2. Main functions
Using workflow to identify diseases(Already implemented on Phenoflow),
and validate the output with gold/silver standard.
Using machinelearning algorithms to generate the silver standard
reference.
Generate artificial data for testing purposes.
3. The Standard Workflow
To start the workflow, the users need to have installed
the Cwltool and docker, and have both test cases
and gold reference present. testCases.csv
goldReference.csv
5. The Unsupervised
Learning Algorithms
To start both machine
learning algorithms,the
users must have installed
scikit-learn.
The unsupervisedlearning
algorithms can generate a
silver standard based on
the EHR data user provided.
6. The Supervised
Learning Algorithm
Different to the
unsupervisedlearning
algorithm, the supervised
learning algorithm needs
the users to have the test
cases, the gold reference,
and the unclassifiedall
present.