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The myExperiment approach to Open Science David De Roure Carole Goble Jiten Bhagat Don Cruickshank
scientists Graduate Students Undergraduate Students experimentation Data, Metadata Provenance Workflows Ontologies Digital Libraries The social process of Science 2.0 Local Web Repositories Virtual Learning Environment Technical Reports Reprints Peer-Reviewed Journal & Conference Papers Preprints & Metadata Certified Experimental Results & Analyses
Sharing pieces of process Carole Goble and David De Roure,  Curating Scientific Web Services and Workflows , EDUCAUSE Review, vol. 43, no. 5 (September/October 2008)  http://usefulchem.wikispaces.com/page/code/EXPLAN001 http://www.microsoft.com/mscorp/tc/trident.mspx http://www.mygrid.org.uk/tools/taverna/
myExperiment.org is… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment.org is... myExperiment currently has 1400 registered users, 120 groups, 540 workflows, 147 files and 44 packs
 
 
 
 
 
“ Do I want my Science associated with a medium like this?”
myExperiment.org is… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment Features Distinctives
Ownership and Attribution The most important aspect of myExperiment Designed by scientists
Packs ,[object Object],[object Object],[object Object]
 
Exporting packs
24/5/2007  |  myExperiment  |  Slide
Google Gadgets Bringing myExperiment to the iGoogle user
Taverna Plugin Bringing myExperiment to the Taverna user
Facebook
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX myexp: <http://rdf.myexperiment.org/ontology#> PREFIX sioc: <http://rdfs.org/sioc/ns#> select ?friend1 ?friend2 ?acceptedat where {?z rdf:type <http://rdf.myexperiment.org/ontology#Friendship> . ?z myexp:has-requester ?x . ?x sioc:name ?friend1 . ?z myexp:has-accepter ?y . ?y sioc:name ?friend2 . ?z myexp:accepted-at ?acceptedat } All accepted Friendships including accepted-at time Semantically-Interlinked Online Communities SPARQL endpoint
 
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Six Principles of Software Design to Empower Scientists ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],De Roure, D. and Goble, C. Software Design for Empowering Scientists, IEEE Software, Volume 26, Issue 1, Jan-Feb 2009, pages 88-95.
e-Laboratory Lifecycle
Workflow Monitoring Event Logging Social Metadata Annotation Service Search User Registration Distributed Data Query Job Execution Naming and Identity Anonymisation Text Mining  Research Object Management Assembling e-Laboratories Example Core Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Content Capture and Curation Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed seed refine validate seed Automated  refine validate seed Reuse and Symbiosis
Summary ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Dave de Roure - The myExperiment approach towards Open Science

  • 1. The myExperiment approach to Open Science David De Roure Carole Goble Jiten Bhagat Don Cruickshank
  • 2. scientists Graduate Students Undergraduate Students experimentation Data, Metadata Provenance Workflows Ontologies Digital Libraries The social process of Science 2.0 Local Web Repositories Virtual Learning Environment Technical Reports Reprints Peer-Reviewed Journal & Conference Papers Preprints & Metadata Certified Experimental Results & Analyses
  • 3. Sharing pieces of process Carole Goble and David De Roure, Curating Scientific Web Services and Workflows , EDUCAUSE Review, vol. 43, no. 5 (September/October 2008) http://usefulchem.wikispaces.com/page/code/EXPLAN001 http://www.microsoft.com/mscorp/tc/trident.mspx http://www.mygrid.org.uk/tools/taverna/
  • 4.
  • 5.  
  • 6.  
  • 7.  
  • 8.  
  • 9.  
  • 10. “ Do I want my Science associated with a medium like this?”
  • 11.
  • 12. Ownership and Attribution The most important aspect of myExperiment Designed by scientists
  • 13.
  • 14.  
  • 16. 24/5/2007 | myExperiment | Slide
  • 17. Google Gadgets Bringing myExperiment to the iGoogle user
  • 18. Taverna Plugin Bringing myExperiment to the Taverna user
  • 20. PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX myexp: <http://rdf.myexperiment.org/ontology#> PREFIX sioc: <http://rdfs.org/sioc/ns#> select ?friend1 ?friend2 ?acceptedat where {?z rdf:type <http://rdf.myexperiment.org/ontology#Friendship> . ?z myexp:has-requester ?x . ?x sioc:name ?friend1 . ?z myexp:has-accepter ?y . ?y sioc:name ?friend2 . ?z myexp:accepted-at ?acceptedat } All accepted Friendships including accepted-at time Semantically-Interlinked Online Communities SPARQL endpoint
  • 21.  
  • 22.
  • 24.
  • 25. Content Capture and Curation Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed seed refine validate seed Automated refine validate seed Reuse and Symbiosis
  • 26.
  • 27.