Bacterial Periplasmic Binding Proteins as Biosensors in Liposomes

Heather Jordan
Heather JordanFounder and President um Atlantis Astrobiology Research Institute
Lab Meeting:   “Turning Houseflies into Fireflies” Szostak Lab   Howard Hughes Medical Institute, and Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114
Problem: ,[object Object],http://bioweb.wku.edu/courses/biol22000/2Bonds/ http://bioweb.wku.edu/pix/Pix.htm
Background:  Biosensors   ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Background:   E. coli  bPBPs ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Felder, C.B.,  et al.  (1999)  AAPS PharmSci.  1 (2). 1-20. www.botgard.ucla.edu /. ../b0567tx.html
Background:   E. coli  bPBPs ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Hinge   Mutated Residue   Bound Ligand De Lorimier  et al.   Protein Science.  11:2655–2675.
ABC Transport System: ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
    
 
Labeling with Acrylodan ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Emission:  500 nm Excitation:  390 nm
Background:  Biosensors   ,[object Object],[object Object],[object Object]
Background:  Biosensors   ,[object Object],[object Object],[object Object],http://www.darnellworks.com/a52/nr0007.htm
Binding Proteins of Interest 34.470 kD 28.460 kD 34.473 kD   40.775 kD    26.141 kD 17.822 kD   31.000 kD 24.988 kD   29.714 kD   57.536 kD   33.196   kD Protein Size L65C sbp Sulfate A234C rbp Ribose phoS malE hisJ mglB gltI/ybeJ glnH fhuD dppA araF Gene F126C Glutamate-Aspartate S164C (S197C) Phosphate D95C Maltose V163C Histidine H152C Glucose-Galactose Y163C Glutamine Iron D450C Dipeptide K301C, C64A Arabinose Mutations Binding Protein
Binding Proteins of Interest 37.696 kD 28.474 kD 35.832 kD   40.928 kD    59.239 kD 33.334 kD   31.000 kD 24.988 kD   29.714 kD   66.8982 kD   33.196   kD Protein Size L65C sbp Sulfate Functional A234C rbp Ribose Functional phoS malE hisJ mglB gltI/ybeJ glnH fhuD dppA araF Gene Functional Functional Functional Functional Expressed Cloned WT Cloned WT Purified 1 st  of double mutant Status F126C Glutamate-Aspartate S164C (A197C) Phosphate D95C Maltose V163C Histidine H152C Glucose-Galactose Y163C Glutamine E203C Iron D450C Dipeptide K301C, C64A Arabinose Mutations Binding Protein
phoS :  Cloning with pET100/TOPO ,[object Object],Digest Confirmation Gel Sequenced & Expressed ↓   PhoS:  S164C (A197C)
PhoS:   Mass Spectrophotometry ,[object Object],[object Object],38,832 D  
hisJ :  Cloning with pET100/TOPO ,[object Object],↓   Digest Confirmation Gel Sequenced & Expressed
HisJ Purification Process ,[object Object],[object Object],[object Object],[object Object],[object Object],50 kD
Affinity of HisJ:  Titrations ,[object Object],[object Object]
sbp :  Cloning with TOPO/pET100 ,[object Object],Digest Confirmation Gel Sequenced & Expressed ↓
Sbp Purification Process ,[object Object],[object Object],[object Object],[object Object],[object Object]
rbp :  Cloning with TOPO/pET100 ,[object Object],Digest Confirmation Gel Sequenced & Expressed ↓
Rbp Purification Process ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],
And the Others? More of the same… Sbp Rbp HisJ MglB MalE
What can be eliminated: ,[object Object],[object Object],[object Object],[object Object],[object Object]
SDS-PAGE
Still More Proteins… DppA:  Dipeptide Binding Protein (D450C) Digest Confirmation Gel Sequenced & Expressed ↓
DppA:  D450C Mutation ,[object Object],[object Object]
Still More Proteins… MalE:  Maltose Binding Protein (D95C) Digest Confirmation Gel Sequenced & Expressed ↓   ↓
Still More Proteins… MglB:  Glucose-Galactose Binding Protein (H152C) Digest Confirmation Gel Sequenced & Expressed ↓   ↓
Still More Proteins… YbeJ (GltI):   Glutamate-Aspartate Binding Protein (H152C) Digest Confirmation Gel Sequenced & Expressed ↓
Still More Proteins… GlnH:  Glutamine Binding Protein (Y163C) FhuD:  Fe 3+  Binding Protein
Future Plans ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
??Questions??
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Bacterial Periplasmic Binding Proteins as Biosensors in Liposomes

  • 1. Lab Meeting: “Turning Houseflies into Fireflies” Szostak Lab Howard Hughes Medical Institute, and Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114
  • 2.
  • 3.
  • 4.
  • 5.
  • 6.
  • 7.     
  • 9.
  • 10.
  • 11.
  • 12. Binding Proteins of Interest 34.470 kD 28.460 kD 34.473 kD 40.775 kD   26.141 kD 17.822 kD 31.000 kD 24.988 kD 29.714 kD  57.536 kD 33.196 kD Protein Size L65C sbp Sulfate A234C rbp Ribose phoS malE hisJ mglB gltI/ybeJ glnH fhuD dppA araF Gene F126C Glutamate-Aspartate S164C (S197C) Phosphate D95C Maltose V163C Histidine H152C Glucose-Galactose Y163C Glutamine Iron D450C Dipeptide K301C, C64A Arabinose Mutations Binding Protein
  • 13. Binding Proteins of Interest 37.696 kD 28.474 kD 35.832 kD 40.928 kD   59.239 kD 33.334 kD 31.000 kD 24.988 kD 29.714 kD  66.8982 kD 33.196 kD Protein Size L65C sbp Sulfate Functional A234C rbp Ribose Functional phoS malE hisJ mglB gltI/ybeJ glnH fhuD dppA araF Gene Functional Functional Functional Functional Expressed Cloned WT Cloned WT Purified 1 st of double mutant Status F126C Glutamate-Aspartate S164C (A197C) Phosphate D95C Maltose V163C Histidine H152C Glucose-Galactose Y163C Glutamine E203C Iron D450C Dipeptide K301C, C64A Arabinose Mutations Binding Protein
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19.
  • 20.
  • 21.
  • 22.
  • 23. And the Others? More of the same… Sbp Rbp HisJ MglB MalE
  • 24.
  • 26. Still More Proteins… DppA: Dipeptide Binding Protein (D450C) Digest Confirmation Gel Sequenced & Expressed ↓
  • 27.
  • 28. Still More Proteins… MalE: Maltose Binding Protein (D95C) Digest Confirmation Gel Sequenced & Expressed ↓ ↓
  • 29. Still More Proteins… MglB: Glucose-Galactose Binding Protein (H152C) Digest Confirmation Gel Sequenced & Expressed ↓ ↓
  • 30. Still More Proteins… YbeJ (GltI): Glutamate-Aspartate Binding Protein (H152C) Digest Confirmation Gel Sequenced & Expressed ↓
  • 31. Still More Proteins… GlnH: Glutamine Binding Protein (Y163C) FhuD: Fe 3+ Binding Protein
  • 32.
  • 33.