Repositories for Scientific Data: An #animalgarden show (Pecha Kucha) - Peter Murray-Rust
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Peter Murray-Rust's Pecha Kucha presentation "Repositories for Scientific Data: An #animalgarden show" which was delivered on Friday 2nd August 2013 at the Repository Fringe 2013.
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Repositories for Scientific Data: An #animalgarden show (Pecha Kucha) - Peter Murray-Rust
- 1. REPOSITORIES FOR SCIENTIFIC DATA An #animalgarden show Peter Murray-Rust, OKFN and University of Cambridge Chuff OWL Moomin AMI Gulliver Sleepless cleanTux UncleSam
- 2. I’m AMI studying biodiversity. I compute phylogenetic trees Only 4% of computed trees are saved I’m in a pear tree.
- 3. Where can I put my data? Institutional repos don’t work, we’ve tried WE NEED DOMAIN REPOSITORIES FOR SCIENCE
- 4. So how do you manage data? We’re BIG DATA at NASA We hire data experts
- 5. But I’m a LONG-TAIL scientist!
- 6. Australia have a national data service (ANDS) We could use their TARDIS* Let’s ask the crystallographers. They save their data
- 7. I want to publish this paper You MUST send ALL the data. The IUCr will check if it’s correct
- 8. It takes years to create vocabularies Core dictionary (coreCIF) version 2.4.3 _diffrn_ambient_temperature Definition: The mean temperature in kelvins at which the intensities were measured. Range: 0.0 -> infinity Type: numb ID For humans For machines: Constraint + type We need domain vocabularies through inter/national efforts
- 9. PMRgroup also built a crystal structure repo (Crystaleye) It’s got 200,000 entries But none from Elsevier, Wiley, Springer
- 10. And NONE of the results are archived Computational Materials scientists costs 1,000 Million USD / year PMR wrote software to turn FORTRAN into XML
- 11. PMR and others have started a global effort to create vocabularies It’s hard and slow work PMR group built compchem repository Chempound XML RDF NoSQL SPARQL
- 12. Is PMR making progress? Hoping to work with Obama’s 500 M USD “materials genome”
- 13. WE NEED DOMAIN REPOSITORIES FOR BIODIVERSITY
- 14. We could use Figshare As long as it’s Open Or OKFN’s CKAN
- 15. And we can also do theses! PMR and Ross Mounce will index the whole of published bioscience! 5 years of JISC projects helped
- 16. We’re going to index SPECIES, PLACES, DATES I’m a baby Buddleja Davidii
- 17. OKFN Chuff! I’m an Okapi balloonii
- 18. WE NEED DOMAIN REPOSITORIES FOR SCIENCE Wake up, nearly finished PechaKucha i knackering
- 19. Chuff REPOSITORIES FOR SCIENTIFIC DATA An #animalgarden show Peter Murray-Rust, OKFN and University of Cambridge WE NEED DOMAIN REPOSITORIES FOR SCIENCE