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Promises of synthetic biology
# Drew Endy
# endy@stanford.edu
# Stanford Bioengineering & The BioBricks Foundation
# 3 November 2017
# Quaker Friends,Toronto
Disclaimer:
Promises are often asymmetric, from
me to you. Dreams instead have a
chance of being shared or held in
common. But sometimes dreams are
biased in time towards the future.
Love can be temporally agnostic,
recalling the past, touching the
present, and yearning for the future.
We will continue to learn more about
natural living systems.
We will continue to get “better” at
tinkering with living matter.
Developing & operationalizing your
“biology strategy” will be increasingly
important.
(2) biology + internet = bionet
(1) lineage-agnostic organisms
(3) most people are other people
(4) learning via synthesis
(5) surprise!
Why does synthetic biology matter?
(to one practicing synthetic biologist)
Surprise! DNA is an abiotic tape for storing
arbitrary digital data. Storage > biotech.
www.syntheticaesthetics.org
SISSEL TOLAAS
CHRISTINA AGAPAKIS
You are what you eat!
We eat what we are...
SISSEL TOLAAS
CHRISTINA AGAPAKIS
SISSEL TOLAAS
CHRISTINA AGAPAKIS
www.syntheticaesthetics.org
“Today we are introducing three
revolutionary products…”
Apple iDNA
Your personal DNA writer; aquatic eco-friendly chemistry; light powered
Is synthetic biology a revolutionary
technology that must PROMISE to
change nothing?
~daisy ginsberg
Increasing compute
Increasing DNA read
Increasing DNA write
Equity?
Meaning?
Citizenship?
http://nas-sites.org/synbioroadmap/
Growing is Forever, a film by Jesse Rosten
The living bridges of Cherrapunji, India are made from the roots of the Ficus elastica tree. (http://rootbridges.blogspot.com/)
Reproducing,
growing, &
healing materials
~90 terawatts;
pre-distributed
Massively functional
Living ramifications
Biology is many
places
Take infectious & other
diseases off the table
Provide for all
of humanity
Stabilize & recover
natural biodiversity
Enable a culture
of citizenship
Understand life
via building
What is our telos?
Paris ~500AD Paris ~2025AD
Energy,
Information,
& Matter mostly local
& all limiting…
Energy,
Information,
& Matter all networked
& none limiting…
On-demand distributed construction of lineage-agnostic organisms
(i.e., nature-compatible matter compilers)
>1% global literacy rate & empowerment for three essential tech. families
ROE >1 for affordable & sustainable energy
What do the banana slugs want?
What do Harry & Sally want? (see next slide)
ABiological Century?
by Gregory Benford
Keeping in mind the theme of this session,
I'm going to try to be fairly crazy. Perhaps
unfairly crazy. The best way to contemplate the
future, it seems to me, is not to think in catego-
ries of the present, but rather to learn fr/!lm
history, to the extent that it's possible, and
extrapolate from that. It's tough to do. The
hardest thing to realize about the future is that it
can be qualitatively different from the present,
just as our time is qualitatively different from the
era ofwestward expansion through the Great
Plains a century and a half ago.
I tend to believe that the 19th century was
dominated mostly by the metaphors and technol-
ogy of chemistry and mechanics. The 20th
century has been dominated by electronics, and,
of course, by physics, culminating in the incredi-
ble marriage of the atom and the rocket. Many of
these developments can be traced back to the
middle of the 19th century, when James Clerk
Maxwell formulated electrodynamics, which
ultimately gave us electronics. In the middle of
this century, Watson and Crick discovered the.
structure of DNA, setting the stage for a 21st
century that will be dominated by biology. And
it will contain as many surprises, if not more,
than we have seen in this century.
What would a biological century look like? If
the 19th century was characterized by hardware
and this century by information, that is, software,
we might believe that the next century will be
informed by liveware. Living technology. I
think the first evidence we'll see of this phenome-
non will be consumer products. Microbes
residing in your teeth that fight plaque. A
kitchen or bathroom mat that is alive and cleans
the room because it lives off what it eats. Or a
service that does windows because it's in fact a
green fungus that crawls around the outside of a
large building and lives there permanently, again
living offwhat it eats. Another possibility is a
grow-your-own-home. Why grow trees, chop
them into pieces, and then reassemble them? In
the long run, it might be much smarter to simply
engineer the genes of the trees and grow your
own house. We can imagine lots of these kinds
of things that will change the landscape of
personal life.
Now, what about the larger pictureI As we
heard from Professor Hood, the human genome
project proves again something we learned in
grade school: Learn to read a book and there
arises in some of us, regrettably perhaps, a
temptation to write a book. I believe we will
one day do that. But that will come further
downstream.
A biological century also raises the possibility
of brave new approaches to preserving threatened
tropical ecosystems. Suppose you're in the library
in Alexandria after it's caught fire, and you can
only save as many books as you can carry in one
basket. Do you rummage through the shelves
saying, "This is by Aristotle, but this is just
Alexander the Great's laundry list, so I'll take the
Aristotle?" Not if you're trying to work fast. You
would probably just grab everything you could
carry. Perhaps one of the things we ought to
discuss right now is a crash program to preserve
everything we can salvage out of the tropical
biospheres. Flora and fauna, sampled widely and
Engineering & Science/Spring 1992 53

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Promises of Synthetic Biology by Drew Endy

  • 1. Promises of synthetic biology # Drew Endy # endy@stanford.edu # Stanford Bioengineering & The BioBricks Foundation # 3 November 2017 # Quaker Friends,Toronto Disclaimer: Promises are often asymmetric, from me to you. Dreams instead have a chance of being shared or held in common. But sometimes dreams are biased in time towards the future. Love can be temporally agnostic, recalling the past, touching the present, and yearning for the future.
  • 2. We will continue to learn more about natural living systems. We will continue to get “better” at tinkering with living matter. Developing & operationalizing your “biology strategy” will be increasingly important.
  • 3.
  • 4. (2) biology + internet = bionet (1) lineage-agnostic organisms (3) most people are other people (4) learning via synthesis (5) surprise! Why does synthetic biology matter? (to one practicing synthetic biologist)
  • 5.
  • 6. Surprise! DNA is an abiotic tape for storing arbitrary digital data. Storage > biotech.
  • 7.
  • 9. You are what you eat! We eat what we are... SISSEL TOLAAS CHRISTINA AGAPAKIS SISSEL TOLAAS CHRISTINA AGAPAKIS www.syntheticaesthetics.org
  • 10.
  • 11.
  • 12. “Today we are introducing three revolutionary products…” Apple iDNA Your personal DNA writer; aquatic eco-friendly chemistry; light powered
  • 13. Is synthetic biology a revolutionary technology that must PROMISE to change nothing? ~daisy ginsberg
  • 14. Increasing compute Increasing DNA read Increasing DNA write Equity? Meaning? Citizenship?
  • 16.
  • 17. Growing is Forever, a film by Jesse Rosten
  • 18. The living bridges of Cherrapunji, India are made from the roots of the Ficus elastica tree. (http://rootbridges.blogspot.com/) Reproducing, growing, & healing materials ~90 terawatts; pre-distributed Massively functional Living ramifications Biology is many places Take infectious & other diseases off the table Provide for all of humanity Stabilize & recover natural biodiversity Enable a culture of citizenship Understand life via building What is our telos?
  • 19. Paris ~500AD Paris ~2025AD Energy, Information, & Matter mostly local & all limiting… Energy, Information, & Matter all networked & none limiting… On-demand distributed construction of lineage-agnostic organisms (i.e., nature-compatible matter compilers) >1% global literacy rate & empowerment for three essential tech. families ROE >1 for affordable & sustainable energy
  • 20.
  • 21.
  • 22.
  • 23. What do the banana slugs want? What do Harry & Sally want? (see next slide)
  • 24.
  • 25. ABiological Century? by Gregory Benford Keeping in mind the theme of this session, I'm going to try to be fairly crazy. Perhaps unfairly crazy. The best way to contemplate the future, it seems to me, is not to think in catego- ries of the present, but rather to learn fr/!lm history, to the extent that it's possible, and extrapolate from that. It's tough to do. The hardest thing to realize about the future is that it can be qualitatively different from the present, just as our time is qualitatively different from the era ofwestward expansion through the Great Plains a century and a half ago. I tend to believe that the 19th century was dominated mostly by the metaphors and technol- ogy of chemistry and mechanics. The 20th century has been dominated by electronics, and, of course, by physics, culminating in the incredi- ble marriage of the atom and the rocket. Many of these developments can be traced back to the middle of the 19th century, when James Clerk Maxwell formulated electrodynamics, which ultimately gave us electronics. In the middle of this century, Watson and Crick discovered the. structure of DNA, setting the stage for a 21st century that will be dominated by biology. And it will contain as many surprises, if not more, than we have seen in this century. What would a biological century look like? If the 19th century was characterized by hardware and this century by information, that is, software, we might believe that the next century will be informed by liveware. Living technology. I think the first evidence we'll see of this phenome- non will be consumer products. Microbes residing in your teeth that fight plaque. A kitchen or bathroom mat that is alive and cleans the room because it lives off what it eats. Or a service that does windows because it's in fact a green fungus that crawls around the outside of a large building and lives there permanently, again living offwhat it eats. Another possibility is a grow-your-own-home. Why grow trees, chop them into pieces, and then reassemble them? In the long run, it might be much smarter to simply engineer the genes of the trees and grow your own house. We can imagine lots of these kinds of things that will change the landscape of personal life. Now, what about the larger pictureI As we heard from Professor Hood, the human genome project proves again something we learned in grade school: Learn to read a book and there arises in some of us, regrettably perhaps, a temptation to write a book. I believe we will one day do that. But that will come further downstream. A biological century also raises the possibility of brave new approaches to preserving threatened tropical ecosystems. Suppose you're in the library in Alexandria after it's caught fire, and you can only save as many books as you can carry in one basket. Do you rummage through the shelves saying, "This is by Aristotle, but this is just Alexander the Great's laundry list, so I'll take the Aristotle?" Not if you're trying to work fast. You would probably just grab everything you could carry. Perhaps one of the things we ought to discuss right now is a crash program to preserve everything we can salvage out of the tropical biospheres. Flora and fauna, sampled widely and Engineering & Science/Spring 1992 53