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them to have lost a lot of their RNA.
                Another piece of evidence for thermoreduction comes from the
Prokaryotes     genomes of prokaryotes:
can survive in
higher
                   • In eukaryotes, chromosomes are made of linear DNA.
temperatures
                   • In prokaryotes the genome is made of circular DNA.
because,
                   • Circular DNA is much less vulnerable to heat damage than
unlike
                      linear DNA, which starts to get 'split ends' at high
eukaryotes,
                      temperatures.
their DNA is in
a protective
circular           • Circular chromosomes are conspicuously absent from
configuration.        eukaryotes and their widespread incidence in prokaryotes
                      alone is best explained by the thermoreduction hypothesis.
                 For eukaryotes to maintain linear DNA genomes, they require a
                 special system for maintaining their ends:

                    •   An enzyme called telomerase, which has both a protein and
                        an RNA component, does this job.
                    •   Telomerase is common to all eukaryotes, suggesting it is
                        very ancient.
                    •   It seems unlikely that eukaryotes with their linear genomes,
                        and many RNAs, including telomerase, could have emerged
                        from the 'sauna' of life.
                    •   It is more likely that the organisms which first braved high
                        temperatures shed much of the evidence of their RNA world
                        ancestry along the way, as well as linear DNA genomes and
                        telomerase.

                    •   Modern prokaryotes appear to have a 'hot history,' even
                        though many now live at moderate or even cold
                        temperatures.
                 Clues to the origin of life in your own body

                 Evolutionary biologists have traditionally studied the simplest
                 organisms they can find in order to learn more about the origins of
                 life. But simple doesn't necessarily mean ancient, so we should not
                 restrict our search purely to simple organisms. All organisms have
                 been evolving for 3.5 billion years or so, and the idea that there is
                 some obscure bug that time forgot which resembles ancient life on
                 Earth is outdated.

                As Forterre's work shows, simplification has its merits, and it
                seems that bacteria have lost a lot of the molecular fossils of our
                ancient past. We know an enormous amount about the
Human cells,
                biochemistry of our own cells, and although there's layer upon
which are
                layer of complexity, hidden underneath it all are clues to the origins
eukaryotic,
                of the earliest cells. How ironic it is that human cells harbor as
may harbor
                many if not more secrets of the origins of life than the simple
secrets to the
                bacteria! It's no wonder that evolutionary biologists are as excited
origin of life.
                about the Human Genome Project as anyone else!

                 It is important to keep in mind that eukaryotic cells have continued
                 to evolve over time. While it is possible to uncover much about the
Were Bacteria the First Forms of Life on Earth?
learnmore links                               get involved   glossary   references   back to top


Life in ocean extremes
Discovery network provides pictures of some of the creatures that live in and around
the extreme environment of deep sea vents.
http://dsc.discovery.com/convergence/blueplanet/photo/photo.html

The Origin of Life on Earth
Learn more about the RNA world and the current and historical ideas on the origin of
life on Earth by reading this thought provoking article by Leslie Orgel of the Salk
Institute for Biological Studies.
http://www.geocities.com/CapeCanaveral/Lab/2948/orgel.html

The Tree of Life page
A fun, interactive site that lets you surf up and down "The Tree of Life."
http://phylogeny.arizona.edu/tree/phylogeny.html

Human genome project information
Explore this comprehensive site, sponsored by the U.S. Department of Energy's
Office of Science, for information about the U.S. and worldwide Human Genome
Project. Second link takes you to their Primer on Molecular Genetics to learn more
about DNA and sequencing.
http://www.ornl.gov/hgmis/
http://www.ornl.gov/sci/techresources/Human_Genome/publicat/primer/toc.html

Eukaryotic Origins
Astrobiology Magazine article examines endosymbiosis (how bacteria is engulfed).
http://www.astrobio.net/news/article243.html

Astrobiology
The astrobiology website for Australia and New Zealand.
http://www.aao.gov.au/local/www/jab/astrobiology/

Common ancestor
News story on Biomednet (requires free log-in) describing a presentation by Anthony
Poole about the common ancestor being more like an eukaryote, presented at the
annual conference of the Society for Molecular Biology and Evolution, July 2001.
http://news.bmn.com/news/story?day=010711&story=2


Further reading (science journals)
» Doolittle W.F. 2000. "The nature of the universal ancestor and the evolution of the
proteome." Current Opinion in Structural Biology 10:355-358.
» Forterre P., Philippe H. 1999. "Where is the root of the universal tree of life?"
BioEssays 21:871-879.
» Penny D., Poole A. 1999. "The nature of the last universal common ancestor."
Current Opinion in Genetics and Development 9:672-677.
» Poole A., Jeffares D., Penny D. 1999. "Early evolution: prokaryotes, the new kids
on the block." BioEssays 21:880-889.
» Ridley M. 2000. "The search for LUCA." Natural History 11:82-85.

  getinvolved links                              learn more    glossary   references   back to top
The RNA Society
Biology students and scientists can join this scientific society to share research
results and information about emerging concepts in RNA. Membership application is
available on-line. There is a sliding membership fee.
http://www.rnasociety.org

For teachers: origin of life lessons
Interactive lessons focus on origin of life studies. These lessons are intended for use
in any high school biology course but many can be used in middle school, junior
college or lower division university levels.
http://www.indiana.edu/~ensiweb/orig.fs.html
authorglossary                             learn more   get involved   references   back to top


Chromosome - A single length of DNA which contains many genes. Eukaryotes have
several different linear chromosomes in each cell, and each contains some of the
genes cells need for life (humans have 23). Prokaryotes usually have one circular
chromosome, which contains all their genes.

DNA - Deoxyribose nucleic acid (DNA) is built up of four types of units, adenine (A),
guanine (G), cytosine (C) and thymine (T), joined in a series. Genes are encoded by
the specific sequence of the DNA, and their products are usually proteins. For
example, the sequence ATG indicates the start point of a gene, and tells the cell that
the first amino acid in the protein is methionine.

DNA polymerases - A class of enzyme that synthesises DNA.

Enzyme - Enzymes speed up (catalyse) chemical reactions. Most enzymes are
proteins but a few are made from RNA.

Eukaryotes - Have cells with a nucleus that contains all the DNA. Eukaryotes
include plants, animals, fungi, amoeba, algae, and many other organisms.
Eukaryotes can be multicellular (many-celled) or single celled. Compare with
prokaryotes.

Genetic code - The language of genes. Three nucleotides together make a codon
which codes for an amino acid. For example GAG codes for the amino acid glutamine.
Ribosomes read the codons from an RNA copy of a gene, joining amino acids
together to make the protein encoded in that gene. The genetic code is the same for
all living things.

Genome - The collection of genes that make up an organism. These genes may be
on one
chromosome, or many.

Prokaryotes - Do not have a nucleus. There are two groups: bacteria and archaea,
which appear quite different from each other. All prokaryotes are single celled.

Protein - A chain of amino acids. The sequence of amino acids is specified by a
gene. Each protein is made by a ribosome, and it folds up into a specific shape that
is determined by the sequence of amino acids. The precise arrangement of amino
acids determines the properties of the protein. Some proteins are enzymes.

Ribosomes - Ribosomes are the cell's protein factories. Ribosomes read the genetic
code from the working RNA copies of genes, using these to synthesise the protein
encoded by the gene. Ribosomes have an RNA core, which is largely responsible for
protein production. The RNA core is stabilised by a protein scaffold.

RNA - Ribose nucleic acid (RNA) is similar to DNA. For a protein to be made from a
gene a working copy of the gene is made from RNA. The RNA is read by the
ribosome, which "translates" it into protein. Other RNA molecules are enzymes,
performing chemical reactions.

RNA world - A proposed stage early in the evolution of life in which RNA acted as
both genetic material and enzyme.
articlereferences                                          learn more     get involved   glossary    back to top


General References:

» Sidney Altman http://www.science.ca/scientists/scientistprofile.php?pID=3
» Tom Cech http://petunia.colorado.edu/projects.html
» Nobel Prize in Chemistry http://nobelprize.org/chemistry/laureates/1989/index.html
» Patrick Forterre is a leading scientist in France who has been studying eukaryotes and their role in the origin of
life http://www-archbac.u-psud.fr/LabHome/PForterre/ePF.html
» The University of Paris Sûd http://www.u-psud.fr/anglais.nsf/index.htm?OpenPage
» Human Genome Project http://www.ornl.gov/hgmis/

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Were bacteria first form

  • 1. them to have lost a lot of their RNA. Another piece of evidence for thermoreduction comes from the Prokaryotes genomes of prokaryotes: can survive in higher • In eukaryotes, chromosomes are made of linear DNA. temperatures • In prokaryotes the genome is made of circular DNA. because, • Circular DNA is much less vulnerable to heat damage than unlike linear DNA, which starts to get 'split ends' at high eukaryotes, temperatures. their DNA is in a protective circular • Circular chromosomes are conspicuously absent from configuration. eukaryotes and their widespread incidence in prokaryotes alone is best explained by the thermoreduction hypothesis. For eukaryotes to maintain linear DNA genomes, they require a special system for maintaining their ends: • An enzyme called telomerase, which has both a protein and an RNA component, does this job. • Telomerase is common to all eukaryotes, suggesting it is very ancient. • It seems unlikely that eukaryotes with their linear genomes, and many RNAs, including telomerase, could have emerged from the 'sauna' of life. • It is more likely that the organisms which first braved high temperatures shed much of the evidence of their RNA world ancestry along the way, as well as linear DNA genomes and telomerase. • Modern prokaryotes appear to have a 'hot history,' even though many now live at moderate or even cold temperatures. Clues to the origin of life in your own body Evolutionary biologists have traditionally studied the simplest organisms they can find in order to learn more about the origins of life. But simple doesn't necessarily mean ancient, so we should not restrict our search purely to simple organisms. All organisms have been evolving for 3.5 billion years or so, and the idea that there is some obscure bug that time forgot which resembles ancient life on Earth is outdated. As Forterre's work shows, simplification has its merits, and it seems that bacteria have lost a lot of the molecular fossils of our ancient past. We know an enormous amount about the Human cells, biochemistry of our own cells, and although there's layer upon which are layer of complexity, hidden underneath it all are clues to the origins eukaryotic, of the earliest cells. How ironic it is that human cells harbor as may harbor many if not more secrets of the origins of life than the simple secrets to the bacteria! It's no wonder that evolutionary biologists are as excited origin of life. about the Human Genome Project as anyone else! It is important to keep in mind that eukaryotic cells have continued to evolve over time. While it is possible to uncover much about the
  • 2. Were Bacteria the First Forms of Life on Earth?
  • 3. learnmore links get involved glossary references back to top Life in ocean extremes Discovery network provides pictures of some of the creatures that live in and around the extreme environment of deep sea vents. http://dsc.discovery.com/convergence/blueplanet/photo/photo.html The Origin of Life on Earth Learn more about the RNA world and the current and historical ideas on the origin of life on Earth by reading this thought provoking article by Leslie Orgel of the Salk Institute for Biological Studies. http://www.geocities.com/CapeCanaveral/Lab/2948/orgel.html The Tree of Life page A fun, interactive site that lets you surf up and down "The Tree of Life." http://phylogeny.arizona.edu/tree/phylogeny.html Human genome project information Explore this comprehensive site, sponsored by the U.S. Department of Energy's Office of Science, for information about the U.S. and worldwide Human Genome Project. Second link takes you to their Primer on Molecular Genetics to learn more about DNA and sequencing. http://www.ornl.gov/hgmis/ http://www.ornl.gov/sci/techresources/Human_Genome/publicat/primer/toc.html Eukaryotic Origins Astrobiology Magazine article examines endosymbiosis (how bacteria is engulfed). http://www.astrobio.net/news/article243.html Astrobiology The astrobiology website for Australia and New Zealand. http://www.aao.gov.au/local/www/jab/astrobiology/ Common ancestor News story on Biomednet (requires free log-in) describing a presentation by Anthony Poole about the common ancestor being more like an eukaryote, presented at the annual conference of the Society for Molecular Biology and Evolution, July 2001. http://news.bmn.com/news/story?day=010711&story=2 Further reading (science journals) » Doolittle W.F. 2000. "The nature of the universal ancestor and the evolution of the proteome." Current Opinion in Structural Biology 10:355-358. » Forterre P., Philippe H. 1999. "Where is the root of the universal tree of life?" BioEssays 21:871-879. » Penny D., Poole A. 1999. "The nature of the last universal common ancestor." Current Opinion in Genetics and Development 9:672-677. » Poole A., Jeffares D., Penny D. 1999. "Early evolution: prokaryotes, the new kids on the block." BioEssays 21:880-889. » Ridley M. 2000. "The search for LUCA." Natural History 11:82-85. getinvolved links learn more glossary references back to top
  • 4. The RNA Society Biology students and scientists can join this scientific society to share research results and information about emerging concepts in RNA. Membership application is available on-line. There is a sliding membership fee. http://www.rnasociety.org For teachers: origin of life lessons Interactive lessons focus on origin of life studies. These lessons are intended for use in any high school biology course but many can be used in middle school, junior college or lower division university levels. http://www.indiana.edu/~ensiweb/orig.fs.html
  • 5. authorglossary learn more get involved references back to top Chromosome - A single length of DNA which contains many genes. Eukaryotes have several different linear chromosomes in each cell, and each contains some of the genes cells need for life (humans have 23). Prokaryotes usually have one circular chromosome, which contains all their genes. DNA - Deoxyribose nucleic acid (DNA) is built up of four types of units, adenine (A), guanine (G), cytosine (C) and thymine (T), joined in a series. Genes are encoded by the specific sequence of the DNA, and their products are usually proteins. For example, the sequence ATG indicates the start point of a gene, and tells the cell that the first amino acid in the protein is methionine. DNA polymerases - A class of enzyme that synthesises DNA. Enzyme - Enzymes speed up (catalyse) chemical reactions. Most enzymes are proteins but a few are made from RNA. Eukaryotes - Have cells with a nucleus that contains all the DNA. Eukaryotes include plants, animals, fungi, amoeba, algae, and many other organisms. Eukaryotes can be multicellular (many-celled) or single celled. Compare with prokaryotes. Genetic code - The language of genes. Three nucleotides together make a codon which codes for an amino acid. For example GAG codes for the amino acid glutamine. Ribosomes read the codons from an RNA copy of a gene, joining amino acids together to make the protein encoded in that gene. The genetic code is the same for all living things. Genome - The collection of genes that make up an organism. These genes may be on one chromosome, or many. Prokaryotes - Do not have a nucleus. There are two groups: bacteria and archaea, which appear quite different from each other. All prokaryotes are single celled. Protein - A chain of amino acids. The sequence of amino acids is specified by a gene. Each protein is made by a ribosome, and it folds up into a specific shape that is determined by the sequence of amino acids. The precise arrangement of amino acids determines the properties of the protein. Some proteins are enzymes. Ribosomes - Ribosomes are the cell's protein factories. Ribosomes read the genetic code from the working RNA copies of genes, using these to synthesise the protein encoded by the gene. Ribosomes have an RNA core, which is largely responsible for protein production. The RNA core is stabilised by a protein scaffold. RNA - Ribose nucleic acid (RNA) is similar to DNA. For a protein to be made from a gene a working copy of the gene is made from RNA. The RNA is read by the ribosome, which "translates" it into protein. Other RNA molecules are enzymes, performing chemical reactions. RNA world - A proposed stage early in the evolution of life in which RNA acted as both genetic material and enzyme.
  • 6. articlereferences learn more get involved glossary back to top General References: » Sidney Altman http://www.science.ca/scientists/scientistprofile.php?pID=3 » Tom Cech http://petunia.colorado.edu/projects.html » Nobel Prize in Chemistry http://nobelprize.org/chemistry/laureates/1989/index.html » Patrick Forterre is a leading scientist in France who has been studying eukaryotes and their role in the origin of life http://www-archbac.u-psud.fr/LabHome/PForterre/ePF.html » The University of Paris Sûd http://www.u-psud.fr/anglais.nsf/index.htm?OpenPage » Human Genome Project http://www.ornl.gov/hgmis/