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IoT. Internet of the things.
The era of Small Size
slides and 4M microscopes
Prof.Dr.O.Ferrer-Roca.
 XVIII WINTER COURSE 2010.
Tfe. Canary Islands.Spain

IoT. Internet of the Things
 Identifying,

scheduling,
controlling & evaluating
devices through Internet.

COW
Computer on wheels

Global infrastructure to link physical &
virtual objects, exploiting data capture
and massive communications.

Object-ID
Ideal for Sensors & Telemedicine applications connected to PoCs
(points of care, points of contact) since their connectivity is based on
federated services & independent applications.
IoT in medical devices.


Brings full autonomy in : data
capture, event transfer, network
connectivity & interoperability.



EC proposed on VI-2009 
14 lines to foster in the EU
«Internet of the things».
The essential one is
Standardization & Security.



The EC stressed the priority in private data protection with technologies
such as inteligent straps or sticks (RFID) and give their recomendations
( IP/09/740,IP/09/571)
http://ec.europa.eu/information_society/policy/rfid/index_en.htm

IoT in medical devices


The EC is waching
the IPs addresses
not to run out .

IPv6 is essential
IEEE-1073-x

IoT in medical devices.
IEEE-11073.3.2 MIB or Medical Information Bus
PoC –PnP standard
Auto-Tracking

http://www.ieee-isto.org/index.html

Nivel Integración AVERPI
1.Audio
2.Video
3.Equipment
4.Room environment
5.PACS
6.Information Systems
http://catai.net/blog//2009/09/patoinformatica-osna-one-step-nucleic-acid-amplification/

IoT in medical devices.
Automatic processing
 Automatic sectioning
 Automatic fixing
 Automatic staining

IoT. Internet of the Things



OUTSOURCING pHealth
Health Care Quality
Health 2.0
Web 2.0

Health 3.0
Web 3.0

HCQ

HCQ

CLOUD

Health 4.0
Web 4.0

Social, Semantic, Service Web

ISO 13485
ISO27k

Seguridad
Health 4.0
The situation SSVS & 4M








SSVS technique the slide is digitized
at low microscopic power (4x).
Digitization with a high resolution
camera at the super-optical resolution
Stored in JPEG2000 format
maintaining diagnostic quality of
original slides. The resulting digital
image is 100 times smaller than VS,
easy to transmit and store .
In SSVS the zoom-in and the zoom-out
is handled by software. To focus low
power images is also solved with the
ZF-Zoom Focus (©-Ferrer-Roca)
technique.
Due to chip miniaturization
microscopes can be built on hald-held
devices. This is the case of the 4M or
Multi-Modal Miniature Microscopes
of less than two centimeters of
diameter using CMOS chips but the
forthcoming mobile phones provide
cameras up to 12 megapixels capable
to be used as dermatoscopes or 4M.

http://project.vodafone-us.com/winners-2009-cellscope.html
Material & Methods
Images coming from an average
quality Olympus BH-2 microscope
were captured with a high
resolution CCD camera.
 It was an AVT-Oscar F-810C
fireware IEEE1394 camera, with a
CCD 2/3” Sony sensor of 8
Megapixels-Mpx (3288x2470)
producing images of 3272x2469,
12 bits/pixel.
 The monochip was a colour
mosaic (R-G x G-B) with 2x2 pixel
sensitivity. Signal to noise ratio
(SNR) was 36,19dB. Noise floor
of CCD cameras of 12 bits
dynamic range is 2.4x10 -4 ; SNR=
- 10 log10 Fnoise= 36,19dB.

PARAMETERS-I
Projection magnification
onChip (PMoC)
 Each field of view (FOV) was
taken through a SPlan 4x
objective (Obj), 0.13 NA
(Numeric Aperture), using a
relay tube lens NFK 2.5x LD of
125 on the MTV-3 tube with a
0.3x lens that produce a total
projection magnification
onChip - PMoC of 3x
( 4*2.5*0.3). Exact
magnification was checked
with a calibration slide of 1 mm
in 10μm marks from Graticules
LTD, England.
 Each region of interest (ROI)
was scanned with a 0.46 NA
SPlan 20x objective at a PMoC
of 15x (20*2.5*0.3).


FOV = 3x
PMoC
ROI = 15x
PARAMETERS-II




Overall Magnification (OM) lenses (Obj *Oc)
and the distance (D) over which the image is
projected.
Digital images
The Digital resolution (DR) effective pixel
size (Epx) of the sensor divided by the total
projection magnification onChip. Epx μm /
PMoC. =sampling density.

Visual magnification (VM) through a 10x
wide field ocular (Oc) in a standardized
projection of 250 mm minimum distance for
20/20 eyes, considering the ¼ mm eye
resolution.
FOV scan objective = 40x , ROIs objective= 200x.


Total Screen magnification (SM).
Relationship between the size of Screen pixel
and the CCD pixel= Spx/CCDpx
1:1 zoom = (264μm/2.7μm = 97.77), near 100x.
The digital zoom-in and zoom-out magnification
factors depend of the JPEG2000 tile format.




Useful magnification (UM) ranged from
500*NA up to 1000*NA.
RESULTS-1
OBJ.

PMoC
3x

OR
μm
2.12

ST
μm/px
1

RGB-demosaic
μm/px
3

RAW
μm/px
1

RAW-demosaic
μm/px
2

4x
20x

15x

0.55

1/4

1/2

1/5

1/3

40x*

30x

0.29

1/8

1/4

1/10

1/5

60x*

45x

0.29

1/8

1/5

1/15

1/9

100x*

75x

0.20

1 /12

1/10

1/30

1/15

DIGITAL RESOLUTION. Compared original demosaicing RGB 8:1 images, with
black and white original RAW images and demosaicing 4:1color displayed RAW
images.
 PMoC= Projection Magnification on the Chip. OR= Microscopic Optical resolution.
 ST= Sampling density according to Shannon theory.
 *60x and 100x are not tested in the paper. 40x is tested but not used in the SSVS.

RESULTS-2
Obj(NA)

VM

Low UM
500xNA

High UM
1000xNA

4 x(0.13).

40x

65x

130x

20x(0.46).

200x

250x

40x(0.95)*

400x

60x(0.95)*
100x(1.4)*

CCD
PMoC

Zoom-out
(fingerprint)

1:1

Zoomin

3x

9x

294x

587x

460x

15x

46x

1467x

2933x

475x

950x

30x

92x

2933x

5800x

600x

475x

950x

45x

nt

nt

nt

1000x

700x

1400x

75x

nt

nt

nt

Analog Visual & Useful magnification (in grey) versus digital onChip &
onScreen magnification (in white) RAW demosaicing images.
 VM=Visual magnification; UM= Useful magnification range.

(*)40x included for comparison purposes not used in SSVS. (nt)= not tested.

RESULTS-3



Non linear ACE or adaptive contrast enhancement curve. Acting as
an inverse normalized optical modulation transfer function (MTF,
see http://www.microscopyu.com/articles/optics/mtfintro.html )
correcting optical coherence factor (OCF) or relationship between
NA of detector (CCD) and the objective γ= NAccd/NAobj.
RESULTS-3

Figure 1. C. FOV onScreen Zoomin SM 640x. System: OR=2.12 μm
and DR=3 μm /px (one third of the
Shannon theory).
 D. ROI onScreen . Zoom-in SM
3200x showing a tridimensional
papillary structure. System: OR=
0.55μm OR and DR= 1 μm /2px
(half of the Shannon theory).


Figure 2. ROI onScreen SSVSRAW images. System: OR=0.55μm
and DR=1 μm /3px (near to
Shannon sampling theory). The rule
on the top right is 10 μm.
 A- ROI onScreen . Zoom-in of the
cytology of figure 1. SM 2933x. On
the left corner SM 8799x showing
the pixelated nuclear details of the
empty magnification.
 B. ROI onScreen . Zoom-in of the
surgical specimen of figure 2. SM
2933x.


C- SSVS-FOV-RGB. SM 640x

A-SSVS-ROI-RAW. SM:2933x

D- SSVS-ROI-RGB. SM 3200x

B- SSVS-ROI-RAW.SM:2933x
CONCLUSIONS
1. Projection magnification onChip (PMoC) is essential to
evaluate the system sampling capabilities, the so-called
DR o digital resolution that influenced visibility and digital
image quality with or without computer assisted
techniques.
2. Differences OnScreen of RAW /RGB images were related
to higher DR and the contrast enhancement & light
gathering provided by superresolution algorithm on the
RAW images.
3. That SSVS are ideal for hand-held microscopes, 4M or
even mobile phones with ad-on capture systems
ION
NT

OU T E
KY
A N UR A T
T H YO
 catai@teide.net
R
FO
 www.catai.net/blog


www.teide.net/catai

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IoT Medical Devices Connected Healthcare

  • 1. IoT. Internet of the things. The era of Small Size slides and 4M microscopes Prof.Dr.O.Ferrer-Roca.  XVIII WINTER COURSE 2010. Tfe. Canary Islands.Spain 
  • 2. IoT. Internet of the Things  Identifying, scheduling, controlling & evaluating devices through Internet. COW Computer on wheels Global infrastructure to link physical & virtual objects, exploiting data capture and massive communications. Object-ID Ideal for Sensors & Telemedicine applications connected to PoCs (points of care, points of contact) since their connectivity is based on federated services & independent applications.
  • 3. IoT in medical devices.  Brings full autonomy in : data capture, event transfer, network connectivity & interoperability.  EC proposed on VI-2009  14 lines to foster in the EU «Internet of the things». The essential one is Standardization & Security.  The EC stressed the priority in private data protection with technologies such as inteligent straps or sticks (RFID) and give their recomendations ( IP/09/740,IP/09/571)
  • 4. http://ec.europa.eu/information_society/policy/rfid/index_en.htm IoT in medical devices  The EC is waching the IPs addresses not to run out . IPv6 is essential
  • 5. IEEE-1073-x IoT in medical devices. IEEE-11073.3.2 MIB or Medical Information Bus PoC –PnP standard Auto-Tracking http://www.ieee-isto.org/index.html Nivel Integración AVERPI 1.Audio 2.Video 3.Equipment 4.Room environment 5.PACS 6.Information Systems
  • 6. http://catai.net/blog//2009/09/patoinformatica-osna-one-step-nucleic-acid-amplification/ IoT in medical devices. Automatic processing  Automatic sectioning  Automatic fixing  Automatic staining 
  • 7. IoT. Internet of the Things  OUTSOURCING pHealth
  • 8. Health Care Quality Health 2.0 Web 2.0 Health 3.0 Web 3.0 HCQ HCQ CLOUD Health 4.0 Web 4.0 Social, Semantic, Service Web ISO 13485 ISO27k Seguridad
  • 10. The situation SSVS & 4M      SSVS technique the slide is digitized at low microscopic power (4x). Digitization with a high resolution camera at the super-optical resolution Stored in JPEG2000 format maintaining diagnostic quality of original slides. The resulting digital image is 100 times smaller than VS, easy to transmit and store . In SSVS the zoom-in and the zoom-out is handled by software. To focus low power images is also solved with the ZF-Zoom Focus (©-Ferrer-Roca) technique. Due to chip miniaturization microscopes can be built on hald-held devices. This is the case of the 4M or Multi-Modal Miniature Microscopes of less than two centimeters of diameter using CMOS chips but the forthcoming mobile phones provide cameras up to 12 megapixels capable to be used as dermatoscopes or 4M. http://project.vodafone-us.com/winners-2009-cellscope.html
  • 11. Material & Methods Images coming from an average quality Olympus BH-2 microscope were captured with a high resolution CCD camera.  It was an AVT-Oscar F-810C fireware IEEE1394 camera, with a CCD 2/3” Sony sensor of 8 Megapixels-Mpx (3288x2470) producing images of 3272x2469, 12 bits/pixel.  The monochip was a colour mosaic (R-G x G-B) with 2x2 pixel sensitivity. Signal to noise ratio (SNR) was 36,19dB. Noise floor of CCD cameras of 12 bits dynamic range is 2.4x10 -4 ; SNR= - 10 log10 Fnoise= 36,19dB. 
  • 12. PARAMETERS-I Projection magnification onChip (PMoC)  Each field of view (FOV) was taken through a SPlan 4x objective (Obj), 0.13 NA (Numeric Aperture), using a relay tube lens NFK 2.5x LD of 125 on the MTV-3 tube with a 0.3x lens that produce a total projection magnification onChip - PMoC of 3x ( 4*2.5*0.3). Exact magnification was checked with a calibration slide of 1 mm in 10μm marks from Graticules LTD, England.  Each region of interest (ROI) was scanned with a 0.46 NA SPlan 20x objective at a PMoC of 15x (20*2.5*0.3).  FOV = 3x PMoC ROI = 15x
  • 13. PARAMETERS-II   Overall Magnification (OM) lenses (Obj *Oc) and the distance (D) over which the image is projected. Digital images The Digital resolution (DR) effective pixel size (Epx) of the sensor divided by the total projection magnification onChip. Epx μm / PMoC. =sampling density. Visual magnification (VM) through a 10x wide field ocular (Oc) in a standardized projection of 250 mm minimum distance for 20/20 eyes, considering the ¼ mm eye resolution. FOV scan objective = 40x , ROIs objective= 200x.  Total Screen magnification (SM). Relationship between the size of Screen pixel and the CCD pixel= Spx/CCDpx 1:1 zoom = (264μm/2.7μm = 97.77), near 100x. The digital zoom-in and zoom-out magnification factors depend of the JPEG2000 tile format.   Useful magnification (UM) ranged from 500*NA up to 1000*NA.
  • 14. RESULTS-1 OBJ. PMoC 3x OR μm 2.12 ST μm/px 1 RGB-demosaic μm/px 3 RAW μm/px 1 RAW-demosaic μm/px 2 4x 20x 15x 0.55 1/4 1/2 1/5 1/3 40x* 30x 0.29 1/8 1/4 1/10 1/5 60x* 45x 0.29 1/8 1/5 1/15 1/9 100x* 75x 0.20 1 /12 1/10 1/30 1/15 DIGITAL RESOLUTION. Compared original demosaicing RGB 8:1 images, with black and white original RAW images and demosaicing 4:1color displayed RAW images.  PMoC= Projection Magnification on the Chip. OR= Microscopic Optical resolution.  ST= Sampling density according to Shannon theory.  *60x and 100x are not tested in the paper. 40x is tested but not used in the SSVS. 
  • 15. RESULTS-2 Obj(NA) VM Low UM 500xNA High UM 1000xNA 4 x(0.13). 40x 65x 130x 20x(0.46). 200x 250x 40x(0.95)* 400x 60x(0.95)* 100x(1.4)* CCD PMoC Zoom-out (fingerprint) 1:1 Zoomin 3x 9x 294x 587x 460x 15x 46x 1467x 2933x 475x 950x 30x 92x 2933x 5800x 600x 475x 950x 45x nt nt nt 1000x 700x 1400x 75x nt nt nt Analog Visual & Useful magnification (in grey) versus digital onChip & onScreen magnification (in white) RAW demosaicing images.  VM=Visual magnification; UM= Useful magnification range.  (*)40x included for comparison purposes not used in SSVS. (nt)= not tested. 
  • 16. RESULTS-3  Non linear ACE or adaptive contrast enhancement curve. Acting as an inverse normalized optical modulation transfer function (MTF, see http://www.microscopyu.com/articles/optics/mtfintro.html ) correcting optical coherence factor (OCF) or relationship between NA of detector (CCD) and the objective γ= NAccd/NAobj.
  • 17. RESULTS-3 Figure 1. C. FOV onScreen Zoomin SM 640x. System: OR=2.12 μm and DR=3 μm /px (one third of the Shannon theory).  D. ROI onScreen . Zoom-in SM 3200x showing a tridimensional papillary structure. System: OR= 0.55μm OR and DR= 1 μm /2px (half of the Shannon theory).  Figure 2. ROI onScreen SSVSRAW images. System: OR=0.55μm and DR=1 μm /3px (near to Shannon sampling theory). The rule on the top right is 10 μm.  A- ROI onScreen . Zoom-in of the cytology of figure 1. SM 2933x. On the left corner SM 8799x showing the pixelated nuclear details of the empty magnification.  B. ROI onScreen . Zoom-in of the surgical specimen of figure 2. SM 2933x.  C- SSVS-FOV-RGB. SM 640x A-SSVS-ROI-RAW. SM:2933x D- SSVS-ROI-RGB. SM 3200x B- SSVS-ROI-RAW.SM:2933x
  • 18. CONCLUSIONS 1. Projection magnification onChip (PMoC) is essential to evaluate the system sampling capabilities, the so-called DR o digital resolution that influenced visibility and digital image quality with or without computer assisted techniques. 2. Differences OnScreen of RAW /RGB images were related to higher DR and the contrast enhancement & light gathering provided by superresolution algorithm on the RAW images. 3. That SSVS are ideal for hand-held microscopes, 4M or even mobile phones with ad-on capture systems
  • 19. ION NT OU T E KY A N UR A T T H YO  catai@teide.net R FO  www.catai.net/blog  www.teide.net/catai

Hinweis der Redaktion

  1. IaaS = Infrastructure as a service DaaS = Data base as a service PaaS = http://catai.net/blog/2009/06/cloud-versus-grid-en-telemedicina/ Según Tim Berners-Lee, el creador de la World Wide Web, la verdadera revolución llegará con la web semántica, que también se incluiría dentro de la web 3.0. La web semántica trata de convertir la información en conocimiento, ordenar y clasificar los contenidos de la web para que los ordenadores sean capaces de interpretarlos y tomar decisiones a través del cruce de datos. Para ello se están desarrollando tecnologías que etiqueten la información con nombres comprensibles entre todos los dispositivos y programas informáticos. "Algunas teorías defienden que la web semántica es un nuevo nombre para la inteligencia artificial", explica Mari Carmen Marcos, profesora de Documentación de la Universitat Pompeu Fabra que estudia la web semántica. Internet no pensará en términos humanos, pero será capaz de establecer relaciones y resolver casos porque los datos estarán bien ordenados, señala Ivan Herman, director de la Actividad de Web Semántica del W3C -el consorcio de estándares de internet que dirige Berners-Lee-.