accomplishments:                                                        DoD Benefit:       Energy technology platform for
                                                                        scalable power generation. Particularly useful at
• Developed multi-enzyme cascades for complete
                                                                        miniature and micro-levels. Enabling
oxidation of biofuels, enhancing energy density
                                                                        technology for sensors and                     W
• Modeling identified major obstacles in multi-step                     MEMS devices                     100 mW
enzyme catalysis—electrode surface area and co-factor                                              10 mW
(NAD) instability                                                                     mW
• Engineered enzymes to self-assemble into conducting                    µW
hydro-gels and broadened their specificity to accept
both NAD & NADP
• Determined O2 binding site in multi-copper oxidases public release; distribution is unlimited.
                                   DISTRIBUTION A: Approved for                                                              17
Integrated Enzymatic Biofuel Cell
                                                                                               Atanassov (UNM)
   Deposition and characterization of poly-(methylene green) catalysts for NADH oxidation
                              Deposition by cyclic voltammetry                                                                                                                           Electrochemical characterization
                           1000                                                  2D glassy carbon              3D reticulated vitreous                                               1000
                                                                                                               carbon
Current density (µA/cm2)




                                                                                                                                                                                                                                  10 cycles
                           800                                                                                                                                                           800                                      25 cycles
                                    1st cycle                                                                                                                                                                                     50 cycles
                           600                              polymerization                                                                                                                                                        200 cycles
                                                                                                                                                                                         600
                                  oxidation
                           400                                    shoulder            PMG




                                                                                                                                                                          Current (µA)
                                                                                                                                                                                         400
                           200
                                                     10th cycle
                                                                                                    GC
                             0                                                                                                                                                           200

                                                reduction
                           -200                                                                                                                                                            0
                              -0.6 -0.4 -0.2 0.0 0.2 0.4 0.6 0.8 1.0 1.2 1.4                                                                                                                   0                     2                    4         6        8    10    12    14
                                    Potential vs. Ag/AgCl (mV)                                                                                                                                                                                [NADH] (mM)
   Integration of poly-(MG) modified                                                 Integration with laccase-based                                Polarization and power curves in 475 ethanol
   RVC with NAD+-dependent enzymes                                                   bio-cathode in a flow-through                                            E0 cell = 0.618 V, pH = 6.3
   immobilized in chitosan/CNTs                                                      membrane-less biofuel cell                                                 Limiting current = 160 µA
   composite scaffold                                                                                                                                      Maximum power density = 27 µW/cm3
                                                                                                                                                                                                                                 30
                                                                                                                                         0.6                        Laccase cathode




                                                                                                                                                                                                   Power/anode volume (µW/cm3)
                                                                                                                                                                    vs. Ag/AgCl
                                                                                                                                         0.5


                                                                                                                      Cell voltage (V)
                                                                                                                                         0.4                                                                                     20
                                                                                                                                                       Anode vs.
                                                                             3-D Anode                                                                 cathode
                                                                                                                                         0.3

                                                                                                                                         0.2                                                                                     10
                                                                                                                                             ADH anode
                                                                              Cathode
                                                                                                                                         0.1
                                                                                                                                             vs. Ag/AgCl
                                                                             open to air                                                 0.0
                                                                                                                                                                                                                                 0
                                                                                                                                               0      30     60    90   120              150                                          0        20       40       60    80    100   120
                                                                                                                                                                                                                                                                             18
                                                                                                                                                                                                                                                                               3
                                                                                                                                                           Current (µA)                                                                       Current/anode volume (µA/cm )
88 Personnel Involved in the Research: June 1, 2011
51 Supported by the MURI Program
  6 University PIs and
  8 Collaborators                                 + and 3 more…
  88 Researchers involved

          51 of them supported fully or in part by the MURI

  5 Research Faculty / Senior Researchers
  18 Postdoctoral Fellows
  34 Graduate Students
  31 Undergraduate Students and 2 High School Students




                                                                                                      11 Hispanics
            36 Female
            42 Male                                                        2 African American
                                                                      1 Native American
                            DISTRIBUTION A: Approved for public release; distribution is unlimited.                  19
ISI Publication Record on Enzymatic Fuel Cells: 1992 - 2011
AFOSR MURI: Fundamentals & Bioengineering of Enzyme Fuel Cells


          Enzymatic Fuel Cell Papers
          Published by the MURI Team




                        DISTRIBUTION A: Approved for public release; distribution is unlimited.   20
Peer-Reviewed Journal Publications: June 1, 2011
99 Publications & Book Chapters and 6 Patent Applications
74 Published                 16 Submitted or                                           9 In
                                    In Press                                           Prep.




2010 Special Issue of                              3 US Patent Applications
Electroanalysis on Biofuel Cells
                                                                       ~ 75 Department Seminars,
   ~ 215 Presentations at Conferences,                                 Press Releases,
   With abstracts published in the                                     Interface article (ECS)
   Conference Proceedings,                                             Media Coverage,
   Including ~80 invited talks.                                        Issue Guest Editing.
                         DISTRIBUTION A: Approved for public release; distribution is unlimited.   21
Controlling Direct Electron Transfer (DET)
                   Between Electrodes and Conductive Materials
                            Johnson & Pachter (AFRL) & Atanassov (UNM)
Objectives: Devise means to characterize and organize the                                                                           O2 reduction
interface between redox-active enzymes and nanomaterials

•   Background: DET requires an electronic interface for
    electrons to “hop” from enzyme to the electrode surface.
    Multi-copper containing oxidases (MCO) serve as model                                                           PBSE as Enzyme-CNT tether
    bioelectrocatalysts for fuel cell cathode, accepting electrons                                       100
                                                                                                                         1
    from electrode and then catalyzing O2 reduction.




                                                                                     Current (µA cm-2)
                                                                                                          0
                                                                                                                 4
                                                                                                                                         onset
•   Approach: Various MCO were linked to carbon nanotubes                                           - 100                                of O2
                                                                                                                                       reduction
                                                                                                                2
    (CNT) using a chemical “tethering” reagent (1-pyrene butanoic                                   - 200                            1 Lac-adsorbed
    acid, succinimidyl ester (PBSE)). The method conjugates the                                                                        Torey paper
                                                                                                    - 300            3               2 CNT / Lac
    enzyme and CNT without changing material conductivity.                                                                           3 CNT / PBSE / Lac
                                                                                                                                     4 Electrode (3) in N2
                                                                                                    - 400
•   Results: Electrochemical potential and kinetics of O2 reduction                                           -0.4 -0.2 0    0.2 0.4 0.6 0.8       1
    reaction approach theoretical optima (+600 mV vs. Ag/AgCl)                                                   Potential (V) vs. Ag/AgCl

    High-potential maintained under increased current density,
    <100 mV decrease @ 50 mA cm-2
    Bioelectrodes provided exceptional DET.
•   Conclusion: Materials and processing approach
    accommodates various biocatalysts and is potentially scalable
    → significant advance over previous literature reports → key
    steps toward application. Cover feature on Chemrelease; distribution is unlimited.
                                                                    Comm                                      Chemical Communications 46:6045-
                                DISTRIBUTION A: Approved for public
                                                                                                               6047                         22
2012 AFOSR Spring Review:
     Bioenergy (3003P)



   Microbial Fuel Cells
 (MURI and Core Funding)

                                            e - e - e- e- e- e-
                                          e-                 e-
                                          e-
                                          e -                e-
                                                                                                  Fumarate              Succinate
                                          e -                 e-
                                                              e-                                  Fe 3+                 Fe 2+
                                                     Proton Exchange Membrane




                                          e -
                     Acetate                                  e-                                  O2                    H 2O
                                          e-
   Lactate            + CO 2
                                           e  -               e-
                                           e-
                                          e  -                e-
                      H+                   e-                e-
                                                                                                                MtrB?
        NADH                              e-                  e-
              e-                                                                                               e-
                     e-                   e-
              CymA        MtrB   e-                           e-                                        CymA?
                                          e-                  e-                                          e-
                                      e- e-                                              e- e-     e-
             Anode electrode                                                         H + H+   Cathode electrode
                                              H+ H + +                          H+
                                                    H




                   DISTRIBUTION A: Approved for public release; distribution is unlimited.                                          23
Optimizing Microbial Fuel Cells via Genetics,
              Modeling and Nanofabrication: Seven Labs
 Objective:                                                                Technical Approach:
 To understand the                                                         • Identification & regulation of the genes, molecular
                                                                              machines and structures used to produce and
 mechanism(s) involved in                                                     transfer current between microbe and electrode                                            e- e-          e- e-                        e- e-

 microbial current production,                                                                                   Microbial                                           e-
                                                                                                                                                                      e-
                                                                                                                                                                                                                       e-
                                                                                                                                                                                                                             e-
                                                                                                                                                                                                                                              Fuel Cell
                                                                           • Modeling &                          WT under anaerobic
                                                                                                                                                                      e-                                                     e-                     WT or mutant under aerobic

 and to utilize multi-scale                                                                                          conditions                                        e-                                                    e-                     (O2) or anaerobic (fumarate)
                                                                                                                                                                     e-                                                      e-




                                                                                                                                                                                        Proton Exchange Membrane
                                                                                                                                                                                                                                             e-              conditions
                                                                           bioengineering                                                                          e-




                                                                                                                                                                                                                         Cathode electrode
                                                                                                                                                                    e-                                                                        e-




                                                                                                                                                                     Anode electrode
 modeling to exploit this
                                                                                                                                                                   e-




                                                                                                                                                       MtrC-OmcA
                                                                                                                                                                                                                                             e-                            O2




                                                                                                                                         e-MtrA/B e-




                                                                                                                                                                                                                                              e-
                                                                                                              Acetate

                                                                           • Development &




                                                                                                                                                                                                                                                   e-
                                                                                                                                                                                                                                                    ???
                                                                                                               + CO2                                                                                                                                                       Fumarate




                                                                                                                            H+
 understanding in order to




                                                                                                                                                                                                                                                               Reductase
                                                                                                                                                                                                                                                          e-
                                                                                                                                             CymA
                                                                            exploitation of




                                                                                                                                    e-
                                                                                                                                 NADH
                                                                                                                                                       e-                                                                                          e-                      H2O

 optimize microbes and                                                      microbial consortia               Lactate                                                        H+ H+
                                                                                                                                                                                       H+
                                                                                                                                                                                                                   H+
                                                                                                                                                                                                                        H+ H+




 microbial communities for                                                  with the ability to utilize a wide range of energy
 microbial fuel cells.                                                      sources
                            Current transfer by nanowires… • Modeling, fabrication & testing of miniaturized MFCs

Accomplishments:                                                         …and/or soluble mediators?

• Identified current associated genes in Shewanella
• Developed novel vertical scanning interferometry for
interfacial analysis at electrode surface
                                                                           DoD Benefit:
• Characterized the bacterial behavior of electrokinesis
                                                                           This project may enable high performance microbial
• Showed the value               Bacterial Biofilm Formation               fuel cells as power sources. The ability to use multiple
of bacterial biofilms                                                      complex fuels under changing physical and chemical
in current production                                                      conditions may enhance capabilities.

                                    DISTRIBUTION A: Approved for public release; distribution is unlimited.                                                                                                                                                                      24
Molecular Identification of Bacterial Nanowires and Their
                Role in Microbial Fuel Cells: Ringeisen (NRL)
                             Spring ReviewFY2012
Objective: Use a variety of microbial fuel cell (MFC) platforms to correlate structure and
function of extracellular nanofilaments with rate of extracellular electron transfer (current
generation). Measure conductivity and protein identification of bacterial nanofilaments.


                                                  Analysis of S. oneidensis nanofilaments has determined
  Technology Platforms Used                      that a previously unsuspected protein (mannose sensitive
 for Protein ID of Shewanella                    haemagglutinin, MSH) is involved in extracellular electron
 oneidensis MR-1 Nanowires                                  transfer (EET) in microbial nanowires
                                                                                                         flagellum
                                                  Extracellular Protein
•Miniature MFCs                                    ID in Nanofilament                             MSH pili
                                                  Preps via LC/MS/MS
•Direct Write Nanoelectrodes
                                                             MSHA
                                                                                                                 Pre-Electrodes               Post-Electrodes
•Immunolabeling and                                          MSHB
                                                                                                                        0.5 µm                            1 µm


Transmission Electron
                                                           Flagellin                                            Resistance = 297 MΩ
Microscopy (TEM)                                                                                                Calculated Resistivity = 0.5 ± 0.1 Ω cm
                                               Anti-MSHA labeled                                                Band Gap = 0.37 eV
                                                Au Nanoparticle
•Liquid Chromatography/Mass                          TEM

Spectrometry/Mass
Spectrometry (LC/MS/MS)
•Temperature-Controlled
Probe Station                  DISTRIBUTION A: Approved for public release; distribution is unlimited.                                                           25
2012 AFOSR Spring Review
                     3003P Portfolio

            Photo-Electro-Magnetic
            Stimulation of Biological
                  Responses
                (Core Funding)
 Photo-Electro-Magnetic Stimulation of Biological Responses is a beginning
program that characterizes, models and explains the stimulatory and inhibitory
responses of biological systems to low-level exposures of photo-electro-magnetic
stimuli. Potential long-term benefits may include accelerated recovery from mental
fatigue and drowsiness, enhanced learning and training, and noninvasive treatment
of traumatic brain injuries. (~20% of portfolio)
                          DISTRIBUTION A: Approved for public release; distribution is unlimited.   26
Electric Stimulation of the Brain,
               Hemodynamics and Sustained Attention:
                                                   McKinley (AFRL/RH)
Objective: Quantify effects on human vigilance and hemodynamics due to
non-invasive stimulation of the brain by low levels of direct current (1 mA).

                                                                                                       Early Stimulation
  NEW
                                                                                      115.00%




                                                             % Change From Baseline
PROJECT                                                                               105.00%

  2011                                                                                 95.00%

                                                                                       85.00%                                                                     Active
                                                                                                                                                                  SHAM
                                                                                       75.00%

                                                                                       65.00%
                                                                                                0   10     20        30   40                           50

                                                                                                            Time [Mins]
                                                                                                                                                             Blood Flow (Active vs. Sham)
                                                                                                                                                   104.00%




                                                                                                                          % Change From Baseline
                                                                                                                                                   102.00%
                                                                                                                                                   100.00%
                                                                                                                                                    98.00%
                                                                                                                                                    96.00%                                    Blood Flow - Sham
                                                                                                                                                    94.00%                                    Blood Flow - Active
                                                                                                                                                    92.00%
                                                                                                                                                    90.00%
                             Gordon et al., 2009
                                                                                                                                                             0   10    20    30     40   50

                                                                                                                                                                      Time [Mins]
                           Astrocytes               rCBF    Moore & Cao,
                           …?                               2008
             Anodal                                   Information     Vigilance
                           P(APs)        rSO2                                                                      CO2                             rCBF
             Stim.                                    processing      Perform.


                                                                                           Potential
                                                                                           Metrics
             Merzagora et al.,                Helton et al., 2010                    Hellige, 1993 &
             2010              DISTRIBUTION A: Approved for public release; distribution is unlimited.
                                                                                   Warm et al., 2009                                                                                                                27
Coupling Terahertz Radiation to Biomolecules
                                    for Controlling Cell Response: Wilmink (AFRL/RHDR)


Terahertz (THz) Radiation:                                       NEW PROJECT 2011
• Alters lipid membranes and modulates neuronal action potentials.
• Oscillates in the same ps time-scale as breathing modes of DNA & proteins (~40 ps).
          Biomolecules display unique spectra in THz region                                               THz energy couples to biomolecules
           B            Water              C       Carbohydrates    D       DNA (nucleotides)
          700
                                         250
                                                        Glucose                                           THz
                                                                                                                        1. Lipid membrane
          600                            200

µa        500
                                         150
                                                        Galactose
                                                                                                                        2. Protein
      400
                                                        Mannose
      )   300                            100
          200
                                         50             Fructose                                                             3. DNA
          100

           0                              0
                0   1    2      3    4         0    1   2     3     4   0      1    2   3    4
                Frequency (THz)                Frequency (THz)          Frequency (THz)

          Objectives: Investigate coupling mechanism and exploit the understanding to
                      activate adaptive responses and modify cellular behaviors
 Working Hypothesis:                                                        Macromolecule-bound
                                                                                  water
                                                                                                                Testing Hypothesis:
 THz-coupling is                                                                                                • THz exposure system on a
 mediated via                                                                                                     microscope
 macromolecule-bound                                                                                            • Raman & THz spectroscopy
 water on the surface of                                                                                        • Fluorescence & atomic force
 membranes and                                                                                    Bulk
                                                                                                                  microscopy                 28
 biomolecules                                                                                     water         • DNA mutation assays
Related Research
                  Funded by Other Agencies
Funding Criteria:                                                                        Materials
                                                                            Chemistry
1. Basic research of high quality and relevant to the AF                               Biology Physics
2. Unique or complementary, but non-duplicative—finds a “niche”
                                                                               Engineering Math
3. Leverages research in other agencies
4. Critical mass or team of collaborators with focused, multi-disciplinary research objectives
Algal Oil: DOE and DARPA research application oriented; NSF funds mostly individual grants of
smaller size that are not based on a coordinated, multi-disciplinary team approach; USDA
interested in farming aquaculture; EPA interested in regulation. AFOSR niche is lipid biosynthesis
via systems biology. AFOSR has collaborated with DOE-NREL since 2006 and coordinates
research as member of emerging Algal Interagency Working Group.
Biosolar Hydrogen: DOE and NSF fund mostly individual grants of smaller size that are not
based on a coordinated, multi-disciplinary team approach. AFOSR niche is systems biology and
bioengineering for enhanced H2 production. AFOSR has collaborated with DOE-NREL since 2003.
Biofuel Cells: ONR funds only microbial fuel cell (MFC) research for dissolved nutrients in the
marine sediment environment. AFOSR funds enzymatic and MFC research for solid substrates in
terrestrial environments and coordinates research via ONR reviews and direct personal contact.
Artificial Photosynthesis: This topic is biologically oriented and part of a 2009 AFOSR Initiative
“Catalysts for Solar Fuels” with PMs Berman and Curcic, whose topics are chemically and
physically oriented. To our knowledge there are no initiative counterparts at other agencies.
BioResponse to Photo-electromagnetic Stimulation: Complementary to other funded research.
                           DISTRIBUTION A: Approved for public release; distribution is unlimited. 29

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Bradshaw - Bioenergy - Spring Review 2012

  • 1. Bioenergy 06 MAR 2012 Dr. Patrick O. Bradshaw Program Manager AFOSR/RSL Integrity  Service  Excellence Air Force Research Laboratory 2 March 2012 DISTRIBUTION A: Approved for public release; distribution is unlimited. 1
  • 2. 2012 AFOSR Spring Review Portfolio Overview NAME: Patrick O. Bradshaw, Ph.D. BRIEF DESCRIPTION OF PORTFOLIO: • Bioenergy is a program that characterizes, models and explains the structural features, metabolic functions and gene regulatory mechanisms utilized by various biological systems to capture, transfer, convert, or store energy for the purpose of producing renewable biofuels and improving the power output of biofuel cells. (~80% of portfolio) Sub-Areas: (1) BioSolar Hydrogen, (2) Algal Oil (3) Artificial Photosynthesis, and (4) Biofuel Cells (Microbial and Enzymatic) • Photo-Electro-Magnetic Stimulation of Biological Responses is a beginning program that characterizes, models and explains the stimulatory and inhibitory responses of biological systems to low-level exposures of photo-electro-magnetic stimuli. Potential long-term benefits may include accelerated recovery from mental fatigue and drowsiness, enhanced learning and training, and noninvasive treatment of traumatic brain injuries. (~20% of portfolio) DISTRIBUTION A: Approved for public release; distribution is unlimited. 2
  • 3. Visionary Transformational AF Capabilities Bioenergy: • Biofuel Produced from CO2, H2O and Sunlight: - Algal systems biology data used to bioengineer lipid biosynthetic pathways in microbes or to create novel synthetic pathways in artificial solar fuel systems • Portable H2 Fuel Generated from H2O or Cellulose: - Cheap, self-healing inorganic catalysts split water into H2 and O2 - Engineered photosynthetic microbes produce H2 fuel • Compact Power from Ambient Biomass: - Efficient electron transport coupled with unique electrode architectures enhance power and energy densities of biofuel cells Photo-electro-magnetic Stimulation of Bio-Responses: • Electromagnetically Enhanced Cognition, Protection and Healing: - low-level exposure with photo-electro-magnetic stimuli enhance cognitive functions, bio-molecular repair and bio-resiliency DISTRIBUTION A: Approved for public release; distribution is unlimited. 3
  • 4. Overview of Topic Areas 3003P Bioenergy: Alternative Energy • Biofuels—Macro-scale Energy • Biofuel Cells—Micro-scale Energy • Biosolar Hydrogen • Algal Oil for Jet Fuel • Enzymatic Fuel Cells • Synthetic Biology • Microbial Fuel Cells • Artificial Photosynthesis H2 Small Vehicles, Sun Photosynthesis Fuel Fuel Cells portable power Robofly Natural to Artificial Biofuel Cells MAV Future Direction • Photo-Electro-Magnetic Stimulation of Biosystems • Biomarkers, Physiological responses and toxicology • Synthetic Biology – explore non coding genetic information DISTRIBUTION A: Approved for public release; distribution is unlimited. 4
  • 5. Bioenergy: A Progressive Research Strategy Natural to Artificial Sun Photosynthesis Fuel Biofuel Cells POWER Generation 1st 2nd 3rd 4th Natural Optimized Natural Hybrid Artificial System Biosystems Type Biosystems Systems Systems Basic Characterization Metabolic/ Synthetic Chemistry & Research Mechanisms Protein Biology Materials Type Models Engineering Science Disciplinary Biology Chemistry Inputs Math Physics Engineering DISTRIBUTION A: Approved for public release; distribution is unlimited. 5
  • 6. Challenges, Opportunities and Breakthrough Examples Natural Systems Research: Challenge: Explain gene regulatory mechanisms of metabolic pathways and networks Payoffs: - potentially economical viable biofuels - enhanced energy density of microbial fuel cells (MFC) Challenge: Understand mechanisms and kinetics of enzyme-catalyzed reactions Payoffs: - enhanced energy density of enzymatic fuel cells (EFC) - sustained oxygen-tolerant hydrogen production by photosynthetic microbes Artificial Systems Research: Challenge: Discover/fabricate cheap, durable synthetic materials that mimic the enzymatic or structural functions in natural energy systems Payoffs: - cheap water-splitting catalysts as platinum replacements in H2-generating devices - enhanced power and energy densities for EFC Challenge: Integrate and assemble nano-scale inorganic/organic/bio-materials Payoffs: - ordered enzyme alignments for enhanced power densities in EFC - enhanced electron transport and power density in biofuel cells - light is harvested and split in artificial photosynthetic solar fuel generator DISTRIBUTION A: Approved for public release; distribution is unlimited. 6
  • 7. Photosynthesis, Systems Biology and Metabolic Engineering for the Production of Biofuels Microalgae & Cyanobacteria Make Hydrogen, Lipids & Sugars Light Reactions PSI and PSII Dark Reactions Triglyceride (Oil) light chlorophyll Lipid Synthesis Jet Fuel _ 4e CO2 Sugar/Cellulose 4 H+ Synthesis Ethanol water-splitting 2 H2O enzyme H2-generating carbon-fixing hydrogenase H2 enzyme Three Key Biocatalysts enzyme Overview of Research Strategy AFOSR & DOE (NREL) Collaboration mutants HoxE HoxF ORF? HoxU HoxY HoxH Nco I (3375) Nco I (6934) Bam HI (1484) Cla I (2981) Eco RI (4977) Nco I (1099) Cla I (7047) screening genome genes diaphorase moiety Ni-Fe hydrogenase moiety genom sequence around hox genes in S. platensis ic field 7098 bp DISTRIBUTION A: Approved for public release; distribution is unlimited. 7
  • 8. 2012 AFOSR Spring Review: Bioenergy (3003P) Biosolar Hydrogen (MURI and Core Funding) DISTRIBUTION A: Approved for public release; distribution is unlimited. 8
  • 9. Bio-Solar Hydrogen Production Eight Labs Including AFRL & DOE Objective: Light + 2 H2O  O2 + 2 H2 (H+/e-) Technical Approaches: • Obtain knowledge of the • Bio-prospecting new strains & species basic scientific principles H2 Detectors governing H2 production in • New H2 detection & analytical methods microalgae and cyanobacteria H2 Rate H2 Yield • Stress responses and H2 production • Genetically engineer • Systems biology and pathway analyses • Electrode consumes H2 pathways to improve the • Extended spectral range H2 producing capacity of • Increased light source • Genetic engineering of pathways these phototrophs intensity 500X with LED Accomplishments: DoD Benefit: •Developed techniques for high throughput Sun 1. Stable fuel supply & price screening of H2-producing phototrophs 2. Energy independence •Identified physiological factors for increasing Photosynthesis 3. Carbon neutral rates & yields of cellular H2 production 4. Anti-climate change •Engineered metabolic pathways with Fuel increased production of H2 POWER DISTRIBUTION A: Approved for public release; distribution is unlimited. 9
  • 10. BioSolar H2 Cyanobacterial Metabolism Improving Cellular Fuel Production Efficiency Dismukes (Rutgers) direct H+ + e- photo-H2 Indirect (dark) H+ H+ H+ H2O O2 ∆Ψ H+ H+ auto- H+ H+ H+ photosynthesis storage fermentation e- e- e- - e- ee- hydrogenase H2 NADH compounds e- - e- e- e- e- e Targets for Protein Engineering Channeling reductant Revealed NO3- master Identified the metabolic NADH is reductant for flux through one of two switch between bottleneck in glycogen phase II H2 and NAD+ is NADH enzymes glycolysis (GLY) & fermentation feedback inhibitor of increases photo-H2 oxidative pentose hydrogenase phosphate (OPP) + Flavone Reductant & “Thauer Limit” Control GLY OPP at GAPDH 10 - NO3 + NO3
  • 11. “Milking” More H2 by Co-Fermentation PI: G. C. Dismukes Spring Review FY12 Separate Growth 3 weeks 3 days Cyanothece sp. + Synechococcus sp. “photo” fermenter “dark” fermenter Co-Fermentation *Rate of Dark+Photo H2 ↑ from Cyanothece is limited by intracellular reductant glycogen *Syn. WT excretes reductant as lactate which stimulates 2x H2 from mixed cultures with Cyanothece *SynLdhAEx Over-expression strain excretes more lactate than Syn WT and stimulates H2 even more by 2.5x DISTRIBUTION A: Approved for public release; distribution is unlimited. 11
  • 12. 2012 AFOSR Spring Review: Bioenergy (2308C) Algal Oil DISTRIBUTION A: Approved for public release; distribution is unlimited. 12
  • 13. Algal Oil Ten Labs Including DOE and USAFA Objective: Gain knowledge of basic algal Technical Approach: biology needed to engineer and enhance • Partner with DOE’s National Renewable Energy Lab photosynthetic and lipid biosynthetic pathways • Bioprospect for new lipid-producing algal strains AFOSR DOE • Optimize light capture and photosynthetic efficiency • Optimize environmental factors for lipid biosynthesis • Use systems biology (“omics”) to map lipid pathways Industry • Identify genetic targets and model metabolism • Build genetic tools for enabling algal bioengineering Accomplishments: AF Benefit: • Screened1200 algal strains for oil yield and identified 50 candidate strains for future studies Sun 1. Stable fuel supply & price 2. Oil independence • High pH raises oil yields further in NO3-stressed cells 3. Carbon-neutral Photosynthesis •Transformed carbonic anhydrase into algal genome, 4. Anti-climate change resulting in CO2 availability and enhanced growth rate Fuel • Cell cycle arrest or silica starvation elevates lipid production in brown algae (diatoms) POWER • Identified proteins involved in forming intracellular lipid droplets and in controlling their storage capacity DISTRIBUTION A: Approved for public release; distribution is unlimited. 13
  • 14. Systems Biology for Algal Lipid Pathway Analyses: A 7 Lab Collaboration Objectives: Next generation RNA Sequencing technologies are used to compare gene expression profiles in lipid- and non-lipid-producing algae X X A Transcriptomics Proteomics T1 Metabolomics T1 P A1A Benning (MSU) A1A1 A1A Hildebrand (UCSD) P Seibert (NREL) B1B1 B1A ∆Mi B1A R Merchant (UCLA) Sayre (Danforth) S1 S P1 P 1 1 O A Bioinformatics: Computational Biology: Data collection & Mathematical modeling & C processing pathway mapping H Pellegrini (UCLA) Rabinowitz (Princeton) Recent Findings: • 3 time-course experiments analyzed by RNA-Sequencing: from 0 to 48 h • DGAT1, triglyceride synthesis enzyme, is induced early in the time course • A transcription factor, NRTF1, is co-expressed with DGAT1 • Developed a web-based protein function annotation tool for algal genomes (http://pathways.mcdb.ucla.edu/chlamy/) release; distribution is unlimited. DISTRIBUTION A: Approved for public 14
  • 15. Enhanced Photosynthetic Efficiency & Algal Growth by Optimizing Light Harvesting Antennae Size Richard Sayre (Danforth Plant Science Center) 1.4 Transgenic algae with FACT: Growth in low light reduced Chl b have: At full sunlight 75% of the captured 1.2 (50 µmol 1) Reduced antennae energy is given off as fluorescence photons m-2s-1 ) 1.0 Culture Density (OD 750) size or heat. 2) Reduced steady state 0.8 fluorescence HYPOTHESIS: Reducing the antennae size 0.6 No Chl WT Chl Deficient optimizes energy transfer between the antennae and reactions centers 0.4 Chl a/b 2.2 ∞ 4.0 4.9 RESULT: 0.2 Reductions in Chl b levels reduced 0.0 the antennae size resulting in a 30% 1 2 3 4 5 6 7 increase in biomass yield at high Growth in high light light intensities relative to wild type 1.0 (500 µmol +30% photons m-2s-1) No Chl b 0.8 WT 0.6 Reduced 0.4 CC-424 Chl b CR-118 0.2 CR-133 cbs3 0.0 15 1 2 3 4 5 6 7 Low Chl fluorescence High Growth (days)
  • 16. 2012 AFOSR Spring Review: Bioenergy (3003P) Enzymatic Fuel Cell DISTRIBUTION A: Approved for public release; distribution is unlimited. 16
  • 17. Fundamentals and Bioengineering of Enzymatic Fuel Cells: Seven Labs Including AFRL Objectives: Technical Approach: (1) Exploit biochemical reactions for converting chemical • Provide multi-enzyme to electrical energy and for generating power from fuels cascades for full utilization readily available in the environment. of complex biofuels (2) Estimate the specific power and energy limits of • Protein engineering of enzyme fuel cells to define enzymes to improve potential powering uses bioelectrocatalysts (3) Transition technology • Establish mechanisms of electron transfer towards sub-miniature • Design and fabricate novel electrode architectures for sustainable mobile power enhanced performance sources Accomplishments: DoD Benefit: Energy technology platform for scalable power generation. Particularly useful at • Developed multi-enzyme cascades for complete miniature and micro-levels. Enabling oxidation of biofuels, enhancing energy density technology for sensors and W • Modeling identified major obstacles in multi-step MEMS devices 100 mW enzyme catalysis—electrode surface area and co-factor 10 mW (NAD) instability mW • Engineered enzymes to self-assemble into conducting µW hydro-gels and broadened their specificity to accept both NAD & NADP • Determined O2 binding site in multi-copper oxidases public release; distribution is unlimited. DISTRIBUTION A: Approved for 17
  • 18. Integrated Enzymatic Biofuel Cell Atanassov (UNM) Deposition and characterization of poly-(methylene green) catalysts for NADH oxidation Deposition by cyclic voltammetry Electrochemical characterization 1000 2D glassy carbon 3D reticulated vitreous 1000 carbon Current density (µA/cm2) 10 cycles 800 800 25 cycles 1st cycle 50 cycles 600 polymerization 200 cycles 600 oxidation 400 shoulder PMG Current (µA) 400 200 10th cycle GC 0 200 reduction -200 0 -0.6 -0.4 -0.2 0.0 0.2 0.4 0.6 0.8 1.0 1.2 1.4 0 2 4 6 8 10 12 14 Potential vs. Ag/AgCl (mV) [NADH] (mM) Integration of poly-(MG) modified Integration with laccase-based Polarization and power curves in 475 ethanol RVC with NAD+-dependent enzymes bio-cathode in a flow-through E0 cell = 0.618 V, pH = 6.3 immobilized in chitosan/CNTs membrane-less biofuel cell Limiting current = 160 µA composite scaffold Maximum power density = 27 µW/cm3 30 0.6 Laccase cathode Power/anode volume (µW/cm3) vs. Ag/AgCl 0.5 Cell voltage (V) 0.4 20 Anode vs. 3-D Anode cathode 0.3 0.2 10 ADH anode Cathode 0.1 vs. Ag/AgCl open to air 0.0 0 0 30 60 90 120 150 0 20 40 60 80 100 120 18 3 Current (µA) Current/anode volume (µA/cm )
  • 19. 88 Personnel Involved in the Research: June 1, 2011 51 Supported by the MURI Program 6 University PIs and 8 Collaborators + and 3 more… 88 Researchers involved 51 of them supported fully or in part by the MURI 5 Research Faculty / Senior Researchers 18 Postdoctoral Fellows 34 Graduate Students 31 Undergraduate Students and 2 High School Students 11 Hispanics 36 Female 42 Male 2 African American 1 Native American DISTRIBUTION A: Approved for public release; distribution is unlimited. 19
  • 20. ISI Publication Record on Enzymatic Fuel Cells: 1992 - 2011 AFOSR MURI: Fundamentals & Bioengineering of Enzyme Fuel Cells Enzymatic Fuel Cell Papers Published by the MURI Team DISTRIBUTION A: Approved for public release; distribution is unlimited. 20
  • 21. Peer-Reviewed Journal Publications: June 1, 2011 99 Publications & Book Chapters and 6 Patent Applications 74 Published 16 Submitted or 9 In In Press Prep. 2010 Special Issue of 3 US Patent Applications Electroanalysis on Biofuel Cells ~ 75 Department Seminars, ~ 215 Presentations at Conferences, Press Releases, With abstracts published in the Interface article (ECS) Conference Proceedings, Media Coverage, Including ~80 invited talks. Issue Guest Editing. DISTRIBUTION A: Approved for public release; distribution is unlimited. 21
  • 22. Controlling Direct Electron Transfer (DET) Between Electrodes and Conductive Materials Johnson & Pachter (AFRL) & Atanassov (UNM) Objectives: Devise means to characterize and organize the O2 reduction interface between redox-active enzymes and nanomaterials • Background: DET requires an electronic interface for electrons to “hop” from enzyme to the electrode surface. Multi-copper containing oxidases (MCO) serve as model PBSE as Enzyme-CNT tether bioelectrocatalysts for fuel cell cathode, accepting electrons 100 1 from electrode and then catalyzing O2 reduction. Current (µA cm-2) 0 4 onset • Approach: Various MCO were linked to carbon nanotubes - 100 of O2 reduction 2 (CNT) using a chemical “tethering” reagent (1-pyrene butanoic - 200 1 Lac-adsorbed acid, succinimidyl ester (PBSE)). The method conjugates the Torey paper - 300 3 2 CNT / Lac enzyme and CNT without changing material conductivity. 3 CNT / PBSE / Lac 4 Electrode (3) in N2 - 400 • Results: Electrochemical potential and kinetics of O2 reduction -0.4 -0.2 0 0.2 0.4 0.6 0.8 1 reaction approach theoretical optima (+600 mV vs. Ag/AgCl) Potential (V) vs. Ag/AgCl High-potential maintained under increased current density, <100 mV decrease @ 50 mA cm-2 Bioelectrodes provided exceptional DET. • Conclusion: Materials and processing approach accommodates various biocatalysts and is potentially scalable → significant advance over previous literature reports → key steps toward application. Cover feature on Chemrelease; distribution is unlimited. Comm  Chemical Communications 46:6045- DISTRIBUTION A: Approved for public 6047 22
  • 23. 2012 AFOSR Spring Review: Bioenergy (3003P) Microbial Fuel Cells (MURI and Core Funding) e - e - e- e- e- e- e- e- e- e - e- Fumarate Succinate e - e- e- Fe 3+ Fe 2+ Proton Exchange Membrane e - Acetate e- O2 H 2O e- Lactate + CO 2 e - e- e- e - e- H+ e- e- MtrB? NADH e- e- e- e- e- e- CymA MtrB e- e- CymA? e- e- e- e- e- e- e- e- Anode electrode H + H+ Cathode electrode H+ H + + H+ H DISTRIBUTION A: Approved for public release; distribution is unlimited. 23
  • 24. Optimizing Microbial Fuel Cells via Genetics, Modeling and Nanofabrication: Seven Labs Objective: Technical Approach: To understand the • Identification & regulation of the genes, molecular machines and structures used to produce and mechanism(s) involved in transfer current between microbe and electrode e- e- e- e- e- e- microbial current production, Microbial e- e- e- e- Fuel Cell • Modeling & WT under anaerobic e- e- WT or mutant under aerobic and to utilize multi-scale conditions e- e- (O2) or anaerobic (fumarate) e- e- Proton Exchange Membrane e- conditions bioengineering e- Cathode electrode e- e- Anode electrode modeling to exploit this e- MtrC-OmcA e- O2 e-MtrA/B e- e- Acetate • Development & e- ??? + CO2 Fumarate H+ understanding in order to Reductase e- CymA exploitation of e- NADH e- e- H2O optimize microbes and microbial consortia Lactate H+ H+ H+ H+ H+ H+ microbial communities for with the ability to utilize a wide range of energy microbial fuel cells. sources Current transfer by nanowires… • Modeling, fabrication & testing of miniaturized MFCs Accomplishments: …and/or soluble mediators? • Identified current associated genes in Shewanella • Developed novel vertical scanning interferometry for interfacial analysis at electrode surface DoD Benefit: • Characterized the bacterial behavior of electrokinesis This project may enable high performance microbial • Showed the value Bacterial Biofilm Formation fuel cells as power sources. The ability to use multiple of bacterial biofilms complex fuels under changing physical and chemical in current production conditions may enhance capabilities. DISTRIBUTION A: Approved for public release; distribution is unlimited. 24
  • 25. Molecular Identification of Bacterial Nanowires and Their Role in Microbial Fuel Cells: Ringeisen (NRL) Spring ReviewFY2012 Objective: Use a variety of microbial fuel cell (MFC) platforms to correlate structure and function of extracellular nanofilaments with rate of extracellular electron transfer (current generation). Measure conductivity and protein identification of bacterial nanofilaments. Analysis of S. oneidensis nanofilaments has determined Technology Platforms Used that a previously unsuspected protein (mannose sensitive for Protein ID of Shewanella haemagglutinin, MSH) is involved in extracellular electron oneidensis MR-1 Nanowires transfer (EET) in microbial nanowires flagellum Extracellular Protein •Miniature MFCs ID in Nanofilament MSH pili Preps via LC/MS/MS •Direct Write Nanoelectrodes MSHA Pre-Electrodes Post-Electrodes •Immunolabeling and MSHB 0.5 µm 1 µm Transmission Electron Flagellin Resistance = 297 MΩ Microscopy (TEM) Calculated Resistivity = 0.5 ± 0.1 Ω cm Anti-MSHA labeled Band Gap = 0.37 eV Au Nanoparticle •Liquid Chromatography/Mass TEM Spectrometry/Mass Spectrometry (LC/MS/MS) •Temperature-Controlled Probe Station DISTRIBUTION A: Approved for public release; distribution is unlimited. 25
  • 26. 2012 AFOSR Spring Review 3003P Portfolio Photo-Electro-Magnetic Stimulation of Biological Responses (Core Funding) Photo-Electro-Magnetic Stimulation of Biological Responses is a beginning program that characterizes, models and explains the stimulatory and inhibitory responses of biological systems to low-level exposures of photo-electro-magnetic stimuli. Potential long-term benefits may include accelerated recovery from mental fatigue and drowsiness, enhanced learning and training, and noninvasive treatment of traumatic brain injuries. (~20% of portfolio) DISTRIBUTION A: Approved for public release; distribution is unlimited. 26
  • 27. Electric Stimulation of the Brain, Hemodynamics and Sustained Attention: McKinley (AFRL/RH) Objective: Quantify effects on human vigilance and hemodynamics due to non-invasive stimulation of the brain by low levels of direct current (1 mA). Early Stimulation NEW 115.00% % Change From Baseline PROJECT 105.00% 2011 95.00% 85.00% Active SHAM 75.00% 65.00% 0 10 20 30 40 50 Time [Mins] Blood Flow (Active vs. Sham) 104.00% % Change From Baseline 102.00% 100.00% 98.00% 96.00% Blood Flow - Sham 94.00% Blood Flow - Active 92.00% 90.00% Gordon et al., 2009 0 10 20 30 40 50 Time [Mins] Astrocytes rCBF Moore & Cao, …? 2008 Anodal Information Vigilance P(APs) rSO2 CO2 rCBF Stim. processing Perform. Potential Metrics Merzagora et al., Helton et al., 2010 Hellige, 1993 & 2010 DISTRIBUTION A: Approved for public release; distribution is unlimited. Warm et al., 2009 27
  • 28. Coupling Terahertz Radiation to Biomolecules for Controlling Cell Response: Wilmink (AFRL/RHDR) Terahertz (THz) Radiation: NEW PROJECT 2011 • Alters lipid membranes and modulates neuronal action potentials. • Oscillates in the same ps time-scale as breathing modes of DNA & proteins (~40 ps). Biomolecules display unique spectra in THz region THz energy couples to biomolecules B Water C Carbohydrates D DNA (nucleotides) 700 250 Glucose THz 1. Lipid membrane 600 200 µa 500 150 Galactose 2. Protein  400 Mannose ) 300 100 200 50 Fructose 3. DNA 100 0 0 0 1 2 3 4 0 1 2 3 4 0 1 2 3 4 Frequency (THz) Frequency (THz) Frequency (THz) Objectives: Investigate coupling mechanism and exploit the understanding to activate adaptive responses and modify cellular behaviors Working Hypothesis: Macromolecule-bound water Testing Hypothesis: THz-coupling is • THz exposure system on a mediated via microscope macromolecule-bound • Raman & THz spectroscopy water on the surface of • Fluorescence & atomic force membranes and Bulk microscopy 28 biomolecules water • DNA mutation assays
  • 29. Related Research Funded by Other Agencies Funding Criteria: Materials Chemistry 1. Basic research of high quality and relevant to the AF Biology Physics 2. Unique or complementary, but non-duplicative—finds a “niche” Engineering Math 3. Leverages research in other agencies 4. Critical mass or team of collaborators with focused, multi-disciplinary research objectives Algal Oil: DOE and DARPA research application oriented; NSF funds mostly individual grants of smaller size that are not based on a coordinated, multi-disciplinary team approach; USDA interested in farming aquaculture; EPA interested in regulation. AFOSR niche is lipid biosynthesis via systems biology. AFOSR has collaborated with DOE-NREL since 2006 and coordinates research as member of emerging Algal Interagency Working Group. Biosolar Hydrogen: DOE and NSF fund mostly individual grants of smaller size that are not based on a coordinated, multi-disciplinary team approach. AFOSR niche is systems biology and bioengineering for enhanced H2 production. AFOSR has collaborated with DOE-NREL since 2003. Biofuel Cells: ONR funds only microbial fuel cell (MFC) research for dissolved nutrients in the marine sediment environment. AFOSR funds enzymatic and MFC research for solid substrates in terrestrial environments and coordinates research via ONR reviews and direct personal contact. Artificial Photosynthesis: This topic is biologically oriented and part of a 2009 AFOSR Initiative “Catalysts for Solar Fuels” with PMs Berman and Curcic, whose topics are chemically and physically oriented. To our knowledge there are no initiative counterparts at other agencies. BioResponse to Photo-electromagnetic Stimulation: Complementary to other funded research. DISTRIBUTION A: Approved for public release; distribution is unlimited. 29