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CELL BIOLOGY
       HCB 11103

        CHAPTER 1
INTRODUCTION TO CELL BIOLOGY


                               1
LEARNING OBJECTIVES
• To understand basic science CELL BIOLOGY
• Comprehend the way in which molecules of a
  cell cooperate to create a system that
  feeds, moves, grows, divides and respond to
  stimuli
• Be acquainted with the core concepts of cell
  biology in considerable depth
WHAT IS EXPECTED ON ME
UPON COMPLETING THIS
        SUBJECT
You are EXPECTED to…
• Acquire essential information of cell biology
  concepts that will help you to understand
  other biology subjects
• Identify the cellular structure, function and
  dysfunction ultimately result from specific
  macromolecules interactions
• Apply the concepts of cell biology using
  human example
CELL BIOLOGY
       Student Learning Time (SLT)

LECTURE: 22 HOURS
TUTORIALS & LAB PRACTICAL: 21 HOURS
OTHERS: 10 ½ HOURS
          -exam, test, assignment,etc
NF2F: 68 HOURS (independent learning)
Assessment Methods & Types
• Continuous assessments : 30%
• Mid term: 30%
• Final exam: 40%
• Passing marks: ↑ 40%
• Fail: 0-39% * refer to university rules &
  regulation handbook
• Teamwork & participation
STUDY TIPS


Study smart vs study hard
     Active learning
Student centered learning
Excels in Cell Biology
• Understand and memorize
• Enjoy the fascinating of GOD creation, the cell
  with W types of questions.
• Be prepared before coming to lectures, do your
  own research.
• You are suppose to be responsible for your
  studies not the lecturers, they only guide you.
• Power points note is for your reference not for
  you to depend on, and you are not suppose to
  give power point answer scheme during
  examination.
• Time investment.
NO SPOON FEEDING
      • INDEPENDENT LEARNING
          • ACTIVE LEARNING
         • STUDENT ORIENTED
        • APPLIED KNOWLEDGE

• CHALLENGE YOURSELF TO BE ANALYTICAL
CHAPTERS
• INTRODUCTION TO CELL BIOLOGY
• CHEMICAL BASIC OF LIFE
• STRUCTURE & FUNCTION OF PLASMA MEMBRANE
• CELLULAR RESPIRATION
• INTERACTIONS BETWEEN CELLS & THEIR
  ENVIRONMENT
• ENDOMEMBRANE SYSTEM
• CYTOSKELETON
REFERENCES
Compulsory
Gerald Karp (2008). Cell and Molecular Biology: Concepts and Experiments. John Wiley
   & Sons; 5th edition.



Additional:
1.Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Dennis Bray, Karen
Hopkin, Keith Roberts, Peter Walter (2003). Essential Cell Biology. Garland
Science/Taylor & Francis Group; 2nd edition.2.Albert, Bruce (2008). Molecular Biology of
the Cell. Garland Science; 5th edition.
Cell + Biology = Cell Biology

    Bio + logy = Biology
BIOLOGY?
   Biology (from Greek βιολογία - βίος, bios, "life"; -λογία, -logia, study of) is
   the science that studies living organisms


                                  principles              Botany             biochemistry

                                      Cell theory                          Molecular
      structure                       Evolution                            biology
                   function                               Zoology
                                      Genes
Living things            origin       Homeostasis                            Cellular
                                                                             biology
                                      Energy
                  evolution
                                                        Microbiology       Cell physiology
          distribution
 classification
                                                                             Ecology    14
CELL BIOLOGY?
• Cell biology (formerly cytology, from the
  Greek kytos, "container").

 Cell properties/ physiology


 Structure

 Organelles


Interaction with the
environments


                                              15
Why are these scientist keen to study the
     cell @ “container”, “krytos”?
Cell is structural and functional
   unit of all living organism
The cell is the structural unit of life.
All organism is make up of cells.          18
1.1 The Discovery of Cells (1)
• The discovery of cells
  followed form the
  invention of the
  microscope by Robert
  Hooke, and its
  refinement by Anton
  Leewenhoek.
The Discovery of Cells (2)
• Cell theory was articulated in the mid-1800s
  by Schleiden, Schwann and Virchow.
  – All organisms are composed or one or more cell.
  – The cell is the structural unit of life.
  – Cells arise from pre-existing cells by division.
1.2 Basic Properties of Cells (1)
• Life is the most basic
  property of cells.
• Cells can grow and
  reproduce in culture for
  extended periods.
   – HeLa cells are cultured
     tumor cells isolated form
     a cancer patient
     (Henrietta Lacks) by
     George Gey in 1951.
   – Cultured cells are an
     essential tool for cell
     biologists.
Basic Properties of Cells (2)
• Cells Are Highly Complex and Organized
   – Cellular processes are highly regulated.
   – Cells from different species share similar
     structure, composition and metabolic features that have
     been conserved throughout evolution.
Basic Properties of Cells (2)
Basic Properties of Cells (3)
• Cells Posses a Genetic Program and the Means
  to Use It
  – Genes encode information to build each cell, ad
    the organism.
  – Genes encode information for cellular
    reproduction, activity, and structure.
Levels of cellular and molecular organization
Basic Properties of Cells (4)
• Cells Are Capable of
  Producing More of
  Themselves
   – Cells reproduce, and
     each daughter cells
     receives a complete set
     of genetic instructions.
Basic Properties of Cells (5)
• Cells Acquire and Utilize Energy
  – Photosynthesis provides fuel for all living
    organisms.
  – Animal cells derive energy from the products of
    photosynthesis, mainly in the form of glucose.
  – Cell can convert glucose into ATP—a substance
    with readily available energy.
Basic Properties of Cells (6)
• Cells Acquire and Utilize
  Energy
• Cells Carry Out a Variety
  of Chemical Reactions
• Cells Engage in
  Mechanical Activities
• Cells Are Able to
  Respond to Stimuli
Basic Properties of Cells (7)
• Cells Are Capable of
  Self-Regulation
• Cells Evolve
1.3 Two Fundamentally Different
          Classes of Cells (1)
• Prokaryotic and
  eukaryotic are
  distinguished by their
  size and type of
  organelles.
• Prokaryotes are all
  bacteria, which arose
  ~3.7 billion years ago.
• Eukaryotes include
  protists, animals, plan
  ts and fungi.
A Comparison of Prokaryotic and
       Eukaryotic Cells
A Comparison of Prokaryotic and
       Eukaryotic Cells
Basic Properties of Cells (2)
• Characteristics that distinguish prokaryotic and
  eukaryotic cells
   – Complexity: Prokaryotes are relatively simple;
     eukaryotes are more complex in structure and
     function.
   – Genetic material:
      • Packaging: Prokaryotes have a nucleoid region whereas
        eukaryotes have a membrane-bound nucleus.
      • Amount: Eukaryotes have much more genetic material than
        prokaryotes.
      • Form: Eukaryotes have many chromosomes made of both
        DNA and protein whereas prokaryotes have a single, circular
        DNA.
The structure of cells
The structure of cells
The structure of cells
Basic Properties of Cells (3)
• Characteristics that distinguish prokaryotes and
  eukaryotes
  – Cytoplasm: Eukaryotes have membrane-bound
    organelles ad complex cytoskeletal proteins. Both
    have ribosomes but they differ in size.
  – Cellular reproduction: Eukaryotes divide by mitosis;
    prokaryotes divide by simple fission.
  – Locomotion: Eukaryotes use both cytoplasmic
    movement, and cilia and flagella; prokaryotes have
    flagella, but they differ in both form and mechanism.
The structure
of a eukaryotic
      cell
The cytoplasm of a eukaryotic cell is a
       crowded compartment
Cellular reproduction in eukaryotes
          and prokaryotes
Basic Properties of Cells (5)
• Prokaryotic Diversity
   – Prokaryotes are identified and classified on the basis of
     specific DNA sequences.
   – Recent evidence indicates that prokaryotes are more
     diverse and numerous than previous thought.
Basic Properties of Cells (6)
• Types of Eukaryotic Cells: Cell Specialization
  – Unicellular eukaryotes are complex single-celled
    organisms.
  – Multicellular eukaryotes have different cell types
    for different functions.
     • Differentiation occurs during embryonic development
       in other multicellular organisms.
     • Numbers and arrangements of organelles relate to the
       function of the cell.
     • Despite differentiation, cells have many features in
       common.
Basic Properties of Cells (7)
• Multicellular eukaryotes have different cell
  types for different functions.
  – Model Organisms:
     • Cell research focuses on six model organisms.
     • These are the bacterium Escherichia coli, the yeast
       Saccharomyces, the mustard plant Arabidopsis, the
       nematode Caenorhabditis elegans, the fruit fly
       Drosophila, and the mouse Mus musculus.
Six model organisms
The Human Perspective: The Prospect of Cell
            Replacement Therapy (1)

• Stem cells are undifferentiated cells capable
  of self-renewal and differentiation.
  – Adult stem cells can be used to replace damaged
    or diseased adult tissue.
     • Hematopoietic stem cells can produce blood cells in
       bone marrow.
     • Neural stem cells may be sued to treat
       neurodegenerative disorders.
An adult stem cell
The Human Perspective: The Prospect of Cell
            Replacement Therapy (2)

• Embryonic stem (ES) cells have even greater
  potential for differentiation (pluripotent) than
  adult stem cells.
  – ES cells must be differentiated in vitro.
  – The use of ES cells involves ethical considerations.
A procedure for obtaining differentiated cells for
        use in cell replacement therapy
The Human Perspective: The Prospect of Cell
            Replacement Therapy (3)

• Induced pluripotent (iPS) cells has been
  demonstrated in culture.
  – Involves reprogramming a fully differentiated cell
    into a pluripotent stem cell.
  – These cells have been used to correct certain
    disease conditions in experimental animals.
  – Studies to reveal the mechanism of iPS could have
    significant medical applications.
Steps taken to generate iPS for use in correcting
the inherited disease sickle cell anemia in mice
Basic Properties of Cells (8)
• The Sizes of Cells and Their Components
  – Cells are commonly measured in units of
    micrometers (1 μm = 10–6 meter) and nanometers
    (1 nm = 10–9 meter).
  – Cell size is limited:
     • By the volume of cytoplasm that can be supported by
       the genes in the nucleus.
     • By the volume of cytoplasm that can be supported by
       exchange of nutrients.
     • By the distance over which substances can efficiently
       travel through the cytoplasm via diffusion.
Relative sizes of
 cells and cell
 components
Basic Properties of Cells (9)
• Synthetic Biology is a field oriented to create
  a living cell in the laboratory.
  – A more modest goal is to develop novel life
    forms, beginning with existing organisms.
  – Possible applications to medicine, industry, or the
    environment.
  – Prospect is good after replacing the genome of
    one bacterium with that of a closely related
    species.
Experimental Pathways: The Origin of Eukaryotic
                  Cells (1)
• Prokaryotic cells arose first and gave rise to
  eukaryotic cells.
• Endosymbiont Theory: organelles in
  eukaryotic cells (mitochondria and
  chloroplasts) evolved from smaller prokaryotic
  cells.
Experimental Pathways: The Origin of Eukaryotic
                  Cells (2)
• Evidence to support endosymbiont theory
  – Absence of eukaryote species with organelles in
    an intermediate stage of evolution.
  – Many symbiotic relations are known among
    different organisms.
  – Organelles of eukaryotic cells contain their own
    DNA.
  – Nucleotide sequences of rRNAs from eukaryotic
    organelles resembled that of prokaryotes.
  – Organelles duplicate independently of nucleus.
A model depicting
 possible steps in
  endosymbiosis

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Chapter 1 cell biology intro cell

  • 1. CELL BIOLOGY HCB 11103 CHAPTER 1 INTRODUCTION TO CELL BIOLOGY 1
  • 2. LEARNING OBJECTIVES • To understand basic science CELL BIOLOGY • Comprehend the way in which molecules of a cell cooperate to create a system that feeds, moves, grows, divides and respond to stimuli • Be acquainted with the core concepts of cell biology in considerable depth
  • 3. WHAT IS EXPECTED ON ME UPON COMPLETING THIS SUBJECT
  • 4. You are EXPECTED to… • Acquire essential information of cell biology concepts that will help you to understand other biology subjects • Identify the cellular structure, function and dysfunction ultimately result from specific macromolecules interactions • Apply the concepts of cell biology using human example
  • 5. CELL BIOLOGY Student Learning Time (SLT) LECTURE: 22 HOURS TUTORIALS & LAB PRACTICAL: 21 HOURS OTHERS: 10 ½ HOURS -exam, test, assignment,etc NF2F: 68 HOURS (independent learning)
  • 6. Assessment Methods & Types • Continuous assessments : 30% • Mid term: 30% • Final exam: 40% • Passing marks: ↑ 40% • Fail: 0-39% * refer to university rules & regulation handbook • Teamwork & participation
  • 7. STUDY TIPS Study smart vs study hard Active learning Student centered learning
  • 8. Excels in Cell Biology • Understand and memorize • Enjoy the fascinating of GOD creation, the cell with W types of questions. • Be prepared before coming to lectures, do your own research. • You are suppose to be responsible for your studies not the lecturers, they only guide you. • Power points note is for your reference not for you to depend on, and you are not suppose to give power point answer scheme during examination. • Time investment.
  • 9. NO SPOON FEEDING • INDEPENDENT LEARNING • ACTIVE LEARNING • STUDENT ORIENTED • APPLIED KNOWLEDGE • CHALLENGE YOURSELF TO BE ANALYTICAL
  • 11. • INTRODUCTION TO CELL BIOLOGY • CHEMICAL BASIC OF LIFE • STRUCTURE & FUNCTION OF PLASMA MEMBRANE • CELLULAR RESPIRATION • INTERACTIONS BETWEEN CELLS & THEIR ENVIRONMENT • ENDOMEMBRANE SYSTEM • CYTOSKELETON
  • 12. REFERENCES Compulsory Gerald Karp (2008). Cell and Molecular Biology: Concepts and Experiments. John Wiley & Sons; 5th edition. Additional: 1.Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Dennis Bray, Karen Hopkin, Keith Roberts, Peter Walter (2003). Essential Cell Biology. Garland Science/Taylor & Francis Group; 2nd edition.2.Albert, Bruce (2008). Molecular Biology of the Cell. Garland Science; 5th edition.
  • 13. Cell + Biology = Cell Biology Bio + logy = Biology
  • 14. BIOLOGY? Biology (from Greek βιολογία - βίος, bios, "life"; -λογία, -logia, study of) is the science that studies living organisms principles Botany biochemistry Cell theory Molecular structure Evolution biology function Zoology Genes Living things origin Homeostasis Cellular biology Energy evolution Microbiology Cell physiology distribution classification Ecology 14
  • 15. CELL BIOLOGY? • Cell biology (formerly cytology, from the Greek kytos, "container"). Cell properties/ physiology Structure Organelles Interaction with the environments 15
  • 16. Why are these scientist keen to study the cell @ “container”, “krytos”?
  • 17. Cell is structural and functional unit of all living organism
  • 18. The cell is the structural unit of life. All organism is make up of cells. 18
  • 19. 1.1 The Discovery of Cells (1) • The discovery of cells followed form the invention of the microscope by Robert Hooke, and its refinement by Anton Leewenhoek.
  • 20. The Discovery of Cells (2) • Cell theory was articulated in the mid-1800s by Schleiden, Schwann and Virchow. – All organisms are composed or one or more cell. – The cell is the structural unit of life. – Cells arise from pre-existing cells by division.
  • 21. 1.2 Basic Properties of Cells (1) • Life is the most basic property of cells. • Cells can grow and reproduce in culture for extended periods. – HeLa cells are cultured tumor cells isolated form a cancer patient (Henrietta Lacks) by George Gey in 1951. – Cultured cells are an essential tool for cell biologists.
  • 22. Basic Properties of Cells (2) • Cells Are Highly Complex and Organized – Cellular processes are highly regulated. – Cells from different species share similar structure, composition and metabolic features that have been conserved throughout evolution.
  • 23. Basic Properties of Cells (2)
  • 24. Basic Properties of Cells (3) • Cells Posses a Genetic Program and the Means to Use It – Genes encode information to build each cell, ad the organism. – Genes encode information for cellular reproduction, activity, and structure.
  • 25. Levels of cellular and molecular organization
  • 26. Basic Properties of Cells (4) • Cells Are Capable of Producing More of Themselves – Cells reproduce, and each daughter cells receives a complete set of genetic instructions.
  • 27. Basic Properties of Cells (5) • Cells Acquire and Utilize Energy – Photosynthesis provides fuel for all living organisms. – Animal cells derive energy from the products of photosynthesis, mainly in the form of glucose. – Cell can convert glucose into ATP—a substance with readily available energy.
  • 28. Basic Properties of Cells (6) • Cells Acquire and Utilize Energy • Cells Carry Out a Variety of Chemical Reactions • Cells Engage in Mechanical Activities • Cells Are Able to Respond to Stimuli
  • 29. Basic Properties of Cells (7) • Cells Are Capable of Self-Regulation • Cells Evolve
  • 30. 1.3 Two Fundamentally Different Classes of Cells (1) • Prokaryotic and eukaryotic are distinguished by their size and type of organelles. • Prokaryotes are all bacteria, which arose ~3.7 billion years ago. • Eukaryotes include protists, animals, plan ts and fungi.
  • 31. A Comparison of Prokaryotic and Eukaryotic Cells
  • 32. A Comparison of Prokaryotic and Eukaryotic Cells
  • 33. Basic Properties of Cells (2) • Characteristics that distinguish prokaryotic and eukaryotic cells – Complexity: Prokaryotes are relatively simple; eukaryotes are more complex in structure and function. – Genetic material: • Packaging: Prokaryotes have a nucleoid region whereas eukaryotes have a membrane-bound nucleus. • Amount: Eukaryotes have much more genetic material than prokaryotes. • Form: Eukaryotes have many chromosomes made of both DNA and protein whereas prokaryotes have a single, circular DNA.
  • 37. Basic Properties of Cells (3) • Characteristics that distinguish prokaryotes and eukaryotes – Cytoplasm: Eukaryotes have membrane-bound organelles ad complex cytoskeletal proteins. Both have ribosomes but they differ in size. – Cellular reproduction: Eukaryotes divide by mitosis; prokaryotes divide by simple fission. – Locomotion: Eukaryotes use both cytoplasmic movement, and cilia and flagella; prokaryotes have flagella, but they differ in both form and mechanism.
  • 38. The structure of a eukaryotic cell
  • 39. The cytoplasm of a eukaryotic cell is a crowded compartment
  • 40. Cellular reproduction in eukaryotes and prokaryotes
  • 41.
  • 42. Basic Properties of Cells (5) • Prokaryotic Diversity – Prokaryotes are identified and classified on the basis of specific DNA sequences. – Recent evidence indicates that prokaryotes are more diverse and numerous than previous thought.
  • 43. Basic Properties of Cells (6) • Types of Eukaryotic Cells: Cell Specialization – Unicellular eukaryotes are complex single-celled organisms. – Multicellular eukaryotes have different cell types for different functions. • Differentiation occurs during embryonic development in other multicellular organisms. • Numbers and arrangements of organelles relate to the function of the cell. • Despite differentiation, cells have many features in common.
  • 44. Basic Properties of Cells (7) • Multicellular eukaryotes have different cell types for different functions. – Model Organisms: • Cell research focuses on six model organisms. • These are the bacterium Escherichia coli, the yeast Saccharomyces, the mustard plant Arabidopsis, the nematode Caenorhabditis elegans, the fruit fly Drosophila, and the mouse Mus musculus.
  • 46. The Human Perspective: The Prospect of Cell Replacement Therapy (1) • Stem cells are undifferentiated cells capable of self-renewal and differentiation. – Adult stem cells can be used to replace damaged or diseased adult tissue. • Hematopoietic stem cells can produce blood cells in bone marrow. • Neural stem cells may be sued to treat neurodegenerative disorders.
  • 48. The Human Perspective: The Prospect of Cell Replacement Therapy (2) • Embryonic stem (ES) cells have even greater potential for differentiation (pluripotent) than adult stem cells. – ES cells must be differentiated in vitro. – The use of ES cells involves ethical considerations.
  • 49. A procedure for obtaining differentiated cells for use in cell replacement therapy
  • 50. The Human Perspective: The Prospect of Cell Replacement Therapy (3) • Induced pluripotent (iPS) cells has been demonstrated in culture. – Involves reprogramming a fully differentiated cell into a pluripotent stem cell. – These cells have been used to correct certain disease conditions in experimental animals. – Studies to reveal the mechanism of iPS could have significant medical applications.
  • 51. Steps taken to generate iPS for use in correcting the inherited disease sickle cell anemia in mice
  • 52. Basic Properties of Cells (8) • The Sizes of Cells and Their Components – Cells are commonly measured in units of micrometers (1 μm = 10–6 meter) and nanometers (1 nm = 10–9 meter). – Cell size is limited: • By the volume of cytoplasm that can be supported by the genes in the nucleus. • By the volume of cytoplasm that can be supported by exchange of nutrients. • By the distance over which substances can efficiently travel through the cytoplasm via diffusion.
  • 53. Relative sizes of cells and cell components
  • 54. Basic Properties of Cells (9) • Synthetic Biology is a field oriented to create a living cell in the laboratory. – A more modest goal is to develop novel life forms, beginning with existing organisms. – Possible applications to medicine, industry, or the environment. – Prospect is good after replacing the genome of one bacterium with that of a closely related species.
  • 55. Experimental Pathways: The Origin of Eukaryotic Cells (1) • Prokaryotic cells arose first and gave rise to eukaryotic cells. • Endosymbiont Theory: organelles in eukaryotic cells (mitochondria and chloroplasts) evolved from smaller prokaryotic cells.
  • 56. Experimental Pathways: The Origin of Eukaryotic Cells (2) • Evidence to support endosymbiont theory – Absence of eukaryote species with organelles in an intermediate stage of evolution. – Many symbiotic relations are known among different organisms. – Organelles of eukaryotic cells contain their own DNA. – Nucleotide sequences of rRNAs from eukaryotic organelles resembled that of prokaryotes. – Organelles duplicate independently of nucleus.
  • 57. A model depicting possible steps in endosymbiosis