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Department of Biochemistry, Nepalgunj Medical College, Chisapani, Nepal
Saturday,
September 3,
2016
Rajesh Chaudhary
1
Biological oxidation-reduction
 Biological oxidation in photosynthetic Vs non-
photosynthetic organisms.
 Work can be accomplished by Electromotive Force (EMF).
Saturday,
September 3,
2016
Rajesh Chaudhary
2
So, what is Electromotive force (EMF)?
Biological oxidation-reduction
 Oxidation: removal of electron
 Reduction: gain of electron
Fe2+ Fe3+
 LEO GER: Loss of electron (Oxidation) & Gain of electron
(Reduction)
 Flow of electron is DOWNHILL. (From higher to lower
electrochemical potential)
Saturday,
September 3,
2016
Rajesh Chaudhary
3
e-
Oxidation-reduction can be described as
Half-Reactions
Saturday,
September 3,
2016
Rajesh Chaudhary
4
Biological oxidations often
involve dehydrogenation
Saturday,
September 3,
2016
Rajesh Chaudhary
5
Biological oxidations often involve
dehydrogenation
Saturday,
September 3,
2016
Rajesh Chaudhary
6
 The order of increasing electronegativity is
H<C<S<N<O.
Alkane Alkene
NOTE: With each formal loss of “owned” electron, a carbon
atom goes into oxidation though there is no oxygen involved.
to
Electron transfer occurs in 4 different
ways
Saturday,
September 3,
2016
Rajesh Chaudhary
7
 1. Directly as electrons.
 2. As hydrogen atoms.
 3. As hydride ions.
 4. Through direct combination with oxygen.
The neutral term “reducing equivalent” is commonly used to designate a
single electron equivalent participating in an oxidation-reduction reaction.
Redox potential and Free energy
 Is a measure of its affinity for electrons
 In O/R reactions the free energy change is proportional to the
tendency of reactants to donate / accept e-s known as
Standard Reduction Potential denoted by Eo
’ (for biological
systems)
Saturday,
September 3,
2016
Rajesh Chaudhary
8
Enzymes
Used as a catalyst
Classification of enzymes: 6 classes
1. Oxido-reductase (E.g Alcohol dehydrogenase)
2. Transferase (E.g. Aminotransferase / Transaminase)
3. Hydrolase
4. Lyases (E.g. Decarboxylase)
5. Isomerase (E.g. Epimerase, Racemases, Mutases)
6. Ligases (e.g Pyruvate carboxylase)
Saturday,
September 3,
2016
Rajesh Chaudhary
9
Oxidation-reduction enzymes
 Enzyme responsible: OXIDO-REDUCTASE
 In fact, there are seven different types of OXIDO-
REDUCTASE.
Saturday,
September 3,
2016
Rajesh Chaudhary
10
Oxidases Dehydrogenases Hydroperoxidases Oxygenases
1. Oxidase
 Use oxygen as hydrogen acceptor
 Reaction product: H2O, H2O2
 Some contains copper
 Example: Cytochrome oxidase / Cytochrome a3
 Other oxidases are FLAVOPROTEIN
11
FAD FMN
L-amino acid oxidase, Xanthin oxidase, aldehyde dehydrogenase
1. Oxidase
1. L-amino oxidase: FMN-linked (kidney)
2. Xanthin oxidase: milk, small intestine, kidney,
and liver.
3. Aldehyde dehydrogenase: FAD-linked
(mammalian liver)
Saturday,
September 3,
2016
Rajesh Chaudhary
12
2. Dehydrogenase
 Doesn’t use oxygen as hydrogen acceptor
 Contains large no. of enzymes in this family
 Nicotinamide-dependent
 NAD-linked dehydrogenase
 NADP-linked dehydrogenase
 2 major functions:
1. Transfer of hydrogen from one substrate to another
2. Transfer of electron in respiratory chain from substrate to oxygen.
Saturday,
September 3,
2016
Rajesh Chaudhary
13
Differences between Aerobic dehydrogenase
and Anaerobic dehydrogenase
Saturday,
September 3,
2016
Rajesh Chaudhary
14
Aerobic dehydrogenase Anaerobic dehydrogenase
1. Can react directly with O2 1. Cannot react directly with molecular O2
2. Transfers hydrogen / electrons to Fp
which is autooxidisable.
2. Transfers hydrogen / electron to NAD+
or Fp which is oxidized in ETC.
3. H2O2 is produced which is catabolized
by catalase.
3. H2O2 is never produced. NADH + H+ or
Fb.H2 are produced.
4. ATP is never produced. 4. ATP is produced.
Mechanism of oxidation and reduction
of nicotinamide coenzyme
Saturday,
September 3,
2016
Rajesh Chaudhary
15
Other dehydrogenases
Depends on Riboflavin.
Similar to FMN and FAD.
Examples:
NADH-dehydrogenase.
Succinate dehydrogenase
Acyl-CoA dehydrogenase
Mitochondrial glycerol-3-phosphate dehydrogenase.
Saturday,
September 3,
2016
Rajesh Chaudhary
16
Except cytochrome oxidase, other types of cytochromes are considered as dehydrogenases.
3. Hydroperoxidase
Use hydrogen peroxide / organic peroxide as
substrate
2 types of enzymes
Peroxidase
Catalase
Saturday,
September 3,
2016
Rajesh Chaudhary
17
Hydrogen peroxide protects our body from various harmful
peroxidases !
Hydroperoxidase
Accumulation of peroxidases  generation of free
radicals  leads to atherosclerosis, cancer.
Peroxidases
Originally considered plant enzyme
(Milk, Leukocytes, platelets and in tissues involved in Eicosanoid
metabolism)
Reduces peroxides using various electron acceptor.
Saturday,
September 3,
2016
Rajesh Chaudhary
18
Peroxides and Catalase
H2O2 + AH2
peroxidase
2H2O + A
2H202
catalase
2H20 + 02
 Catalase
H202 as electron donor and acceptor
Sites: blood, bone marrow, mucus membrane, kidney, liver.
Saturday,
September 3,
2016
Rajesh Chaudhary
19
Oxygenase
 Catalyze the incorporation of O2 into substrates in 2 steps
1st. Oxygen is bound to the active site of the enzyme
2nd. Bound O2 is reduced or transferred to the substrate
Consists of two sets of enzymes
1. Dioxygenases : incorporate both atoms of oxygen into the
substrate ; A + O2  AO2
2. Monooxygenases : incorporates one atom of oxygen into the
substrate & the other is reduced to water
A – H + O2 + ZH2  A – OH + H2O + Z
Saturday,
September 3,
2016
Rajesh Chaudhary
20
Saturday,
September 3,
2016
Rajesh Chaudhary
21

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Biological oxidation reduction

  • 1. Department of Biochemistry, Nepalgunj Medical College, Chisapani, Nepal Saturday, September 3, 2016 Rajesh Chaudhary 1
  • 2. Biological oxidation-reduction  Biological oxidation in photosynthetic Vs non- photosynthetic organisms.  Work can be accomplished by Electromotive Force (EMF). Saturday, September 3, 2016 Rajesh Chaudhary 2 So, what is Electromotive force (EMF)?
  • 3. Biological oxidation-reduction  Oxidation: removal of electron  Reduction: gain of electron Fe2+ Fe3+  LEO GER: Loss of electron (Oxidation) & Gain of electron (Reduction)  Flow of electron is DOWNHILL. (From higher to lower electrochemical potential) Saturday, September 3, 2016 Rajesh Chaudhary 3 e-
  • 4. Oxidation-reduction can be described as Half-Reactions Saturday, September 3, 2016 Rajesh Chaudhary 4
  • 5. Biological oxidations often involve dehydrogenation Saturday, September 3, 2016 Rajesh Chaudhary 5
  • 6. Biological oxidations often involve dehydrogenation Saturday, September 3, 2016 Rajesh Chaudhary 6  The order of increasing electronegativity is H<C<S<N<O. Alkane Alkene NOTE: With each formal loss of “owned” electron, a carbon atom goes into oxidation though there is no oxygen involved. to
  • 7. Electron transfer occurs in 4 different ways Saturday, September 3, 2016 Rajesh Chaudhary 7  1. Directly as electrons.  2. As hydrogen atoms.  3. As hydride ions.  4. Through direct combination with oxygen. The neutral term “reducing equivalent” is commonly used to designate a single electron equivalent participating in an oxidation-reduction reaction.
  • 8. Redox potential and Free energy  Is a measure of its affinity for electrons  In O/R reactions the free energy change is proportional to the tendency of reactants to donate / accept e-s known as Standard Reduction Potential denoted by Eo ’ (for biological systems) Saturday, September 3, 2016 Rajesh Chaudhary 8
  • 9. Enzymes Used as a catalyst Classification of enzymes: 6 classes 1. Oxido-reductase (E.g Alcohol dehydrogenase) 2. Transferase (E.g. Aminotransferase / Transaminase) 3. Hydrolase 4. Lyases (E.g. Decarboxylase) 5. Isomerase (E.g. Epimerase, Racemases, Mutases) 6. Ligases (e.g Pyruvate carboxylase) Saturday, September 3, 2016 Rajesh Chaudhary 9
  • 10. Oxidation-reduction enzymes  Enzyme responsible: OXIDO-REDUCTASE  In fact, there are seven different types of OXIDO- REDUCTASE. Saturday, September 3, 2016 Rajesh Chaudhary 10 Oxidases Dehydrogenases Hydroperoxidases Oxygenases
  • 11. 1. Oxidase  Use oxygen as hydrogen acceptor  Reaction product: H2O, H2O2  Some contains copper  Example: Cytochrome oxidase / Cytochrome a3  Other oxidases are FLAVOPROTEIN 11 FAD FMN L-amino acid oxidase, Xanthin oxidase, aldehyde dehydrogenase
  • 12. 1. Oxidase 1. L-amino oxidase: FMN-linked (kidney) 2. Xanthin oxidase: milk, small intestine, kidney, and liver. 3. Aldehyde dehydrogenase: FAD-linked (mammalian liver) Saturday, September 3, 2016 Rajesh Chaudhary 12
  • 13. 2. Dehydrogenase  Doesn’t use oxygen as hydrogen acceptor  Contains large no. of enzymes in this family  Nicotinamide-dependent  NAD-linked dehydrogenase  NADP-linked dehydrogenase  2 major functions: 1. Transfer of hydrogen from one substrate to another 2. Transfer of electron in respiratory chain from substrate to oxygen. Saturday, September 3, 2016 Rajesh Chaudhary 13
  • 14. Differences between Aerobic dehydrogenase and Anaerobic dehydrogenase Saturday, September 3, 2016 Rajesh Chaudhary 14 Aerobic dehydrogenase Anaerobic dehydrogenase 1. Can react directly with O2 1. Cannot react directly with molecular O2 2. Transfers hydrogen / electrons to Fp which is autooxidisable. 2. Transfers hydrogen / electron to NAD+ or Fp which is oxidized in ETC. 3. H2O2 is produced which is catabolized by catalase. 3. H2O2 is never produced. NADH + H+ or Fb.H2 are produced. 4. ATP is never produced. 4. ATP is produced.
  • 15. Mechanism of oxidation and reduction of nicotinamide coenzyme Saturday, September 3, 2016 Rajesh Chaudhary 15
  • 16. Other dehydrogenases Depends on Riboflavin. Similar to FMN and FAD. Examples: NADH-dehydrogenase. Succinate dehydrogenase Acyl-CoA dehydrogenase Mitochondrial glycerol-3-phosphate dehydrogenase. Saturday, September 3, 2016 Rajesh Chaudhary 16 Except cytochrome oxidase, other types of cytochromes are considered as dehydrogenases.
  • 17. 3. Hydroperoxidase Use hydrogen peroxide / organic peroxide as substrate 2 types of enzymes Peroxidase Catalase Saturday, September 3, 2016 Rajesh Chaudhary 17 Hydrogen peroxide protects our body from various harmful peroxidases !
  • 18. Hydroperoxidase Accumulation of peroxidases  generation of free radicals  leads to atherosclerosis, cancer. Peroxidases Originally considered plant enzyme (Milk, Leukocytes, platelets and in tissues involved in Eicosanoid metabolism) Reduces peroxides using various electron acceptor. Saturday, September 3, 2016 Rajesh Chaudhary 18
  • 19. Peroxides and Catalase H2O2 + AH2 peroxidase 2H2O + A 2H202 catalase 2H20 + 02  Catalase H202 as electron donor and acceptor Sites: blood, bone marrow, mucus membrane, kidney, liver. Saturday, September 3, 2016 Rajesh Chaudhary 19
  • 20. Oxygenase  Catalyze the incorporation of O2 into substrates in 2 steps 1st. Oxygen is bound to the active site of the enzyme 2nd. Bound O2 is reduced or transferred to the substrate Consists of two sets of enzymes 1. Dioxygenases : incorporate both atoms of oxygen into the substrate ; A + O2  AO2 2. Monooxygenases : incorporates one atom of oxygen into the substrate & the other is reduced to water A – H + O2 + ZH2  A – OH + H2O + Z Saturday, September 3, 2016 Rajesh Chaudhary 20