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A. Taxonomy Defined
    1. Grouping of organisms - the science of
 classifying living organisms based on shared
 features

    2. Principles of classification – the practice
 or principles of classification

     3. Study of classification – the study of the
 rules and practice of classifying living
 organisms
QUESTION:

  Would you also consider that
taxonomy deals with
IDENTIFICATION of living
organisms? Why or why not?
Taxonomy involves:
1. Classification – ranking of groups of
   organisms in some hierarchical relationship
   - based on their similarities in their
   characteristics (genetic relationship, internal
   and external anatomy, physiology or
   evolutionary history)

2. Identification – separation of one group
   from other groups according to their unique
   characteristics
   Identifying organisms based on their
    morphology, anatomy, physiology, cytology,
    biochemistry and geographic distribution

WHAT ARE THE ROLES of TAXONOMISTS
 and SYSTEMATICISTS?

To classify, identify and make a census
 of the unique characteristics of each
 species.
   To reconstruct the evolutionary history of the
    present classified species based on
    morphology, anatomy, chemical
    composition, geographic
    distribution, breeding behavior, and
    chromosome number
   To determine which traits are advanced
    (derived in time from primitive traits) or
    primitive
 To discover all species of animals.
 To reconstruct their evolutionary
  relationships.
 To classify animals according to their
  evoutionary relationships.
   Unexplored areas, only an estimation could
    be done
   Continuous evolution process (diversification)
   Continuous extinction

   How about in local settings?
   300 BC
Aristotle – used dichotomies or polar opposites
Ex. Animals with blood and without blood
 (vertebrates and invertebrates)
           - wrote extensively on both plants
 and animals but his writings on plants were
 lost

Theophrastus – Aristotle’s pupil and applied
 his approach to the study of plants in his
 work “Inquiry into Plants”
Theophrastus – subdivided plants based on
 shape, and into broad categories as
 trees, shrubs, and herbs

Dioscorides – developed a more practical
 approach
          - Ex. Medicinal herbs were separated
 from those used in making perfumes
Polynomial System
-translation of the common names of
 organisms into Latin
-each species was described in Latin by a
 sentence limited to 12 words that begins with
 the genus name
-Ex. Spiderwort -Tradescantia ephemerum
    phalangoides tripetalum non repens
    virginianum gramineum
       Common name: Tradescantia virginiana
Translation: The annual, upright Tradescantia
 from Virginia which has a grasslike habit, 3
 petals, and stamens with hairs like spider
 legs, common name Tradescantia of Virginia

But the polynomial system was simplified into a
 two-word or BINOMIAL naming system in the
 mid-16th century to mid-17th century by a
 group of naturalists known as herbalists.
Andrea Cesalpino – first scientist to classify
 plants primarily according to structural
 characteristics, such as their fruits and seeds

Caspar Bauhin – adapted Cesalpino’s method;
 catalogued an extensive list of plants
Animal Classification Advanced

Pierre Belon
 – extensively studied and catalogued birds
-first to use adaptation to habitat to divide
  birds as AQUATIC, WADING, PERCHING, and
  LAND BIRDS and BIRDS of PREY
John Ray – used key characteristics such as the
  shape and size of the birds’ beak to classify
  birds

MID 1700s
Carolus Linnaeus
 Binomial system of nomenclature – similar
 organisms are grouped into a genus, and
 each organism is given a two-word Latin
 name
Carolus Linnaeus
 Binomial nomenclature
    first name – genus name
    second name – adjective describing the
 organism, its geographic location or the
 person who discovered it

Ex. domestic dog
    Canis familiaris
Canis – genus name for the group of animals
 that includes dogs, wolves, coyotes, and
 jackals

familiaris – acts as a descriptor to further
 differentiate the domestic dog from its wild
 cousins
Carolus Linnaeus – also designed the
  HIERARCHICAL classification scheme
 Kingdom
 Phylum
 Class
 Order
 Family
 Genus
 Species
   Development and use of microscopes
    presented new classification problems which
    still relied on a 2-kingdom classification
    system (Plantae and Animalia
 Charles Darwin
  -published “On the Origin of Species” in 1859
  -argued that classification system should
  reflect the history of life; species should be
  related based on their shared ancestry
  -emphasis on taxonomy shifted to:
a. A search for characters which reflected
    genetic (evolutionary) relationships; and
b. The construction of a phylogenetic
    classification scheme
   Phylogenetic – based on genetic, evolutionary
    relationships
                  - which traits are primitive or
    advanced
Ernst Haeckel
-proposed placing the unicellular forms in
 kingdom Protista; placed bacteria within this
 kingdom

1930s
Edouard Chatton – distinguished prokaryotes
 and eukaryotes
Herbert Copeland
-prokaryotes in the 4th kingdom, Monera

1950s
Robert Whittaker
-proposed adding a 5th kingdom, Fungi

1970s
Advances in molecular systematics
Polymerase chain reaction – permits easy
 analysis and comparison of DNA structures

Carl Woese – determined that archaebacteria
 were found to have unique molecular
 structures and physiological characteristics
 from bacteria
           -proposed a 6-kingdom
 classification system
Other scientists propose an 8-kingdom system
   Modern animal taxonomy was established
    using evolutionary systematics and recent
    cladistic revisions.
   PhyloCode
       -new taxonomic system
       -being developed as an alternative to
    Linnaean taxonomy
       -replaces Linnaean ranks with codes that
    denote nested hierarchy of monophyletic
    groups converged by cladograms
   The terms
    “primitive”, “advanced”, “specialized”, and
    “generalized” are used for specific
    characteristics and not for groups as a whole.

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Menchie zoology

  • 1. A. Taxonomy Defined 1. Grouping of organisms - the science of classifying living organisms based on shared features 2. Principles of classification – the practice or principles of classification 3. Study of classification – the study of the rules and practice of classifying living organisms
  • 2. QUESTION: Would you also consider that taxonomy deals with IDENTIFICATION of living organisms? Why or why not?
  • 3. Taxonomy involves: 1. Classification – ranking of groups of organisms in some hierarchical relationship - based on their similarities in their characteristics (genetic relationship, internal and external anatomy, physiology or evolutionary history) 2. Identification – separation of one group from other groups according to their unique characteristics
  • 4. Identifying organisms based on their morphology, anatomy, physiology, cytology, biochemistry and geographic distribution WHAT ARE THE ROLES of TAXONOMISTS and SYSTEMATICISTS? To classify, identify and make a census of the unique characteristics of each species.
  • 5. To reconstruct the evolutionary history of the present classified species based on morphology, anatomy, chemical composition, geographic distribution, breeding behavior, and chromosome number  To determine which traits are advanced (derived in time from primitive traits) or primitive
  • 6.  To discover all species of animals.  To reconstruct their evolutionary relationships.  To classify animals according to their evoutionary relationships.
  • 7. Unexplored areas, only an estimation could be done  Continuous evolution process (diversification)  Continuous extinction  How about in local settings?
  • 8. 300 BC Aristotle – used dichotomies or polar opposites Ex. Animals with blood and without blood (vertebrates and invertebrates) - wrote extensively on both plants and animals but his writings on plants were lost Theophrastus – Aristotle’s pupil and applied his approach to the study of plants in his work “Inquiry into Plants”
  • 9. Theophrastus – subdivided plants based on shape, and into broad categories as trees, shrubs, and herbs Dioscorides – developed a more practical approach - Ex. Medicinal herbs were separated from those used in making perfumes
  • 10. Polynomial System -translation of the common names of organisms into Latin -each species was described in Latin by a sentence limited to 12 words that begins with the genus name -Ex. Spiderwort -Tradescantia ephemerum phalangoides tripetalum non repens virginianum gramineum Common name: Tradescantia virginiana
  • 11. Translation: The annual, upright Tradescantia from Virginia which has a grasslike habit, 3 petals, and stamens with hairs like spider legs, common name Tradescantia of Virginia But the polynomial system was simplified into a two-word or BINOMIAL naming system in the mid-16th century to mid-17th century by a group of naturalists known as herbalists.
  • 12. Andrea Cesalpino – first scientist to classify plants primarily according to structural characteristics, such as their fruits and seeds Caspar Bauhin – adapted Cesalpino’s method; catalogued an extensive list of plants
  • 13. Animal Classification Advanced Pierre Belon – extensively studied and catalogued birds -first to use adaptation to habitat to divide birds as AQUATIC, WADING, PERCHING, and LAND BIRDS and BIRDS of PREY
  • 14. John Ray – used key characteristics such as the shape and size of the birds’ beak to classify birds MID 1700s Carolus Linnaeus Binomial system of nomenclature – similar organisms are grouped into a genus, and each organism is given a two-word Latin name
  • 15. Carolus Linnaeus Binomial nomenclature first name – genus name second name – adjective describing the organism, its geographic location or the person who discovered it Ex. domestic dog Canis familiaris
  • 16. Canis – genus name for the group of animals that includes dogs, wolves, coyotes, and jackals familiaris – acts as a descriptor to further differentiate the domestic dog from its wild cousins
  • 17. Carolus Linnaeus – also designed the HIERARCHICAL classification scheme  Kingdom  Phylum  Class  Order  Family  Genus  Species
  • 18. Development and use of microscopes presented new classification problems which still relied on a 2-kingdom classification system (Plantae and Animalia
  • 19.  Charles Darwin -published “On the Origin of Species” in 1859 -argued that classification system should reflect the history of life; species should be related based on their shared ancestry -emphasis on taxonomy shifted to: a. A search for characters which reflected genetic (evolutionary) relationships; and b. The construction of a phylogenetic classification scheme
  • 20. Phylogenetic – based on genetic, evolutionary relationships - which traits are primitive or advanced
  • 21. Ernst Haeckel -proposed placing the unicellular forms in kingdom Protista; placed bacteria within this kingdom 1930s Edouard Chatton – distinguished prokaryotes and eukaryotes
  • 22. Herbert Copeland -prokaryotes in the 4th kingdom, Monera 1950s Robert Whittaker -proposed adding a 5th kingdom, Fungi 1970s Advances in molecular systematics
  • 23. Polymerase chain reaction – permits easy analysis and comparison of DNA structures Carl Woese – determined that archaebacteria were found to have unique molecular structures and physiological characteristics from bacteria -proposed a 6-kingdom classification system
  • 24. Other scientists propose an 8-kingdom system
  • 25. Modern animal taxonomy was established using evolutionary systematics and recent cladistic revisions.  PhyloCode -new taxonomic system -being developed as an alternative to Linnaean taxonomy -replaces Linnaean ranks with codes that denote nested hierarchy of monophyletic groups converged by cladograms
  • 26. The terms “primitive”, “advanced”, “specialized”, and “generalized” are used for specific characteristics and not for groups as a whole.