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www.fao.org/plant-treaty
Marco Marsella
Assigning
Digital Object Identifiers (DOIs)
to Plant Genetic Resources
www.fao.org/plant-treaty
What is this webinar about?
• Some background
• The problem
• The solution
• The challenges
• The future
www.fao.org/plant-treaty
Background
• The International Treaty on Plant Genetic Resources for
Food and Agriculture (ITPGRFA)
• Promotes conservation and sustainable use of all plant
genetic resources for food and agriculture and the fair
and equitable sharing of the benefits arising out of their
use
• Facilitates access to PGRFA as well as to associated
information
• Established in 2004
• 144 contracting parties
www.fao.org/plant-treaty
Article 17 of the Treaty
“The Contracting Parties shall cooperate to develop and
strengthen a global information system to facilitate the
exchange of information, based on existing information
systems, on scientific, technical and environmental
matters related to plant genetic resources for food and
agriculture…”
www.fao.org/plant-treaty
Multilateral System of Access and Benefit Sharing
• Access to the PGRFAs is facilitated
• Benefit arising from their use are equitably shared
• The Benefit Sharing Fund
• Monetary and non monetary benefits
• Access is regulated through the Standard Material Transfer
Agreement
• Third Party Beneficiary
www.fao.org/plant-treaty
The SMTA
• Also regulates the exchange of information associated to
the PGRFA
• Provider’s obligation:
All available passport data and, subject to applicable law, any
other associated available non-confidential descriptive information,
shall be made available with the Plant Genetic Resources for Food
and Agriculture provided
• Recipient’s obligation:
The Recipient shall make available to the Multilateral System,
through the information system provided for in Article 17 of the
Treaty, all non-confidential information that results from research
and development carried out on the Material
Information = benefit
www.fao.org/plant-treaty
What happens now
Provider
Recipient
B
B
A
A
A
A -> B
www.fao.org/plant-treaty
How GLIS and DOIs will help
Provider
Recipient
GLIS
DOI
1
A
A -> B
DOI
1
A
B
DOI
1
DOI
2
DOI 1
A
DOI 2
B
www.fao.org/plant-treaty
Provider 1
A
Recipient 1
B
Transfer
Recipient 2
A
Transfer
D
Provider 2
Recipient 3
C
Transfer
Recipient 5
I
Transfer
H
Cross
E
Recipient 4
Transfer
G Transfer
F
Selection
www.fao.org/plant-treaty
Assigning DOIs to PGRFAs
• What is the DOI associated to?
• Physical material, not its description
• Holder of the material
• Descriptors
• Based on Multi Crop Passport Descriptors with some extensions
• Mandatory: Holder, species, method, date, local identifier
• Recommended: Biological status, links to web resources, etc.
• Additional: Information on collecting, breeding, etc.
• Mapping our descriptors to DataCite metadata
• Several descriptors -> title
• Holder of the material -> contributor
• Acquisition or collection date -> date and dateType
• “PGRFA Material” -> resourceType
• Method -> relationType
• Holder’s location and collecting location -> geoLocationPoint
www.fao.org/plant-treaty
The Global Information System (GLIS)
• Facilitate access to information already available on the Web
• Identify PGRFA through Digital Object Identifiers (DOIs)
• Store basic information on PGRFA to support discovery and
resolution
• Collect links to web systems where detailed information can
be found
• Promote standards and formats to facilitate interoperability
and data sharing among systems
• Promote “blessed” systems to facilitate participation
• Capacity building and data quality improvement
• Strengthening community ties
www.fao.org/plant-treaty
Advanced services offered by GLIS
• Relationships among PGRFAs
www.fao.org/plant-treaty
Advanced services offered by GLIS
• HasMetadata expansion
• Allows access to full set of descriptors in XML from within the DOI System
• Descriptors in multiple formats (Content Negotiation)
• XML
• JSON
• JSON-LD
• Darwin Core-Archive
• brAPI
• EventData
• GLIS will automatically provide links to publications citing the current DOI
www.fao.org/plant-treaty
GLIS for the user community
• Free-of-charge DOI minting
• The cost is covered by the Treaty Secretariat
• The Treaty is Member of DataCite
• The GLIS user community is represented
• Support for GLIS users
• Advice on adoption of DOIs
• Integration Toolkit
• Published formats and protocols to interoperate with GLIS
www.fao.org/plant-treaty
How you can register DOIs using GLIS
• Web form
• For small collections or for ad-hoc updates
• Excel or tab-delimited batch files
• For medium size collections or as a stop-gap solution
• XML-based protocol
• For large collections and real-time integration
www.fao.org/plant-treaty
The future of GLIS
• Become the “Google of PGRFA”
• Links to information hosted by FAO and other partners
• Technology transfer
• Traditional knowledge
• Early warning and threat advisory
• Regulations
• Other initiatives (e.g. CBD)
• Participate in standard setting initiatives
• Interoperability and data exchange
• Access to distributed systems
• Collaboration with existing systems
• FAO and third party (WIEWS, Genesys)
• Promote selected systems for adoption (GRIN-Global, B4R)
www.fao.org/plant-treaty
To know more about GLIS and DOIs
• www.fao.org/plant-treaty
• Details on the Treaty
• Details on the Global Information System
• DOIs
• Descriptors
• Guidelines
• Frequently Asked Questions
• Selected documentation and links
• Technical documentation
www.fao.org/plant-treaty
Thank you!
pgrfa-treaty@fao.org
marco.marsella@fao.org

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Assigning Digital Object Identifiers (DOIs) to Plant Genetic Resources

  • 1. www.fao.org/plant-treaty Marco Marsella Assigning Digital Object Identifiers (DOIs) to Plant Genetic Resources
  • 2. www.fao.org/plant-treaty What is this webinar about? • Some background • The problem • The solution • The challenges • The future
  • 3. www.fao.org/plant-treaty Background • The International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) • Promotes conservation and sustainable use of all plant genetic resources for food and agriculture and the fair and equitable sharing of the benefits arising out of their use • Facilitates access to PGRFA as well as to associated information • Established in 2004 • 144 contracting parties
  • 4. www.fao.org/plant-treaty Article 17 of the Treaty “The Contracting Parties shall cooperate to develop and strengthen a global information system to facilitate the exchange of information, based on existing information systems, on scientific, technical and environmental matters related to plant genetic resources for food and agriculture…”
  • 5. www.fao.org/plant-treaty Multilateral System of Access and Benefit Sharing • Access to the PGRFAs is facilitated • Benefit arising from their use are equitably shared • The Benefit Sharing Fund • Monetary and non monetary benefits • Access is regulated through the Standard Material Transfer Agreement • Third Party Beneficiary
  • 6. www.fao.org/plant-treaty The SMTA • Also regulates the exchange of information associated to the PGRFA • Provider’s obligation: All available passport data and, subject to applicable law, any other associated available non-confidential descriptive information, shall be made available with the Plant Genetic Resources for Food and Agriculture provided • Recipient’s obligation: The Recipient shall make available to the Multilateral System, through the information system provided for in Article 17 of the Treaty, all non-confidential information that results from research and development carried out on the Material Information = benefit
  • 8. www.fao.org/plant-treaty How GLIS and DOIs will help Provider Recipient GLIS DOI 1 A A -> B DOI 1 A B DOI 1 DOI 2 DOI 1 A DOI 2 B
  • 9. www.fao.org/plant-treaty Provider 1 A Recipient 1 B Transfer Recipient 2 A Transfer D Provider 2 Recipient 3 C Transfer Recipient 5 I Transfer H Cross E Recipient 4 Transfer G Transfer F Selection
  • 10. www.fao.org/plant-treaty Assigning DOIs to PGRFAs • What is the DOI associated to? • Physical material, not its description • Holder of the material • Descriptors • Based on Multi Crop Passport Descriptors with some extensions • Mandatory: Holder, species, method, date, local identifier • Recommended: Biological status, links to web resources, etc. • Additional: Information on collecting, breeding, etc. • Mapping our descriptors to DataCite metadata • Several descriptors -> title • Holder of the material -> contributor • Acquisition or collection date -> date and dateType • “PGRFA Material” -> resourceType • Method -> relationType • Holder’s location and collecting location -> geoLocationPoint
  • 11. www.fao.org/plant-treaty The Global Information System (GLIS) • Facilitate access to information already available on the Web • Identify PGRFA through Digital Object Identifiers (DOIs) • Store basic information on PGRFA to support discovery and resolution • Collect links to web systems where detailed information can be found • Promote standards and formats to facilitate interoperability and data sharing among systems • Promote “blessed” systems to facilitate participation • Capacity building and data quality improvement • Strengthening community ties
  • 12. www.fao.org/plant-treaty Advanced services offered by GLIS • Relationships among PGRFAs
  • 13. www.fao.org/plant-treaty Advanced services offered by GLIS • HasMetadata expansion • Allows access to full set of descriptors in XML from within the DOI System • Descriptors in multiple formats (Content Negotiation) • XML • JSON • JSON-LD • Darwin Core-Archive • brAPI • EventData • GLIS will automatically provide links to publications citing the current DOI
  • 14. www.fao.org/plant-treaty GLIS for the user community • Free-of-charge DOI minting • The cost is covered by the Treaty Secretariat • The Treaty is Member of DataCite • The GLIS user community is represented • Support for GLIS users • Advice on adoption of DOIs • Integration Toolkit • Published formats and protocols to interoperate with GLIS
  • 15. www.fao.org/plant-treaty How you can register DOIs using GLIS • Web form • For small collections or for ad-hoc updates • Excel or tab-delimited batch files • For medium size collections or as a stop-gap solution • XML-based protocol • For large collections and real-time integration
  • 16. www.fao.org/plant-treaty The future of GLIS • Become the “Google of PGRFA” • Links to information hosted by FAO and other partners • Technology transfer • Traditional knowledge • Early warning and threat advisory • Regulations • Other initiatives (e.g. CBD) • Participate in standard setting initiatives • Interoperability and data exchange • Access to distributed systems • Collaboration with existing systems • FAO and third party (WIEWS, Genesys) • Promote selected systems for adoption (GRIN-Global, B4R)
  • 17. www.fao.org/plant-treaty To know more about GLIS and DOIs • www.fao.org/plant-treaty • Details on the Treaty • Details on the Global Information System • DOIs • Descriptors • Guidelines • Frequently Asked Questions • Selected documentation and links • Technical documentation

Editor's Notes

  1. Presentation