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Can Generative Adversarial Networks
Model Imaging Physics?
Dr. Debdoot Sheet
Assistant Professor, Department of Electrical Engineering
Principal Investigator, Kharagpur Learning, Imaging and Visualization Group
Indian Institute of Technology Kharagpur
www.facweb.iitkgp.ernet.in/~debdoot/
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 2
Disclosure
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 1
• Conflicts and Interests
– SkinCurate Research Pvt. Ltd. – Founder, stock options
– Intel Technology India Pvt. Ltd. – ResearchSponsor
– Dept. of Biotechnology, Govt. of India – Research Sponsor
– Nesa Medtech Pvt. Ltd. – Research Sponsor
– Sigtuple Technologies Pvt. Ltd. – ResearchSponsor
– Samsung Inc. – Research Sponsor
– Nvidia Inc. – Lab. Resources Sponsor
– Texas Instruments India Pvt. Ltd. – Lab. Resources Sponsor
– Analog Devices India Pvt. Ltd. – Lab. Resources Sponsor
– Indian Council of Medical Research, Govt. of India – Travel Grants
– Dept. of Science and Technology, Govt. of India – Travel Grants
– GE John F. Welch Technology Center (GE-JFWTC) – Startup Incubation Grant
– Biotechnology Industry Research Assistance Council (BIRAC) – Startup Incubation Grant
Can Generative Adversarial Networks
Model Imaging Physics?
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 3
Some experiences with simulating patho-realistic ultrasound images
In association with Francis Tom Debarghya China DeepSIP DeepKLIV
“Simulating Patho-realistic Ultrasound Images using Deep Generative
Networks with Adversarial Learning”
Francis Tom, Debdoot Sheet
IEEE International Symposium on Biomedical Imaging (ISBI), 2018.
Overview of the Talk
• Ultrasound Imaging
– Physics and Instrumentation
– Signal Processing and Visualization
– Simulating Ultrasound Images
• Artificial Neural Networks (ANN)
– Convolutional Neural Network (CNN)
– Generative Modeling
– Adversarial Learning
• Simulation via Adversarial Transformation
• Take home message
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 4
Ultrasound Imaging
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 5
Physics of Ultrasound Imaging
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 6
Transducer
• M. Ali, D. Magee and U. Dasgupta, "Signal Processing Overview of Ultrasound Systems for Medical Imaging", Texas Instruments
White Paper, no. SPRAB12, Nov., 2008.
• M. A. Haidekker, "Ultrasound imaging", Medical Imaging Technology, pp. 97-110, 2013.
Sensing and Analog Signal Processing
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 7
Transducer
T/R Switch
HV Transmitter
Analog Front End
Tx Beamformer,
Front-end digital
controller,
Rx Beamformer
z ! " = $%&,( ), *
%+,, ), * = %-,(. ) /01 ), * /01 ), * = 234 5 ,
sin 9:
sin 9;
=
<:
<;
%&,, ), * = %+,, ), *
<; cos9: − <: cos 9;
<; cos9: + <: cos 9;
;
%&,( ), * = %&,, ), * /01 ), * A ) = B ) + CD )
B ) = B( + B: ) E
D ) = F( ) + DG )
Digital Signal Processing
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 8
Transducer
9
*
H *, 9 = ! " I *, 9 = J log H *, 9 + <
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 9
Visualization
Who is this Person?
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 10
Ian Donald was a Professor of Midwifery at Glasgow University, when he
first explored the clinical use of ultrasound in the 1950s after seeing it
being used in the Glasgow shipyards to look for flaws in metallurgy.
Simulating Ultrasound
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 11
Jørgen Arendt Jensen and Peter Munk, ”Computer phantoms
for simulating ultrasound B-mode and cfm images”, Acoustical
Imaging”, vol. 23, pp. 75-80, Eds.: S. Lees and L. A. Ferrari,
Plenum Press, 1997.
J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A
computer simulation", Phys. Med. Biol., vol. 25, no. 3, pp. 463–
479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006]
Pseudo B-mode US Image Simulation
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 12
0 M, N = O M, N P Q
P Q ~S 0,1 F( =
2W)(
<
ℎY M, N = sin F(M 2
3
YZ
;[
Z
ℎE M, N = 2
3
EZ
;[]
Z
^ M, N = 0 M, N ∗ ℎY M, N ∗ ℎE M, N
I M, N = `abI2H" ^ M,N
J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A computer simulation", Phys. Med.
Biol., vol. 25, no. 3, pp. 463–479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006]
Where do we stand with Simulations?
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 13
Digital Phantom Pseudo B-mode US Real B-mode US
How to bridge this disparity in appearance?
The Challenge
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 14
0 M, N = O M, N P Q
P Q ~S 0,1
^ M, N = 0 M, N ∗ ℎY M, N ∗ ℎE M, N
I M, N = `abI2H" ^ M,N
J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A computer simulation", Phys. Med.
Biol., vol. 25, no. 3, pp. 463–479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006]
Are&these&convolution)kernels)not&descriptive&
enough&to&model&the&signal&mixing&process&
resulting&in&image&formation?
Can&we&learn the&convolution)kernels?
F( =
2W)(
<
ℎY M, N = sin F(M 2
3
YZ
;[
Z
ℎE M, N = 2
3
EZ
;[]
Z
Convolution
Convolutional Neural Networks [Debdoot Sheet] 15
cd =
/ − e + 2fd
gd
+ 1
ch =
i − ℎ + 2fh
gh
+ 1
cd
ch
fd
fh
gd
gh
Convolution
Convolutional Neural Networks [Debdoot Sheet] 16
3×/×i
3×e×ℎ
3×e×ℎ
/
i
2× / − e + 1 × i − ℎ + 1
Who is this Person?
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 17
Yann LeCun is well known for his work
on optical character recognition and
computer vision using convolutional neural
networks (CNN), also famously referred to as
the LeNet, and is a founding father of
convolutional nets.
He is also one of the main creators of
the DjVu image compression technology
(together with Léon Bottou and Patrick
Haffner).
Learning Convolution with a Neural Network
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 18
* =
* =f
lm
n
o
p
lmq:
rs
lm
tq:
= lm
t
− u
vw l
vlm
w l = r − rs
vw l
vlm
=
vw l
vr
vr
vlmq:
vp
vo
vo
vlm
#&Training&
Samples?
Generative Models
Adversarial Autencoder [Debdoot Sheet] 19
Encoder Decoderz
Adversarial Learning
Adversarial Autencoder [Debdoot Sheet] 20
Encoder Decoderz
Discriminator Fake vs. Real
Adversarial Transformation of Photographs
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 21
Ashish Shrivastava, Tomas Pfister, Oncel Tuzel, Joshua Susskind, Wenda Wang, & Russell Webb, “Learning from Simulated and
Unsupervised Images through Adversarial Training”, Proc. IEEE/CVF Conf. Comp. Vis. Patt. Recog. (CVPR), pp. 2107-2116, 2018.
(Best Paper @ CVPR2018)
Adversarial Transformation for US Simulation
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 22
Generator&Net
P 9
Discriminator&Net
x y
z{ 9
Simulated&vs.&Real
z| y
}z| y
}z{ 9
Digital&
Phantom
Simulated
Real
Adversarial Transformation for US Simulation
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 23
Hu, Y., Gibson, E., Lee, L. L., Xie, W., Barratt, D. C., Vercauteren, T., & Noble, J. A. (2017). Freehand Ultrasound Image Simulation
with Spatially-Conditioned Generative Adversarial Networks. In Molecular Imaging, Reconstruction and Analysis of Moving Body
Organs, and Stroke Imaging and Treatment (pp. 105-115). Springer, Cham.
The Challenges
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 24
Transducer
• Non&uniform&sampling&in&Cartesian&
coordinate&domain
• Signal&interpolated&for&image&
formation,&leading&to&smearing&of&
speckles
Our Solution
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 25
Digital&Phantom Digital&Phantom
cart2pol(&)
Pseudo&BLmode
Stage 0
Stage I
P+ 9
Stage II
P++ 9
z{~
9 z{~~
9
cart2pol(&)
Stage I
x+ y
Stage II
x++ y
z|~
y z|~~
y
Stage&I&Sim Stage&II&Sim
Real Real Simulated&vs.&Real
64&x&64 256&x&256256&x&256256&x&256256&x&256
}z{~
}z{~~
}z|~
}z|~~
Architecture of the Networks
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 26
Stage&I&G()
Stage&I&D()
Stage&II&G()
Stage&II&D()
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 27
Lets Quiz: Real vs. Simulated
Results
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 28
Intra-tissue similarity of speckle (JS div.) Inter-tissue dissimilarity of speckle (JS div.)
Take home message
• Full paper on US simulation:
https://arxiv.org/abs/1712.07881
• Adversarial autoencoders:
https://arxiv.org/abs/1511.05644
• Generative adversarial networks:
https://papers.nips.cc/paper/542
3-generative-adversarial-nets.pdf
17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 29

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Can Generative Adversarial Networks Model Imaging Physics?

  • 1. Can Generative Adversarial Networks Model Imaging Physics? Dr. Debdoot Sheet Assistant Professor, Department of Electrical Engineering Principal Investigator, Kharagpur Learning, Imaging and Visualization Group Indian Institute of Technology Kharagpur www.facweb.iitkgp.ernet.in/~debdoot/ 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 2
  • 2. Disclosure 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 1 • Conflicts and Interests – SkinCurate Research Pvt. Ltd. – Founder, stock options – Intel Technology India Pvt. Ltd. – ResearchSponsor – Dept. of Biotechnology, Govt. of India – Research Sponsor – Nesa Medtech Pvt. Ltd. – Research Sponsor – Sigtuple Technologies Pvt. Ltd. – ResearchSponsor – Samsung Inc. – Research Sponsor – Nvidia Inc. – Lab. Resources Sponsor – Texas Instruments India Pvt. Ltd. – Lab. Resources Sponsor – Analog Devices India Pvt. Ltd. – Lab. Resources Sponsor – Indian Council of Medical Research, Govt. of India – Travel Grants – Dept. of Science and Technology, Govt. of India – Travel Grants – GE John F. Welch Technology Center (GE-JFWTC) – Startup Incubation Grant – Biotechnology Industry Research Assistance Council (BIRAC) – Startup Incubation Grant
  • 3. Can Generative Adversarial Networks Model Imaging Physics? 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 3 Some experiences with simulating patho-realistic ultrasound images In association with Francis Tom Debarghya China DeepSIP DeepKLIV “Simulating Patho-realistic Ultrasound Images using Deep Generative Networks with Adversarial Learning” Francis Tom, Debdoot Sheet IEEE International Symposium on Biomedical Imaging (ISBI), 2018.
  • 4. Overview of the Talk • Ultrasound Imaging – Physics and Instrumentation – Signal Processing and Visualization – Simulating Ultrasound Images • Artificial Neural Networks (ANN) – Convolutional Neural Network (CNN) – Generative Modeling – Adversarial Learning • Simulation via Adversarial Transformation • Take home message 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 4
  • 5. Ultrasound Imaging 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 5
  • 6. Physics of Ultrasound Imaging 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 6 Transducer • M. Ali, D. Magee and U. Dasgupta, "Signal Processing Overview of Ultrasound Systems for Medical Imaging", Texas Instruments White Paper, no. SPRAB12, Nov., 2008. • M. A. Haidekker, "Ultrasound imaging", Medical Imaging Technology, pp. 97-110, 2013.
  • 7. Sensing and Analog Signal Processing 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 7 Transducer T/R Switch HV Transmitter Analog Front End Tx Beamformer, Front-end digital controller, Rx Beamformer z ! " = $%&,( ), * %+,, ), * = %-,(. ) /01 ), * /01 ), * = 234 5 , sin 9: sin 9; = <: <; %&,, ), * = %+,, ), * <; cos9: − <: cos 9; <; cos9: + <: cos 9; ; %&,( ), * = %&,, ), * /01 ), * A ) = B ) + CD ) B ) = B( + B: ) E D ) = F( ) + DG )
  • 8. Digital Signal Processing 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 8 Transducer 9 * H *, 9 = ! " I *, 9 = J log H *, 9 + <
  • 9. 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 9 Visualization
  • 10. Who is this Person? 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 10 Ian Donald was a Professor of Midwifery at Glasgow University, when he first explored the clinical use of ultrasound in the 1950s after seeing it being used in the Glasgow shipyards to look for flaws in metallurgy.
  • 11. Simulating Ultrasound 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 11 Jørgen Arendt Jensen and Peter Munk, ”Computer phantoms for simulating ultrasound B-mode and cfm images”, Acoustical Imaging”, vol. 23, pp. 75-80, Eds.: S. Lees and L. A. Ferrari, Plenum Press, 1997. J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A computer simulation", Phys. Med. Biol., vol. 25, no. 3, pp. 463– 479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006]
  • 12. Pseudo B-mode US Image Simulation 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 12 0 M, N = O M, N P Q P Q ~S 0,1 F( = 2W)( < ℎY M, N = sin F(M 2 3 YZ ;[ Z ℎE M, N = 2 3 EZ ;[] Z ^ M, N = 0 M, N ∗ ℎY M, N ∗ ℎE M, N I M, N = `abI2H" ^ M,N J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A computer simulation", Phys. Med. Biol., vol. 25, no. 3, pp. 463–479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006]
  • 13. Where do we stand with Simulations? 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 13 Digital Phantom Pseudo B-mode US Real B-mode US How to bridge this disparity in appearance?
  • 14. The Challenge 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 14 0 M, N = O M, N P Q P Q ~S 0,1 ^ M, N = 0 M, N ∗ ℎY M, N ∗ ℎE M, N I M, N = `abI2H" ^ M,N J. C. Bambre and R. J. Dickinson, "Ultrasonic B-scanning: A computer simulation", Phys. Med. Biol., vol. 25, no. 3, pp. 463–479, 1980. [http://dx.doi.org/10.1088/0031-9155/25/3/006] Are&these&convolution)kernels)not&descriptive& enough&to&model&the&signal&mixing&process& resulting&in&image&formation? Can&we&learn the&convolution)kernels? F( = 2W)( < ℎY M, N = sin F(M 2 3 YZ ;[ Z ℎE M, N = 2 3 EZ ;[] Z
  • 15. Convolution Convolutional Neural Networks [Debdoot Sheet] 15 cd = / − e + 2fd gd + 1 ch = i − ℎ + 2fh gh + 1 cd ch fd fh gd gh
  • 16. Convolution Convolutional Neural Networks [Debdoot Sheet] 16 3×/×i 3×e×ℎ 3×e×ℎ / i 2× / − e + 1 × i − ℎ + 1
  • 17. Who is this Person? 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 17 Yann LeCun is well known for his work on optical character recognition and computer vision using convolutional neural networks (CNN), also famously referred to as the LeNet, and is a founding father of convolutional nets. He is also one of the main creators of the DjVu image compression technology (together with Léon Bottou and Patrick Haffner).
  • 18. Learning Convolution with a Neural Network 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 18 * = * =f lm n o p lmq: rs lm tq: = lm t − u vw l vlm w l = r − rs vw l vlm = vw l vr vr vlmq: vp vo vo vlm #&Training& Samples?
  • 19. Generative Models Adversarial Autencoder [Debdoot Sheet] 19 Encoder Decoderz
  • 20. Adversarial Learning Adversarial Autencoder [Debdoot Sheet] 20 Encoder Decoderz Discriminator Fake vs. Real
  • 21. Adversarial Transformation of Photographs 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 21 Ashish Shrivastava, Tomas Pfister, Oncel Tuzel, Joshua Susskind, Wenda Wang, & Russell Webb, “Learning from Simulated and Unsupervised Images through Adversarial Training”, Proc. IEEE/CVF Conf. Comp. Vis. Patt. Recog. (CVPR), pp. 2107-2116, 2018. (Best Paper @ CVPR2018)
  • 22. Adversarial Transformation for US Simulation 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 22 Generator&Net P 9 Discriminator&Net x y z{ 9 Simulated&vs.&Real z| y }z| y }z{ 9 Digital& Phantom Simulated Real
  • 23. Adversarial Transformation for US Simulation 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 23 Hu, Y., Gibson, E., Lee, L. L., Xie, W., Barratt, D. C., Vercauteren, T., & Noble, J. A. (2017). Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. In Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment (pp. 105-115). Springer, Cham.
  • 24. The Challenges 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 24 Transducer • Non&uniform&sampling&in&Cartesian& coordinate&domain • Signal&interpolated&for&image& formation,&leading&to&smearing&of& speckles
  • 25. Our Solution 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 25 Digital&Phantom Digital&Phantom cart2pol(&) Pseudo&BLmode Stage 0 Stage I P+ 9 Stage II P++ 9 z{~ 9 z{~~ 9 cart2pol(&) Stage I x+ y Stage II x++ y z|~ y z|~~ y Stage&I&Sim Stage&II&Sim Real Real Simulated&vs.&Real 64&x&64 256&x&256256&x&256256&x&256256&x&256 }z{~ }z{~~ }z|~ }z|~~
  • 26. Architecture of the Networks 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 26 Stage&I&G() Stage&I&D() Stage&II&G() Stage&II&D()
  • 27. 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 27 Lets Quiz: Real vs. Simulated
  • 28. Results 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 28 Intra-tissue similarity of speckle (JS div.) Inter-tissue dissimilarity of speckle (JS div.)
  • 29. Take home message • Full paper on US simulation: https://arxiv.org/abs/1712.07881 • Adversarial autoencoders: https://arxiv.org/abs/1511.05644 • Generative adversarial networks: https://papers.nips.cc/paper/542 3-generative-adversarial-nets.pdf 17 May 2018 Can GANs Model Imaging Physics? [Debdoot Sheet] 29