1. AIB
PhD Coursework in Life Sciences
Computational Biology
28 September 2013
Dr. Puneet Kacker
www.puneetsclassroom.in
2. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
2
3. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
3
5. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
5
8. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
8
12. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
12
19. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
19
23. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
23
29. AIB
DALI Server
29
Take a Structure
Search the similar structure
available in the PDB
http://ekhidna.biocenter.helsinki.fi/dali_server/
30. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
30
31. AIB
10 Things You Should Remember
1. Data Security on the Web
2. Remember the Server, the Database, and the Program
Version
3. Write Down the Sequence Unique ID
4. Write Down the Program Parameters
5. Alternative Ways to Save Internet Results
6. Use E-Values
7. Make Sure You Can Trust Your Alignment Results
8. Use Different Programs to Verify Borderline Results
9. Avoid the Use of Unpublished Methods!
10. Use Updated Databases
31
34. AIBOutline
Introduction
Literature Databases
Sequence Databases
Structure Databases
Chemical Databases
Tools for Analysis
Things to Remember
Some Useful Tips
34
35. AIB
Smart Apps for Your Smartphone
35
iMolview
By Molsoft
iCut DNA
By EpIPhone Coders'
Guild
EndNote for iPad
By Thomson Reuters
LabTimer
By 0x0c
PubSearch
By deathraypizza
ChemDraw
By PerkinElmer
RCSB PDB Mobile
By Philip Bourne
Molarity
By Sigma-Aldrich
36. AIB
All The Best!
-:Contact:-
Room Number 407, J3 Block
Amity Institute of Biotechnology
Amity University Uttar Pradesh
Noida-201303
pkacker@amity.edu
www.puneetsclassroom.in
www.facebook.com/AIBBIC