Phil Bourne - One man's perspective on Open Science

Open Science One Person’s View and What We Are Doing About It Philip E. Bourne University of California San Diego [email_address] edu PSB Open Science Workshop 2009

So Why am I Here? ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Agenda ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Today’s Research Contract Research [Grants] Journal Article Conference Paper Poster Session Feds Societies Publishers Reviews Blogs Community Service/Data

Tomorrows Research Contract ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Tomorrows Research Contract: Evidence ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

The Vision… ,[object Object],PSB Open Science Workshop 2009

What is Missing to Make the Vision a Reality? ,[object Object],[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

What are the Catalysts for Change? ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Where are we Today? ,[object Object],[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Catalyst for Change: Open Access (Creative Commons License) ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Catalyst for Change: Open Access (Creative Commons License) ,[object Object],[object Object],[object Object],The catalyst PLoS Comp Biol 2008 4(3) e1000037 PSB Open Science Workshop 2009

Community Reaction? Most scientists have no idea that this implies that anyone can take their material and enhance it e.g., via mashup and effectively republish it PSB Open Science Workshop 2009

Database and Journal Integration- The Test Bed http://www.pdb.org/ Journals Database http://www.pubmedcentral.nih.gov PSB Open Science Workshop 2009

BioLit: Tools for New Modes of Scientific Dissemination ,[object Object],[object Object],[object Object],[object Object],1. A link brings up figures from the paper 0. Full text of PLoS papers stored in a database 2. Clicking the paper figure retrieves data from the PDB which is analyzed 3. A composite view of journal and database content results 4. The composite view has links to pertinent blocks of literature text and back to the PDB 1. 2. 3. 4. The Knowledge and Data Cycle http://biolit.ucsd.edu

http://biolit.ucsd.edu Nucleic Acids Research 2008 36(S2) W385-389 PSP Washington DC Feb. 2008

PSB Open Science Workshop 2009

ICTP Trieste, December 10, 2007

Data Clustering via the Literature PSB Open Science Workshop 2009 Immunology Literature Cardiac Disease Literature

Semantic Richness Should be at the Point of Authoring - BioLit Plugin Project Author Paper Word File in Docx format Publisher

Notion of traditional publications being associated with podcasts and video www.scivee.tv

Pubcast – Video Integrated with the Full Text of the Paper

Professional Profile ICTP Trieste, December 2007

SciVee – Viral Projects ,[object Object],[object Object],[object Object],[object Object]

Postercasts PSB Open Science Workshop 2009

Summary ,[object Object],[object Object],[object Object],PSB Open Science Workshop 2009

Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],CT Watch 2007 , 3(3) 26-31 PSB Open Science Workshop 2009

Questions? [email_address] PSB Open Science Workshop 2009

Phil Bourne - One man's perspective on Open Science

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Phil Bourne - One man's perspective on Open Science