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Fundamental Research:
 Biotechnology
                                                                                                            NATIONAL
                                                                                                                   SECURITIES
 February 1, 2010                                                                                          Established 1947, Member FINRA/SIPC




Soligenix                                   Investment Thesis
                                            We are initiating coverage of Soligenix with a Buy rating. We see the company’s
      :
Ticker:                                     lead product, orBec® (oral belcomethasone dipropionate or BDP) as a low risk,
                                            high reward proposition in acute, prophylactic and chronic GI GvHD (graft-versus-
SNGX                                        host disease), as well as for the prevention of acute radiation enteritis (cancer
                                            patients). The localized (oral) administration of this corticosteroid (through a
Current Price:                              proprietary drug release formulation) has demonstrated efficacy in prior clinical
$0.24                                       trials. The company is now running a confirmatory Phase 3 trial with data
                                            expected in the first half of 2011. We view the outcome of this trial as low risk
Recommendation:                             given its design and the prior clinical history demonstrated with orBec®.

BUY                                         Highlights
                                            orBec® for GI GvHD: Now in a confirmatory Phase 3 trial: orBec® is an oral,
Price Target: $1.50                         locally acting therapy tailored to treat the gastrointestinal (GI) manifestations of
                                            GVHD. We believe the prior clinical record (Phase 2 and Phase 3) have set the
Time Frame:                                 stage for a positive outcome with the current pivotal trial.
12 Months
                                            Is there Clinical Risk? In our opinion this has been minimized. Based on data
                                            from the prior Phase 3 study of orBec®, the upcoming confirmatory Phase 3
                                            clinical trial will be a highly powered, double-blind, randomized, placebo-
Jason Kolbert                               controlled, multi-center trial with a target enrollment of 166 patients. The primary
(212) 417-8287
jkolbert@nationalsecurities.com             endpoint on the new study is the treatment failure rate at study day 80. This
                                            endpoint was successfully measured as a secondary endpoint (p-value 0.005) in
                         LAST       $0.24
                                            the previous Phase 3 study which enrolled 129 patients. This clinical trial has now
                    ANNHIGH         $0.38   begun with results expected in the first half of next year.
                     ANNLOW         $0.09
   Shares O/S-Diluted (model)     185,687
    Market Capitalization (mln)       $44
                                            Soligenix has reached agreement on the design of the current confirmatory Phase
100-Day Average Daily Volume          453   3 clinical trial evaluating orBec® for the treatment of acute GI GVHD with both the
                                            FDA and EMEA. The agreement with the FDA was gained via the FDA's Special
                                            Protocol Assessment (SPA) procedure. An agreement via the SPA procedure is
                                            an agreement with the FDA that a Phase 3 clinical trial design (e.g., endpoints,
                                            sample size, control group and statistical analyses) is acceptable to support a
                                            regulatory submission seeking new drug approval. The agreement with the EMEA
                                            was obtained via the procedure for requesting Protocol Assistance.

Source:BigCharts.com
                                            Is GvHD an Unmet medical Need? Acute GI GvHD is a debilitating and painful
                                            disease and constitutes an unmet medical need. It is a common disorder among
                                            immunocompromised cancer patients and occurs after these patients receive
                                            hematopoietic cell transplantation (HCT). Unlike organ transplants where the
                                            patient's body may reject the organ, in GvHD it is the donor cells that begin to
                                            attack the patient's (host's) body, most frequently the gastrointestinal tract, liver
                                            and skin. Patients with mild-to-moderate GI GvHD typically develop symptoms of
                                            anorexia, nausea, vomiting and diarrhea. If left untreated, GI GVHD can progress
                                            to ulcerations in the lining of the GI tract, and, in its most severe form, can be
                                            fatal. Current treatments include immunosuppresive therapies which themselves
                                            have a lot of side-effects and which can be suppressive to the graft itself. The idea
                                            of localized administration of steroid keeps systemic exposure low while delivering
                                            the drug in a targeted manner where it’s needed the most.




         National Securities Corporation                     Please refer to important disclosures at the end of this document
         120 Broadway, 27th Floor
         New York, NY 10271
         www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010
   Beyond Acute GvHD: Soligenix currently has an NIH supported grant to study orBec®’s
   use in the prevention of Acute GvHD. In addition, the company is also studying orBec® for the
   treatment of chronic GI GvHD. The active ingredient in orBec®, belcomethasone dipropionate or
   BDP, is also in early stages of development for radiation enteritis (SGX201), where it has been
   granted fast track status and as SGX203 (Crohn’s Disease) where it has orphan status in the
   pediatric Crohn’s population.

   What is the Size of the Market Opportunity for orBec®? We believe the market opportunity in
   GvHD in all of its various forms represents a significant opportunity between $150 and $300
   million, with a 35% royalty back to Soligenix for North America (half the worldwide GvHD
   marketplace). These estimates do not include the potential in radiation enteritis (SGX-201) or in
   Crohn’s Disease (SGX-203) which is substantially larger than GvHD.

   Soligenix is developing orBec® using the 505(b)(2) regulatory pathway: We view this as a
   lower risk approach to re-tasking already approved drugs in new indications. In this case, orBec®
   is formulated for oral administration as a single product consisting of two tablets: one tablet is
   intended to release BDP in the proximal portions of the GI tract, and the other tablet is intended to
   release BDP in the distal portions of the GI tract. BDP has been marketed in the U.S. and
   worldwide since the early 1970s as the active pharmaceutical ingredient in nasal sprays and in
   metered-dose inhalers for the treatment of patients with allergic rhinitis and asthma. Its properties
   and safety profile are well known.

   Special Protocol Assessment (SPA): Soligenix has negotiated a “SPA” with the FDA and has a
   similar agreement with the EMEA. Positive results in the current confirmatory Phase 3 study
   should lead to market approval in both the US and all 27 EU member states. We note that
   Soligenix has not yet partnered orBec® in the EU or ROW. In our model we assume a
   partnership will occur with 35% royalty back to Soligenix. We do not, however, project any
   partnership milestones in Europe (for the sake of conservatism).

   Orphan Drug: orBec® has been granted orphan status in the US for acute and chronic GI
   GvHD, as well as the prevention of acute GVHD. orBec® also has orphan status in the EU
   for GI GvHD. In terms of patent protection, Soligenix has an issued patent on the treatment
   and prevention of GI GVHD through 2019. Orphan status provides protection in the US for
   seven(7) years and in Europe for ten (10) years (post market exclusivity).

   Fast Track Designation: orBec® has been granted fast track designation. From the FDA
   website: “Fast track is a process designed to facilitate the development, and expedite the review
   of drugs to treat serious diseases and fill an unmet medical need. The purpose is to get
   important new drugs to the patient earlier. Fast Track addresses a broad range of serious
   diseases”. Once a drug receives Fast Track designation, early and frequent communication
   between the FDA and a drug company is encouraged throughout the entire drug development
   and review process. In our discussions with Soligenix management, we find that this is the case.
   This frequent communication should, in effect, lower risk around trial design and outcomes and
   lead to an earlier drug approval.

   Sigma-Tau is the Partner: Soligenix licensed rights for North American and Mexico for orBec®
   and oral BDP to Sigma-Tau Pharmaceuticals, Inc. Soligenix receives a 35% royalty on all sales,
   and stands to receive $9 million in additional milestones over the next several years. Sigma-Tau
   will cover the costs of commercialization. Soligenix maintains manufacturing rights.




   National Securities Corporation           Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010
   The Biodefense Platform: Soligenix's biodefense activities are focused on developing
   biomedical countermeasures pursuant to the Project BioShield Act of 2004. Specifically,
   Soligenix’s lead program is a bioengineered vaccine designed to protect against the deadly
   effects of ricin toxin, which is considered a serious bioterrorism threat. There may also be
   additional utility in this platform in more traditional vaccines, such as flu.

   Soligenix is the world leader in ricin toxin vaccine research. Soligenix has achieved positive
   Phase 1 clinical trial results with RiVax™, demonstrating that the vaccine is well tolerated and
   induces antibodies in humans that neutralize the ricin toxin, recently shown to be 2,000-fold more
   toxic than previously thought. Soligenix can also manufacture RiVax™ at scale and under cGMP
   conditions. Having met these clinical and manufacturing conditions, RiVax™ is eligible for
   government procurement orders. There are no FDA-licensed vaccines or therapeutics against
   ricin toxin.

   Drug Delivery Platform: Soligenix has also developed a proprietary Lipid Polymer Micelle
   (LPM™) drug delivery technology. This technology is currently being used to enhance the oral
   delivery of leuprolide for the treatment of prostate cancer and endometriosis.

   Company Background
   Soligenix is a late-stage biopharmaceutical company with a significant product in orBec®,
   currently in a confirmatory Phase 3 pivotal trial for acute gastrointestinal graft-versus-host disease
   (GI GvHD). The development road for orBec® has been long and the company’s trial and
   regulatory expertise has grown dramatically since CEO Christopher J. Schaber, PhD took over
   operations. Soligenix has two (2) strategic areas of focus: 1. A therapeutics platform dedicated to
   the development of products for life-threatening conditions such as GI GvHD and Cancer; 2. A
   biodefense platform to develop vaccines for military and civilian applications. We conducted an
   in-depth review on the outlook for these programs, the catalysts and associated risks, and the
   commercial opportunities ahead. We conclude that Soligenix is undervalued relative to the
   opportunities and pipeline potential of the company.

   The Biotherapeutics Platform: orBec® (oral beclomethasone dipropionate or BDP) is a potent,
   locally acting corticosteroid being developed for the treatment, as well as the prevention, of acute
   and chronic gastrointestinal Graft-versus-Host disease (GI GvHD). GI GvHD is a common and
   potentially life-threatening complication of allogeneic hematopoietic cell transplantation (HCT).
   orBec® fits ideally into a recent trend we have observed: a re-tasking theme that finds new
   life for existing therapeutics. A common element in this re-tasking theme is the 505(b)(2)
   pathway which has certain inherent advantages: typically a faster pathway to marketplace, which
   allows the sponsor to claim an additional period of market exclusivity (three or five years),
   depending on the extent of change to the previously approved drug.

   orBec® (oral BDP) is designed to be an oral, locally acting therapy tailored to treat the GI
   manifestation of GvHD and reduce the need for systemic immunosuppressive drugs (e.g.,
   prednisone). BDP is a highly potent, topically active corticosteroid that has a local effect on
   inflamed tissue. It is formulated as a single product consisting of two tablets: one intended to
   release BDP in the upper portions of the GI tract, and the other in the distal portions.




   National Securities Corporation           Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   The Biotherapeutics Platform: (continued):
   orBec® is currently in a confirmatory pivotal trial with a Special Protocol Assessment (SPA)
   agreement in place with the FDA for Acute GI GvHD. It is also being evaluated in an NIH-
   supported Phase 2, randomized, double-blind, placebo-controlled clinical study for the prevention
   of acute GvHD. In addition, the company plans to initiate a Phase 2 study for the treatment of
   chronic GI GvHD in 2010. We explore each of these markets and the inter-relations that exist
   between them. Given orBec® or oral BDP’s utility in GI disease, Soligenix is also investigating its
   use for the prevention and/or treatment of other GI disorders that are also characterized by
   inflammation. These include its utility in radiation enteritis (SGX201) and Crohn’s Disease
   (SGX203), and, on the BioDefense platform, its utility as a countermeasure against radiation
   injury (SGX202).


   Exhibit 1: Upcoming Potential Catalysts by Time Sequence
    Product            Indication                             Event                                                                        Timing     Significance
    orBec®             GVHD Acute                             FDA Grants SPA for Phase III trial                                          completed
    orBec®             GVHD (all)                             Sigma Tau Partnership for North American - 35% Royalty to Soligenix         completed
    orBec®             GVHD Acute                             EMEA Agreement of Phase III trial                                           completed
    orBec®             GVHD Acute                             Phase III Trial Start                                                       completed
    SGX-201            Radiation Enteritis                    Fast Track Status Granted                                                   completed
    SGX-201            Radiation Enteritis                    Initiate Phase I/II Radiation Enteritis Starts (4 centers)                  completed
    RiVax™             Ricin Vaccine                          Complete Phase 1a trial (safety in man); Blood titers efficacious in mice   completed
    orBec®             GVHD - Prevention                      US PII Prevention Study - Completes & Reports                               1H-2010             ++
    orBec®             GVHD (all)                             EU Partnership for orBec®                                                   1H-2010             ++
    RiVax™             Ricin Vaccine                          Complete Phase 1b trial                                                     1H-2010              +
    orBec®             Chronic GVHD                           Initiate Phase II Study Chronic GVHD                                        2H-2010              +
    SGX-202            Radiation Injury                       Animal Efficacy Studies                                                     2H-2010              +
    LPM                Leuprolide (prostate cancer)           Initiate Phase I Pka Study: Proof of Concept in Man                         2H-2010              +
    orBec®             GVHD - Prevention                      US PIII Pivotal Program Begins                                              1H-2011              +
    orBec®             GVHD Acute                             Phase III Trial Completes & Reports                                         1H-2011            +++
    orBec®             GVHD Acute                             NDA Filed (class II Amendment to existing NDA - 6 mos review)               2H-2011            +++
    SGX-201            Radiation Enteritis                    Phase I/II Radiation Enteritis Completes & Reports                          1H-2011             ++
    LPM                Leuprolide (prostate cancer)           Proof of Concept in Man : Report Data: ≥15% oral bioavailability in man     2H-2011              +
    SGX-203            Crohn's Disease Program                Phase II Study                                                              1H-2011             ++
    RiVax™             Ricin Vaccine                          Begin PII in Man: (Safety) & Efficacy (blood titers) in Animal Model        1H-2011              +
    SGX-201            Radiation Enteritis                    Pivotal Study Begins                                                        1H-2012              +
    LPM                Leuprolide (prostate cancer)           Partnership Deal for "LPM Platform"                                         1H-2012             ++
    orBec®             GVHD Acute                             NDA Approved                                                                1H-2012             ++
    orBec®             GVHD - Chronic                         Complete Phase II Study Chronic GVHD                                        1H-2012            +++
    orBec®             GVHD - Acute                           US GVHD Acute Launch                                                        1H-2012              +
    orBec®             GVHD - Acute                           EU GVHD Acute Launch                                                        2H-2012              +
    RiVax™             Ricin Vaccine                          Report PII Data                                                             2H-2012              +
    orBec®             GVHD - Prevention                      Complete & Report Pivotal Prevention Study                                  2H-2012             ++
    orBec®             GVHD - Chronic                         US GVHD Chronic Pivotal Program                                             2H-2012              +
    orBec®             GVHD - Prevention                      US GVHD Prevention Launch                                                     2013               +
    orBec®             GVHD - Prevention                      EU GVHD Prevention Launch                                                     2013               +
    orBec®             GVHD - Chronic                         US GVHD Chronic Completes & Reports                                           2014              ++
    orBec®             GVHD - Chronic                         US GVHD Chronic Launch                                                        2014               +
    orBec®             GVHD - Chronic                         EU GVHD Chronic Launch                                                        2014               +
    SGX-201            Radiation Enteritis                    Pivotal Study Completes & Reports                                             2014               +
    RiVax™             Ricin Vaccine                          BARDA-DOD- HHS Review: Procurement                                            2014              ++
    SGX-201            Radiation Enteritis                    Approval & Launch                                                             2015              ++
    Stock Significance Scale: + of moderate importance; ++ higher level; +++ highly
    Source:National Securities Forecasts and Company reports.




   National Securities Corporation                                              Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   Exhibit 2: Upcoming Potential Catalysts by Product
    Product             Indication                            Event                                                                                  Timing       Significance
    orBec®              GVHD Acute                            FDA Grants SPA for Phase III trial                                                    completed
    orBec®              GVHD (all)                            Sigma Tau Partnership for North American - 35% Royalty to Soligenix                   completed
    orBec®              GVHD Acute                            EMEA Agreement of Phase III trial                                                     completed
    orBec®              GVHD Acute                            Phase III Trial Start                                                                 completed
    orBec®              GVHD Acute                            Phase III Trial Completes & Reports                                                   1H-2011              +++
    orBec®              GVHD Acute                            NDA Filed (class II Amendment to existing NDA - 6 mos review)                         2H-2011              +++
    orBec®              GVHD Acute                            NDA Approved                                                                          1H-2012               ++
    orBec®              Chronic GVHD                          Initiate Phase II Study Chronic GVHD                                                  2H-2010                +
    orBec®              GVHD - Chronic                        Complete Phase II Study Chronic GVHD                                                  1H-2012              +++
    orBec®              GVHD (all)                            EU Partnership for Orbec®                                                             1H-2010               ++
    orBec®              GVHD - Acute                          US GVHD Acute Launch                                                                  1H-2012                +
    orBec®              GVHD - Acute                          EU GVHD Acute Launch                                                                  2H-2012                +
    orBec®              GVHD - Prevention                     US PII Prevention Study - Completes & Reports                                         1H-2010               ++
    orBec®              GVHD - Prevention                     US PIII Pivotal Program Begins                                                        1H-2011                +
    orBec®              GVHD - Prevention                     Complete & Report Pivotal Prevention Study                                            2H-2012               ++
    orBec®              GVHD - Prevention                     US GVHD Prevention Launch                                                               2013                 +
    orBec®              GVHD - Prevention                     EU GVHD Prevention Launch                                                               2013                 +
    orBec®              GVHD - Chronic                        US GVHD Chronic Pivotal Program                                                       2H-2012                +
    orBec®              GVHD - Chronic                        US GVHD Chronic Completes & Reports                                                     2014                ++
    orBec®              GVHD - Chronic                        US GVHD Chronic Launch                                                                  2014                 +
    orBec®              GVHD - Chronic                        EU GVHD Chronic Launch                                                                  2014                 +
    SGX-201             Radiation Enteritis                   Fast Track Status Granted                                                             completed              +
    SGX-201             Radiation Enteritis                   Initiate Phase I/II Radiation Enteritis Starts (4 centers)                            completed              +
    SGX-201             Radiation Enteritis                   Phase I/II Radiation Enteritis Completes & Reports                                    1H-2011               ++
    SGX-201             Radiation Enteritis                   Pivotal Study Begins                                                                  1H-2012                +
    SGX-201             Radiation Enteritis                   Pivotal Study Completes & Reports                                                       2014                 +
    SGX-201             Radiation Enteritis                   Approval & Launch                                                                       2015                ++
    LPM                 Leuprolide (prostate cancer)          Initiate Phase I Pka Study: Proof of Concept in Man                                   2H-2010                +
    LPM                 Leuprolide (prostate cancer)          Proof of Concept in Man : Report Data: ≥15% oral bioavailability in man               2H-2011                +
    LPM                 Leuprolide (prostate cancer)          Partnership Deal for "LPM Platform"                                                   1H-2012               ++
    RiVax™              Ricin Vaccine                         Complete Phase 1a trial (safety in man); Blood titers efficacious in mice             completed              +
    RiVax™              Ricin Vaccine                         Complete Phase 1b trial                                                               1H-2010                +
    RiVax™              Ricin Vaccine                         Begin PII in Man: (Safety) & Efficacy (blood titers) in Animal Model                  1H-2011                +
    RiVax™              Ricin Vaccine                         Report PII Data                                                                       2H-2012                +
    RiVax™              Ricin Vaccine                         BARDA-DOD- HHS Review: Procurement                                                      2014                ++
    SGX-202             Radiation Injury                      Animal Efficacy Studies                                                               2H-2010                +
    SGX-203             Crohn's Disease Program               Phase II Study                                                                        1H-2011               ++
    Stock Significance Scale: + of moderate importance; ++ higher level; +++ highly
    Source:National Securities Forecasts and Company reports.




   Exhibit 3: Soligenix development pipeline
                                                                                                                  Development Stage
                              Product
                                                                           Preclinical                        Phase I            Phase II             Phase III          Market
    Orbec® GVHD Acute (fast track & orphan)
    Orbec® GVHD Prophylaxis (orphan)
    Orbec® GVHD Chronic (orphan)
    SGX-201 Radiation Enteritis (Fast Track)
    SGX-203 Crohn's Disease (orphan)
    LPM Platform - DD Program
    Source: Soligenix




   Exhibit 4: Soligenix BioDefense pipeline
                                                                                                        Development Stage
                           Product
                                                                 Proof of Concept               Animal Efficacy       IND Filing          Phase 1        Phase 2/3        BLA Filing
    RiVax™ (Ricin Vaccine) FDA Animal Rule
    SGX-202 Radiation Injury FDA Animal Rule
    Source: Soligenix




   National Securities Corporation                                              Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010
   Financials: We estimate that Soligenix currently has approximately $7 million in cash and
   equivalents or about a year’s cash. In February of last year Soligenix out-licensed North
   American rights of orBec® to Sigma-Tau. The company also raised an additional $4.4 million via
   a common stock/warrant financing. In the initial deal, Soligenix received an initial payment of $6
   million with another $9 million in possible milestones over the next several years. Soligenix has
   since achieved the first $1 million milestone under the agreement with the recent initiation of the
   confirmatory phase 3 clinical trial. Soligenix is also entitled to a 35% royalty (inclusive of drug
   manufacture) on all North American and Mexico sales, and retains manufacturing rights to
   orBec®. Sigma-Tau will assume all commercialization costs in North America. We note that the
   company retains all rights to orBec® outside North America. Soligenix, based on these estimates,
   has about a year’s worth of capital. However, we believe the company is in a strong position to
   sign additional partnerships for other geographies to generate non-dillutive financing. Lastly, as
   we will examine, Soligenix has received capital through multiple grant awards which support
   some of its bioterapeutics research and all of its BioDefense research.

   Bull Case: Soligenix is undervalued as the potential for orBec® is underappreciated. The prior
   trials (Phase 2 & 3) and the current confirmatory Phase 3 trial have effectively de-risked the
   outcome. The current confirmatory trial is highly powered (90%) and of the same design (drug,
   dose, patient population and expected control group outcomes) as the prior pivotal trial (powered
   at 80%) The primary endpoint: Treatment failure rate at Study Day 80, was highly statistically
   significant in the previous Phase 3 trial with p-value of 0.005. Market factors suggest orBec® can
   acquire significant penetration in the GvHD marketplace as the first approved drug for GI GVHD.
   The GvHD market is concentrated and closely-knit and information is disseminated rapidly among
   the Key Opinion Leaders (KOL’s). Beyond GvHD (Acute, Prevention and Chronic) a wide range
   of other indications, such as Radiation Enteritis and Crohn’s Disease exists. North American
   rights are partnered with Sigma-Tau, EU and rest of world, however, are open for partnership.
   Soligenix also has an attractive drug delivery platform with Lipid Polymer Micelles (LPM) platform
   technology and a very active BioDefense program led by RiVax™ (Ricin Toxin Vaccine). All this,
   with a market capitalization of under $50 million.

   Bear Case: orBec® is similar to generic enteric-coated budesonide and other steroids which are
   cheaply available and used today off-label to treat GvHD. orBec® will not be able to achieve the
   price we project even with the pharmacoeconomic justifications, as hospitals will continue to use
   cheaper steroids to treat GvHD. Bears may also argue that the clinical risk is being
   underestimated in the current orBec® confirmatory trial. Soligenix has given away too much of
   the economics in the license deal with Sigma-Tau. The GvHD marketplace is small and treatment
   paradigm is shifting away from BMT toward new biologic therapies; as such, the market is
   becoming smaller, not larger, over time. The treatment paradigm in GvHD is not likely to shift
   towards prevention and that market opportunity is over-estimated. The market opportunity in
   chronic is unique in that these patients have a different set of immunological problems. As such,
   the clinical risk that a true benefit can be demonstrated in these patients is high. The remaining
   opportunities at the company, include the drug delivery platform (Lipid Polymer Micelle -LPM™)
   which is unproven and the company lacks the resources to continue to develop this platform.
   Lastly, the biodefense platform deserves minimal value as the company is totally dependent on
   the US Government as a client. Prior experiences with other companies suggest that the road to
   generate meaningful profit Is an arduous and difficult one.




   National Securities Corporation          Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   Our Take: We know that while cheaper steroids are a potential commercial threat, multiple
   examples of therapeutics that were re-tasked exist in other marketplaces, and once on label, off-
   label use of cheap generics was eliminated. In addition, the two tablet system of immediate and
   time release makes orBec® unique in treating this disease. We see orBec® as the key driver for
   Soligenix. Based on our analysis of the Phase 2 and Phase 3 trials, we see low clinical risk in the
   current Phase 3 confirmatory trial. This trial uses a favorable endpoint and greater statistical
   powering, while keeping all other variables the same. As such, we see a high likelihood of
   success. The best case scenario for Soligenix is a positive outcome in the current confirmatory
   Phase 3, Acute GI GvHD trial, followed by positive outcome in the Phase 2 NIH sponsored
   prevention trial. Mechanistically, we believe a good outcome in acute GvHD does set the stage
   for off- label use in the prevention and chronic marketplaces. Beyond orBec® in GvHD we see
   tremendous potential in other GI diseases (Crohn’s), Radiation Enteritis and on the BioDefense
   side, Radiation Injury (orBec® as a counter-measure). We view the Biodefense and LPM
   platforms as creating a positive upside option for investors. On the BioDefense side, little value is
                        TM
   ascribed for RiVax and/or the vaccine development platform (vaccines stable at room
   temperature), but investors should note that Soligenix has recently received a $9.4 million dollar
   development award to support the heat stabilization platform.

   What is GvHD? Graft-versus-host disease is a frequent complication of allogeneic hematopoietic
   cell transplantation (HCT). In GvHD, the donor's bone marrow or stem cells attacks the patient's
   organs and tissues, impairing his ability to function, and increasing the patient's susceptibility to
   infection. Approximately 50 per cent of patients undergoing an allogeneic HCT with a related
   HLA-matched donor develop GI GvHD. GvHD is not usually a complication of autologous BMTs
   although there is an approximate 8% incidence after these procedures as well. GvHD is often
   thought of as a single disease. In fact, it is two diseases: acute GvHD and chronic GvHD.
   Patients may develop one, both or neither. Acute and chronic GvHD are similar in their
   symptoms, but different in their clinical signs and time of onset. (Clinical signs are the result of
   physical exams, x-rays or lab tests that confirm the existence and extent of a disease.) (See
   Exhibit 5.)

   GvHD can be a temporary inconvenience or a serious, life-threatening disease. Older
   transplantation patients are more likely to develop GvHD than younger patients. The incidence
   and severity of GVHD is also higher among patients whose bone marrow donor or stem cells are
   unrelated or not perfectly matched. The symptoms of GvHD are many and varied, and the list
   may at first be overwhelming.

                   pp
   Exhibit 5: A normal upper GI Mucosa (left side) and one being attacked (Acute GvHD)




   Source: Soligenix




   National Securities Corporation           Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010
   How is GvHD treated today? There are no approved therapies to prevent or treat GvHD, but
   there are many off-label therapies used to treat the condition. These include the use of
   immunosuppressive drugs such as cyclosporine (alone or in combination with systemic steroids,
   namely prednisone) and methotrexate prior to the transplant as a preventive measure. These
   have proven effective in reducing the severity, but not necessarily the incidence, of GvHD. They
   may be administered for several months post-transplant, particularly if acute GvHD progresses to
   Stage II, or if the patient develops chronic GvHD. These therapeutics weaken the ability of the
   donor's immune system to launch an attack against the patient's organs and tissues and they
   have side effects. Cyclosporine can be very toxic to the kidneys. It can cause an increase in hair
   growth on the body, especially facial hair on women, and, on rare occasions, can result in
   neurological problems such as seizures, confusion, anxiety, and changes in thought processes.
   Methotrexate may cause inflammation of the mouth, nose and/or throat. Side effects of
   prednisone include weight gain, fluid retention, elevated blood sugar level, insomnia, mood
   swings and/or confused thinking. One of the key concerns with using prednisone is that it
   suppresses the graft (bone marrow and stem cell transplantation) itself. Additionally, and,
   perhaps, most dangerously, prednisone suppresses the immune system and leaves the body
   open to opportunistic infections. Multiple studies have shown the positive correlation between
   infection rates and increasing doses of prednisone.

   Exhibit 6: orBec® - A Targeted Approach to GI GvHD. orBec® is delivered in a two-pill system.
   Each tablet contains 1 mg BDP, 1 Immediate Release (IR) tablet designed to release in the upper
   GI tract and 1 Enteric Coated (EC) tablet designed to release in the lower GI tract. The total dose
   is only 8 mgs BDP per day. We believe that by comparison to traditional systemic steroids
   regimens (prednisone), the BDP doses are substantially lower and, thus, safer.




    Diagram showing dispersion of
                                                                                      Diagram showing dispersion
    IR tablet in the stomach
                                                                                      of IR and EC tablets in small
                                                                                      intestine


   Source: Soligenix


   Clinical Data – orBec® is currently in a confirmatory Phase 3 trial. In January 2007, Soligenix (at
   that time called DOR BioPharma) reported results from the first pivotal Phase 3 trial. The trial was
   129 patient, randomized, double-blind, placebo-controlled, and multicenter. In that trial, orBec®
   showed statistically significant results, with reductions of risk of treatment failure and mortality
   rates compared to control (placebo). Unfortunately, the trial’s primary endpoint was time to
   treatment failure through day 50 where statistical significance was not achieved (p=0.1177), but a
   positive trend established. A secondary endpoint of time to treatment failure through day 80 was
   met (p=0.0226). Additionally, with the secondary endpoint of mortality through day 200 post
   transplant, orBec® did show a statistically significant improvement (p=0.014). This statistical
   improvement was maintained at one year post randomization (p=0.04), demonstrating that
   orBec® not only had an effect on controlling acute GI GvHD, but also had a positive impact on
   patients’ underlying cancer.




   National Securities Corporation          Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   Exhibit 7: orBec® - Previous Phase 3 Study Results
            Key Results                    orBec n=62        Placebo n=67                   p-value
    Time to Treatment Failure
    through Day 50 (primary
    endpoint)                                                                                0.118
    Treatment Failure Rate at
    Day 50                                  18 (31%)             30 (48%)                    0.051
    Time to Treatment Failure
    through Day 80                                                                           0.023
    Treatment Failure Rate at
    Day 80                                  22 (39%)             39 (65%)                    0.005
    Mortality Rate at 200 Days                  5
    Post-Transplant                           (8%)               16 (24%)                    0.014
   Source: Soligenix



   Exhibit 8: orBec® - Kaplan-Meier Survival Curves: Time to Treatment Failure through Day 80
   p=0.0226. The curve shows a clear separation between control arm and ?




   Source: Hockenbery et al. 2007. Blood




   National Securities Corporation              Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010
   Exhibit 9: orBec® - Comprehensive Mortality Data
                                                                                                             Percentage
        Long-Term Survival                                                          p-value orBec            reduction in
             Outcomes                         orBec              Placebo             vs. placebo               mortality
    Mortality Rate at 200 days
    post transplant - Pivotal
    Phase 3 study                             5 (8%)             16 (24%)                  0.013                  66%
    Mortality Rate at 200 days
    post transplant - Prior
    Phase 2 study                            3 (10%)              6 (21%)                  0.18                   55%
    Mortality Rate among
    mismatched donors at 200
    days post transplant Pivotal
    Phase 3 study                             1(4%)              10 (42%)                  0.02                   94%
    Mortality Rate at 1 year post
    randomization - Pivotal
    Phase 3 study                            18 (29%)            28 (42%)                  0.04                   46%
    Mortality Rate at 1 year post
    randomization - Prior
    Phase 2 study                            6 (19%)              9 (31%)                  0.26                   45%
    Mortality Rate at median
    time periods at 3.5 years –
    Both studies combined                    37 (40%)            49 (51%)                  0.03                   37%
    Source: Hockenbery et al. 2007. Blood


   What is the Clinical Development Path Forward for orBec®? A Special Protocol Assessment
   (SPA) for confirmatory, pivotal Phase 3 clinical trial has been cleared by FDA. This confirmatory
   trial is highly powered and of similar design to the previous Phase 3 study with a targeted
   enrollment of approximately 166 patients, (powered at 90% to detect the treatment failure rate at
   day 80), which was highly statistically significant in the previous Phase 3 trial (p-value of 0.005).
   This provides us with a strong basis for our confidence in the efficacy of the outcome of the
   current confirmatory trial. In addition, there is EMEA agreement on the Phase 3 protocol for
   potential EU approval. The trial has been initiated, and completion is targeted for 1H 2011.

   Exhibit 10: Confirmatory Phase 3 Replicates Prior Study: Improvements in design include
   changing the primary endpoint to time to treatment failure at day 80 (achieved in the prior trial
   with a p-value of 0.005) which should increase the likelihood of success. Other key factors; drug,
   dose, patient population and expected control group outcomes have remained constant from the
   prior Phase 3 study.



                                                      Prior Phase 3                           Confirmatory Phase 3
                 Number of Sites                         Multicenter                               Multicenter
               Number of patients                           129                                       166
                                             Allogenic transplant patients with
                 Patient Population                 Grade 2 GI GvHD                                   Same
                          Powering                         80%                                         90%
                                                                                            Treatment Failure Rate at
                                            Time to Treatment Failure Through               Day 80 (p-value of 0.005 in
                   Primary endpoint                      Day 50                                  prior Phase 3)
                                    8 mg beclomethasone / 1mg BDP
                Delivered dose and per table / 2 tablets 4 times per day /
                 frequency of dose                 50 days                                                Same
                                    2 Randomized groups: High dose
                                    prednisone for 10 days with rapid
                                     taper with 50 days on placebo or
                            Design                   drug                                                 Same
   Source: Soligenix


   National Securities Corporation                     Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   Soligenix – Intellectual Property
   Orphan Drug: orBec® has been granted orphan status in the US for treatment of acute and
   chronic GI GvHD, as well as for the prevention of acute GvHD. orBec® also has orphan status in
   the EU for GI GvHD. In terms of patent protection, Soligenix has an issued patent on the
   treatment and prevention of GI GvHD through 2019. Orphan status provides protection in the US
   for seven (7) years and in Europe for ten (10) years (post market exclusivity). Orphan status
   should extend patent protection for orBec® in the prevention markets in the EU through 2023,
   and in the US / EU chronic marketplace through 2020, 2024 respectively.

   Model Assumptions: orBec® : In Figures 11 and 12 we present annual and quarterly sales
   projections for orBec® in the Acute, US and European markets, in the Prevention, US and
   European markets and in the Chronic, US and European markets for GvHD.

   We have built into these models several assumptions that are critical to the Soligenix story.

         1. We assume that the size of the annual allogenic stem cell transplant marketplace in the
            US is approximately 10,000 patients per year and is growing at just over 3% per year.
            Approximately 50% of these patients will develop acute GvHD, typically within the first
            100 days of treatment.
         2. Prevention versus Acute GvHD. A critical element in our thesis is our position that the
            treatment paradigm for GvHD will rapidly shift from treating acute patients to prevention.
            As such, the prevention market essentially cannibalizes the acute marketplace. Our
            thesis is based on conversations with thought leaders and market research data that
            Soligenix’s partner, Sigma-tau, has performed. The driving force behind prevention will
            be a combination of the benign nature of orBec® (small dose, local delivery) versus
            alternative treatments such as methotrexate, cyclosporine or prednisone.
         3. Market Share Penetration. We assume a modest penetration rate of 4% in the acute
            marketplace (beginning in 2012), versus a much more rapid penetration in the prevention
            marketplace (beginning in 2H-2013) which rises to 66% by 2016. We have noted that in
            the US, 15 centers represent more than half of all the transplants, so market penetration
            can occur rapidly as key opinion leaders adopt a new treatment regimen.
         4. We assume the European marketplace will follow the US market with approximately a
            year’s lag time. We assume US pricing in the Acute GvHD marketplace of $15,000 base
            cost of therapy with annual price increases, and assume that EU pricing will be
            approximately 75% of US pricing. Prevention pricing is modeled at $20,000 based on 80
            days of therapy) versus 50 days in Acute. In the chronic marketplace, we assume a
            course of therapy of between 2 and 50 days, or $30,000 annual cost of therapy.
         5. Pricing assumptions have been based on our discussions with Soligenix management,
            and our understanding of the pharmaco-economic value that orBec® brings to the over-
            all cost of treating transplant patients. It is critical to note that some may argue that there
            is some treatment today off label with other oral steroids such as budesonide which is
            generically available at a cost of a few dollars per day. We believe the combination of
            orBec’s® novel two pill deliver system and an approved label will eliminate the use of
            cheaper non approved oral steroids. There are a number of examples of this dynamic
            occurring in the marketplace.
         6. We assume a 35% royalty will be paid to Soligenix from partner Sigma-Tau and we
            further assume a 35% royalty to Soligenix for European sales based on a new
            partnership. We have not included any other milestones or upfront payments for
            European rights to be conservative in our model assumptions.
         7. We have not included any sales projections outside of the European and US
            marketplaces. Please see our models for detailed forecasts presented in Exhibits 11 and
            12.




   National Securities Corporation             Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   SGX201 (Radiation Enteritis): SGX201 (oral beclomethasone dipropionate – BDP) is in
   development for the treatment of radiation enteritis, a side effect of radiation therapy used to treat
   certain cancers which involve treatment to the abdomen, pelvis or rectum. During delivery of
   treatment, some level of radiation is also delivered to healthy tissue, including the bowel. This can
   result in acute and chronic toxicities. The large and small bowel are very sensitive to radiation.
   The larger the dose of radiation, the greater the damage to normal bowel tissue. Radiation
   enteritis is a condition in which the lining of the bowel becomes swollen and inflamed during or
   after radiation therapy to the abdomen, pelvis or rectum. Most tumors in the abdomen and pelvis
   need large doses of radiation, and almost all patients receiving radiation to the abdomen, pelvis
   or rectum will show signs of acute enteritis.

   Patients with acute enteritis may experience nausea, vomiting, abdominal pain, diarrhea and
   bleeding, among other symptoms. Some patients may develop severe dehydration and require
   hospitalization. With diarrhea, the gastrointestinal tract does not function normally, and nutrients
   such as fat, lactose, bile salts, and vitamin B12 are not well absorbed.

   Symptoms usually resolve within two (2) to six (6) weeks after therapy is completed. Radiation
   enteritis is often not a self-limited illness, as over 80% of patients who receive abdominal
   radiation therapy complain of a persistent change in bowel habits. Moreover, acute radiation
   injury increases the risk of development of chronic radiation enteropathy, and overall 5% to 15%
   of the patients who receive abdominal or pelvic irradiation will develop chronic radiation enteritis.
   Patients today are typically treated with antidiarrheals, pain killers, or enzymes which essentially
   treat the symptoms and not the underlying cause. In severe cases, systemic steroids are used;
   however, their use often leaves patients vulnerable to other forms of infection, as these steroids
   are known to weaken the immune system.

   SGX201 is entering a Phase 1/2 multicenter, open-label, sequential, dose-escalation study of
   approximately 36 patients. Patients with rectal cancer who are scheduled to undergo concurrent
   radiation and chemotherapy prior to surgery will be enrolled in four (4) dose groups. The
   objectives of the study are to evaluate the safety and maximum tolerated dose of escalating
   doses of SGX201, as well as the preliminary efficacy of SGX201 for prevention of signs and
   symptoms of acute radiation enteritis. In support of the Phase 1/2 study, Soligenix has received a
   Small Business Innovation Research (SBIR) grant award of approximately $500,000 over a two
   (2) year period from the National Institutes of Health (NIH) . The FDA has also designated
   SGX201as a “Fast Tracked Product”. Top line data from the study is expected in 1H 2011.

   Model Assumptions: We assume commercialization of SGX201 in 2015 in our model. We
   assume a lower cost of therapy at $2,000 per cycle with an average of two (2) cycles per
   treatment. We further assume Soligenix will partner out this product and receive a 25% royalty.
   We have not included milestone or upfront payments for the sake of conservatism. Market share
   penetration rates for SGX201 begin at 10% in 2015.




   National Securities Corporation           Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
Fundamental Research:
Biotechnology
February 1, 2010

   Exhibit 11: Soligenix (annual) model: orBec® Estimates
                                        Acute GI GVHD US                  2012                2013             2014            2015         2016
                   10,000 US Allogenic stem cell transplants            11,486             11,898           12,309          12,716       13,121
                               Market Size Growth (Annual)                                   3.6%             3.4%            3.3%         3.2%
              % Develop GvHD within 100 days post-transplant                                50.0%            50.0%           50.0%        50.0%
                              Target Market Acute GI GVHD                                    5,949            6,154           6,358        6,560
                               No. of Patients on Prevention                  0                864            3,274           5,671        8,153
                                   Market Share Penetration               3.8%              11.6%            13.1%           13.2%         8.8%
                            Number of Patients Procedures                   434              1,380            1,617           1,679        1,154
                         Cost of Therapy - (1-50 day course) $          15,455             15,630 $         16,104          16,593 $     17,096
                                                Price Growth                                   1%               3%              3%           3%
                                          U.S. Annual Sales $                    7   $         22 $             26 $            28 $         20
                                             % Growth (qtrly)                                 216%             21%              7%         -29%
                              Royalty Rate 35% of Net Sales $                    2   $              8   $          9    $      10    $        7


                                        Acute GI GVHD EU                  2012                2013             2014            2015         2016
                   10,000 US Allogenic stem cell transplants            11,486             11,898           12,309          12,716       13,121
                               Market Size Growth (Annual)                                   3.6%             3.4%            3.3%         3.2%
              % Develop GvHD within 100 days post-transplant                                50.0%            50.0%           50.0%        50.0%
                             Target Market Acute GI GVHD                                     5,949            6,154           6,358        6,560
                              No. of Patients on Prevention                   0                  0            1,944           4,298        6,826
                                   Market Share Penetration               0.6%               8.5%            12.2%           13.6%        14.6%
                            Number of Patients Procedures                    73              1,012            1,498           1,725        1,920
                                            Cost of Therapy $           11,591             11,722 $         12,078          12,444 $     12,822
                                               Price Growth                                    1%               3%              3%           3%
                                           EU Annual Sales $                     1   $         12 $             18 $            21 $         25
                                             % Growth (qtrly)                                1320%             52%             19%          15%
    Assume an EU Partnership - Royalty Rate 35% of Net Sales $                   0   $              4   $          6    $       8    $        9


                                   Prevention GI GVHD US                  2012                2013             2014           2015          2016
                   10,000 US Allogenic stem cell transplants            11,486             11,898           12,309          12,716       13,121
                                Market Size Growth (Annual)                                  3.6%             3.4%            3.3%         3.2%
            % of GVHD Market where Prophylaxis is Desirable                                 90.0%            90.0%           90.0%        90.0%
                         Target Market Prevention GI GVHD                                   10,708           11,078          11,445       11,809
                                  Market Share Penetration                                   7.3%            26.6%           44.6%        62.1%
                             Number of Patients Procedures                                     864            3,274           5,671        8,153
                      Cost of Therapy (80 days - Prevention) $          24,728             33,344 $         25,766          26,548 $     27,354
                                               Price Growth                                                   -23%              3%           3%
                                          U.S. Annual Sales $                -       $             22   $       84 $           151 $        223
                                             % Growth (qtrly)                                                 288%             78%          48%
                              Royalty Rate 35% of Net Sales $                -       $              8   $          30   $      53    $       78


                                  Prevention GI GVHD EU                   2012                2013             2014           2015          2016
                   10,000 US Allogenic stem cell transplants            11,486             11,898           12,309          12,716       13,121
                               Market Size Growth (Annual)                                   3.6%             3.4%            3.3%         3.2%
            % of GVHD Market where Prophylaxis is Desirable                                 90.0%            90.0%           90.0%        90.0%
                         Target Market Prevention GI GVHD                                   10,708           11,078          11,445       11,809
                                  Market Share Penetration                                   0.0%            15.8%           33.8%        52.0%
                             Number of Patients Procedures                                                    1,944           4,298        6,826
                                        Price per procedure $                -                          $   19,373          19,961 $     20,566
                                               Price Growth                                                                     3%           3%
                                           EU Annual Sales $                 -       $              2   $          38   $       86 $        141
                                             % Growth (qtrly)                                                                 127%          64%
    Assume an EU Partnership - Royalty Rate 35% of Net Sales $               -       $              1   $          13   $      30    $       49


                                     Chronic GI GVHD U.S.                 2012                2013             2014            2015         2016
                    10,000 US Allogenic stem cell transplants           11,486             11,898           12,309          12,716       13,121
                                Market Size Growth (Annual)                                  3.6%             3.4%            3.3%         3.2%
               2,500 = 3 years Annual Chronic GvHD patients               2,687             2,497            2,134           1,738        1,416
                          Growth Rate of Chronic Prevalance                                   93%              85%             81%          81%
     % of GVHD Market that develops chronically post 100 days                               25.0%            25.0%           25.0%        25.0%
             Target Market Chronic GI GVHD: New & Existing                                   2,975            3,077           3,179        3,280
                                    Market Share Penetration                                                  7.8%           27.5%        47.5%
                              Number of Patients procedures                                                     960           3,503        6,239
                 Cost of Therapy (assumes 2-50 day courses) $               -                           $   32,208          33,185 $     34,192
                                                 Price Growth                                                                   3%           3%
                                           U.S. Annual Sales $               -       $         -        $          31   $      116 $        214
                                             % Growth (qtrly)                                                                 275%          83%
                              Royalty Rate 35% of Net Sales $                -       $         -        $          11   $      41    $       75


                                      Chronic GI GVHD EU                  2012               2013             2014            2015         2016
                    10,000 EU Allogenic stem cell transplants           11,486             11,898           12,309          12,716       13,121
                                Market Size Growth (Annual)                                  3.6%             3.4%            3.3%         3.2%
               2,500 = 3 years Annual Chronic GvHD patients               2,748             2,652            2,428           2,027        1,651
                          Growth Rate of Chronic Prevalance
     % of GVHD Market that develops chronically post 100 days                                25.0%           25.0%           25.0%        25.0%
             Target Market Chronic GI GVHD: New & Existing                                    2,975           3,077           3,179        3,280
                                    Market Share Penetration                                                  1.8%           18.5%        38.5%
                              Number of Patients procedures                                                     218           2,359        5,058
                 Cost of Therapy (assumes 2 50 day courses) $                -                          $   12,168          24,889 $     25,644
                                                 Price Growth                                                                                3%
                                            EU Annual Sales $                -       $         -        $          5    $      59    $      130
                                             % Growth (qtrly)                                                                              121%
                              Royalty Rate 35% of Net Sales $                -       $         -        $          2    $      21    $       45


                               Radiation Enteritis SGX201                 2012               2013             2014             2015         2016
                   50,000 US & EU Radiation Enteritis Cases             54,693             56,659           58,613          60,554       62,480
                                Market Size Growth (Annual)                                  3.6%             3.4%            3.3%         3.2%
                                  Market Share Penetration                                                    0.0%           10.5%        26.0%
                             Number of Patients procedures                                                        0           6,378       16,266
                                            Cost of Therapy $                -                          $    2,023             2084 $     2,147
                                          Number of Cycles                                                        2               2            2
                                               Price Growth                                                                     3%           3%
                                    U.S.& EU Annual Sales $                  -       $         -        $      -        $       27 $         70
                                             % Growth (qtrly)                                                                              162%
                              Royalty Rate 25% of Net Sales $                -       $         -        $      -        $       7    $       17

                            US orBec® Soligenix Royalties                            $             39   $          50   $     103    $     160

                            EU orBec® Soligenix Roylaties $                      0   $              5   $          21   $       58   $      103

                                Radiation Enteritis SGX201                           $          -       $      -        $       7    $       17
                                                                Source: National Securities Estimates




   National Securities Corporation                                               Please refer to important disclosures at the end of this document
   120 Broadway, 27th Floor
   New York, NY 10271
   www.nationalsecurities.com
$SNGX Nnational.2.1.2010
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$SNGX Nnational.2.1.2010

  • 1. Fundamental Research: Biotechnology NATIONAL SECURITIES February 1, 2010 Established 1947, Member FINRA/SIPC Soligenix Investment Thesis We are initiating coverage of Soligenix with a Buy rating. We see the company’s : Ticker: lead product, orBec® (oral belcomethasone dipropionate or BDP) as a low risk, high reward proposition in acute, prophylactic and chronic GI GvHD (graft-versus- SNGX host disease), as well as for the prevention of acute radiation enteritis (cancer patients). The localized (oral) administration of this corticosteroid (through a Current Price: proprietary drug release formulation) has demonstrated efficacy in prior clinical $0.24 trials. The company is now running a confirmatory Phase 3 trial with data expected in the first half of 2011. We view the outcome of this trial as low risk Recommendation: given its design and the prior clinical history demonstrated with orBec®. BUY Highlights orBec® for GI GvHD: Now in a confirmatory Phase 3 trial: orBec® is an oral, Price Target: $1.50 locally acting therapy tailored to treat the gastrointestinal (GI) manifestations of GVHD. We believe the prior clinical record (Phase 2 and Phase 3) have set the Time Frame: stage for a positive outcome with the current pivotal trial. 12 Months Is there Clinical Risk? In our opinion this has been minimized. Based on data from the prior Phase 3 study of orBec®, the upcoming confirmatory Phase 3 clinical trial will be a highly powered, double-blind, randomized, placebo- Jason Kolbert controlled, multi-center trial with a target enrollment of 166 patients. The primary (212) 417-8287 jkolbert@nationalsecurities.com endpoint on the new study is the treatment failure rate at study day 80. This endpoint was successfully measured as a secondary endpoint (p-value 0.005) in LAST $0.24 the previous Phase 3 study which enrolled 129 patients. This clinical trial has now ANNHIGH $0.38 begun with results expected in the first half of next year. ANNLOW $0.09 Shares O/S-Diluted (model) 185,687 Market Capitalization (mln) $44 Soligenix has reached agreement on the design of the current confirmatory Phase 100-Day Average Daily Volume 453 3 clinical trial evaluating orBec® for the treatment of acute GI GVHD with both the FDA and EMEA. The agreement with the FDA was gained via the FDA's Special Protocol Assessment (SPA) procedure. An agreement via the SPA procedure is an agreement with the FDA that a Phase 3 clinical trial design (e.g., endpoints, sample size, control group and statistical analyses) is acceptable to support a regulatory submission seeking new drug approval. The agreement with the EMEA was obtained via the procedure for requesting Protocol Assistance. Source:BigCharts.com Is GvHD an Unmet medical Need? Acute GI GvHD is a debilitating and painful disease and constitutes an unmet medical need. It is a common disorder among immunocompromised cancer patients and occurs after these patients receive hematopoietic cell transplantation (HCT). Unlike organ transplants where the patient's body may reject the organ, in GvHD it is the donor cells that begin to attack the patient's (host's) body, most frequently the gastrointestinal tract, liver and skin. Patients with mild-to-moderate GI GvHD typically develop symptoms of anorexia, nausea, vomiting and diarrhea. If left untreated, GI GVHD can progress to ulcerations in the lining of the GI tract, and, in its most severe form, can be fatal. Current treatments include immunosuppresive therapies which themselves have a lot of side-effects and which can be suppressive to the graft itself. The idea of localized administration of steroid keeps systemic exposure low while delivering the drug in a targeted manner where it’s needed the most. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 2. Fundamental Research: Biotechnology February 1, 2010 Beyond Acute GvHD: Soligenix currently has an NIH supported grant to study orBec®’s use in the prevention of Acute GvHD. In addition, the company is also studying orBec® for the treatment of chronic GI GvHD. The active ingredient in orBec®, belcomethasone dipropionate or BDP, is also in early stages of development for radiation enteritis (SGX201), where it has been granted fast track status and as SGX203 (Crohn’s Disease) where it has orphan status in the pediatric Crohn’s population. What is the Size of the Market Opportunity for orBec®? We believe the market opportunity in GvHD in all of its various forms represents a significant opportunity between $150 and $300 million, with a 35% royalty back to Soligenix for North America (half the worldwide GvHD marketplace). These estimates do not include the potential in radiation enteritis (SGX-201) or in Crohn’s Disease (SGX-203) which is substantially larger than GvHD. Soligenix is developing orBec® using the 505(b)(2) regulatory pathway: We view this as a lower risk approach to re-tasking already approved drugs in new indications. In this case, orBec® is formulated for oral administration as a single product consisting of two tablets: one tablet is intended to release BDP in the proximal portions of the GI tract, and the other tablet is intended to release BDP in the distal portions of the GI tract. BDP has been marketed in the U.S. and worldwide since the early 1970s as the active pharmaceutical ingredient in nasal sprays and in metered-dose inhalers for the treatment of patients with allergic rhinitis and asthma. Its properties and safety profile are well known. Special Protocol Assessment (SPA): Soligenix has negotiated a “SPA” with the FDA and has a similar agreement with the EMEA. Positive results in the current confirmatory Phase 3 study should lead to market approval in both the US and all 27 EU member states. We note that Soligenix has not yet partnered orBec® in the EU or ROW. In our model we assume a partnership will occur with 35% royalty back to Soligenix. We do not, however, project any partnership milestones in Europe (for the sake of conservatism). Orphan Drug: orBec® has been granted orphan status in the US for acute and chronic GI GvHD, as well as the prevention of acute GVHD. orBec® also has orphan status in the EU for GI GvHD. In terms of patent protection, Soligenix has an issued patent on the treatment and prevention of GI GVHD through 2019. Orphan status provides protection in the US for seven(7) years and in Europe for ten (10) years (post market exclusivity). Fast Track Designation: orBec® has been granted fast track designation. From the FDA website: “Fast track is a process designed to facilitate the development, and expedite the review of drugs to treat serious diseases and fill an unmet medical need. The purpose is to get important new drugs to the patient earlier. Fast Track addresses a broad range of serious diseases”. Once a drug receives Fast Track designation, early and frequent communication between the FDA and a drug company is encouraged throughout the entire drug development and review process. In our discussions with Soligenix management, we find that this is the case. This frequent communication should, in effect, lower risk around trial design and outcomes and lead to an earlier drug approval. Sigma-Tau is the Partner: Soligenix licensed rights for North American and Mexico for orBec® and oral BDP to Sigma-Tau Pharmaceuticals, Inc. Soligenix receives a 35% royalty on all sales, and stands to receive $9 million in additional milestones over the next several years. Sigma-Tau will cover the costs of commercialization. Soligenix maintains manufacturing rights. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 3. Fundamental Research: Biotechnology February 1, 2010 The Biodefense Platform: Soligenix's biodefense activities are focused on developing biomedical countermeasures pursuant to the Project BioShield Act of 2004. Specifically, Soligenix’s lead program is a bioengineered vaccine designed to protect against the deadly effects of ricin toxin, which is considered a serious bioterrorism threat. There may also be additional utility in this platform in more traditional vaccines, such as flu. Soligenix is the world leader in ricin toxin vaccine research. Soligenix has achieved positive Phase 1 clinical trial results with RiVax™, demonstrating that the vaccine is well tolerated and induces antibodies in humans that neutralize the ricin toxin, recently shown to be 2,000-fold more toxic than previously thought. Soligenix can also manufacture RiVax™ at scale and under cGMP conditions. Having met these clinical and manufacturing conditions, RiVax™ is eligible for government procurement orders. There are no FDA-licensed vaccines or therapeutics against ricin toxin. Drug Delivery Platform: Soligenix has also developed a proprietary Lipid Polymer Micelle (LPM™) drug delivery technology. This technology is currently being used to enhance the oral delivery of leuprolide for the treatment of prostate cancer and endometriosis. Company Background Soligenix is a late-stage biopharmaceutical company with a significant product in orBec®, currently in a confirmatory Phase 3 pivotal trial for acute gastrointestinal graft-versus-host disease (GI GvHD). The development road for orBec® has been long and the company’s trial and regulatory expertise has grown dramatically since CEO Christopher J. Schaber, PhD took over operations. Soligenix has two (2) strategic areas of focus: 1. A therapeutics platform dedicated to the development of products for life-threatening conditions such as GI GvHD and Cancer; 2. A biodefense platform to develop vaccines for military and civilian applications. We conducted an in-depth review on the outlook for these programs, the catalysts and associated risks, and the commercial opportunities ahead. We conclude that Soligenix is undervalued relative to the opportunities and pipeline potential of the company. The Biotherapeutics Platform: orBec® (oral beclomethasone dipropionate or BDP) is a potent, locally acting corticosteroid being developed for the treatment, as well as the prevention, of acute and chronic gastrointestinal Graft-versus-Host disease (GI GvHD). GI GvHD is a common and potentially life-threatening complication of allogeneic hematopoietic cell transplantation (HCT). orBec® fits ideally into a recent trend we have observed: a re-tasking theme that finds new life for existing therapeutics. A common element in this re-tasking theme is the 505(b)(2) pathway which has certain inherent advantages: typically a faster pathway to marketplace, which allows the sponsor to claim an additional period of market exclusivity (three or five years), depending on the extent of change to the previously approved drug. orBec® (oral BDP) is designed to be an oral, locally acting therapy tailored to treat the GI manifestation of GvHD and reduce the need for systemic immunosuppressive drugs (e.g., prednisone). BDP is a highly potent, topically active corticosteroid that has a local effect on inflamed tissue. It is formulated as a single product consisting of two tablets: one intended to release BDP in the upper portions of the GI tract, and the other in the distal portions. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 4. Fundamental Research: Biotechnology February 1, 2010 The Biotherapeutics Platform: (continued): orBec® is currently in a confirmatory pivotal trial with a Special Protocol Assessment (SPA) agreement in place with the FDA for Acute GI GvHD. It is also being evaluated in an NIH- supported Phase 2, randomized, double-blind, placebo-controlled clinical study for the prevention of acute GvHD. In addition, the company plans to initiate a Phase 2 study for the treatment of chronic GI GvHD in 2010. We explore each of these markets and the inter-relations that exist between them. Given orBec® or oral BDP’s utility in GI disease, Soligenix is also investigating its use for the prevention and/or treatment of other GI disorders that are also characterized by inflammation. These include its utility in radiation enteritis (SGX201) and Crohn’s Disease (SGX203), and, on the BioDefense platform, its utility as a countermeasure against radiation injury (SGX202). Exhibit 1: Upcoming Potential Catalysts by Time Sequence Product Indication Event Timing Significance orBec® GVHD Acute FDA Grants SPA for Phase III trial completed orBec® GVHD (all) Sigma Tau Partnership for North American - 35% Royalty to Soligenix completed orBec® GVHD Acute EMEA Agreement of Phase III trial completed orBec® GVHD Acute Phase III Trial Start completed SGX-201 Radiation Enteritis Fast Track Status Granted completed SGX-201 Radiation Enteritis Initiate Phase I/II Radiation Enteritis Starts (4 centers) completed RiVax™ Ricin Vaccine Complete Phase 1a trial (safety in man); Blood titers efficacious in mice completed orBec® GVHD - Prevention US PII Prevention Study - Completes & Reports 1H-2010 ++ orBec® GVHD (all) EU Partnership for orBec® 1H-2010 ++ RiVax™ Ricin Vaccine Complete Phase 1b trial 1H-2010 + orBec® Chronic GVHD Initiate Phase II Study Chronic GVHD 2H-2010 + SGX-202 Radiation Injury Animal Efficacy Studies 2H-2010 + LPM Leuprolide (prostate cancer) Initiate Phase I Pka Study: Proof of Concept in Man 2H-2010 + orBec® GVHD - Prevention US PIII Pivotal Program Begins 1H-2011 + orBec® GVHD Acute Phase III Trial Completes & Reports 1H-2011 +++ orBec® GVHD Acute NDA Filed (class II Amendment to existing NDA - 6 mos review) 2H-2011 +++ SGX-201 Radiation Enteritis Phase I/II Radiation Enteritis Completes & Reports 1H-2011 ++ LPM Leuprolide (prostate cancer) Proof of Concept in Man : Report Data: ≥15% oral bioavailability in man 2H-2011 + SGX-203 Crohn's Disease Program Phase II Study 1H-2011 ++ RiVax™ Ricin Vaccine Begin PII in Man: (Safety) & Efficacy (blood titers) in Animal Model 1H-2011 + SGX-201 Radiation Enteritis Pivotal Study Begins 1H-2012 + LPM Leuprolide (prostate cancer) Partnership Deal for "LPM Platform" 1H-2012 ++ orBec® GVHD Acute NDA Approved 1H-2012 ++ orBec® GVHD - Chronic Complete Phase II Study Chronic GVHD 1H-2012 +++ orBec® GVHD - Acute US GVHD Acute Launch 1H-2012 + orBec® GVHD - Acute EU GVHD Acute Launch 2H-2012 + RiVax™ Ricin Vaccine Report PII Data 2H-2012 + orBec® GVHD - Prevention Complete & Report Pivotal Prevention Study 2H-2012 ++ orBec® GVHD - Chronic US GVHD Chronic Pivotal Program 2H-2012 + orBec® GVHD - Prevention US GVHD Prevention Launch 2013 + orBec® GVHD - Prevention EU GVHD Prevention Launch 2013 + orBec® GVHD - Chronic US GVHD Chronic Completes & Reports 2014 ++ orBec® GVHD - Chronic US GVHD Chronic Launch 2014 + orBec® GVHD - Chronic EU GVHD Chronic Launch 2014 + SGX-201 Radiation Enteritis Pivotal Study Completes & Reports 2014 + RiVax™ Ricin Vaccine BARDA-DOD- HHS Review: Procurement 2014 ++ SGX-201 Radiation Enteritis Approval & Launch 2015 ++ Stock Significance Scale: + of moderate importance; ++ higher level; +++ highly Source:National Securities Forecasts and Company reports. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 5. Fundamental Research: Biotechnology February 1, 2010 Exhibit 2: Upcoming Potential Catalysts by Product Product Indication Event Timing Significance orBec® GVHD Acute FDA Grants SPA for Phase III trial completed orBec® GVHD (all) Sigma Tau Partnership for North American - 35% Royalty to Soligenix completed orBec® GVHD Acute EMEA Agreement of Phase III trial completed orBec® GVHD Acute Phase III Trial Start completed orBec® GVHD Acute Phase III Trial Completes & Reports 1H-2011 +++ orBec® GVHD Acute NDA Filed (class II Amendment to existing NDA - 6 mos review) 2H-2011 +++ orBec® GVHD Acute NDA Approved 1H-2012 ++ orBec® Chronic GVHD Initiate Phase II Study Chronic GVHD 2H-2010 + orBec® GVHD - Chronic Complete Phase II Study Chronic GVHD 1H-2012 +++ orBec® GVHD (all) EU Partnership for Orbec® 1H-2010 ++ orBec® GVHD - Acute US GVHD Acute Launch 1H-2012 + orBec® GVHD - Acute EU GVHD Acute Launch 2H-2012 + orBec® GVHD - Prevention US PII Prevention Study - Completes & Reports 1H-2010 ++ orBec® GVHD - Prevention US PIII Pivotal Program Begins 1H-2011 + orBec® GVHD - Prevention Complete & Report Pivotal Prevention Study 2H-2012 ++ orBec® GVHD - Prevention US GVHD Prevention Launch 2013 + orBec® GVHD - Prevention EU GVHD Prevention Launch 2013 + orBec® GVHD - Chronic US GVHD Chronic Pivotal Program 2H-2012 + orBec® GVHD - Chronic US GVHD Chronic Completes & Reports 2014 ++ orBec® GVHD - Chronic US GVHD Chronic Launch 2014 + orBec® GVHD - Chronic EU GVHD Chronic Launch 2014 + SGX-201 Radiation Enteritis Fast Track Status Granted completed + SGX-201 Radiation Enteritis Initiate Phase I/II Radiation Enteritis Starts (4 centers) completed + SGX-201 Radiation Enteritis Phase I/II Radiation Enteritis Completes & Reports 1H-2011 ++ SGX-201 Radiation Enteritis Pivotal Study Begins 1H-2012 + SGX-201 Radiation Enteritis Pivotal Study Completes & Reports 2014 + SGX-201 Radiation Enteritis Approval & Launch 2015 ++ LPM Leuprolide (prostate cancer) Initiate Phase I Pka Study: Proof of Concept in Man 2H-2010 + LPM Leuprolide (prostate cancer) Proof of Concept in Man : Report Data: ≥15% oral bioavailability in man 2H-2011 + LPM Leuprolide (prostate cancer) Partnership Deal for "LPM Platform" 1H-2012 ++ RiVax™ Ricin Vaccine Complete Phase 1a trial (safety in man); Blood titers efficacious in mice completed + RiVax™ Ricin Vaccine Complete Phase 1b trial 1H-2010 + RiVax™ Ricin Vaccine Begin PII in Man: (Safety) & Efficacy (blood titers) in Animal Model 1H-2011 + RiVax™ Ricin Vaccine Report PII Data 2H-2012 + RiVax™ Ricin Vaccine BARDA-DOD- HHS Review: Procurement 2014 ++ SGX-202 Radiation Injury Animal Efficacy Studies 2H-2010 + SGX-203 Crohn's Disease Program Phase II Study 1H-2011 ++ Stock Significance Scale: + of moderate importance; ++ higher level; +++ highly Source:National Securities Forecasts and Company reports. Exhibit 3: Soligenix development pipeline Development Stage Product Preclinical Phase I Phase II Phase III Market Orbec® GVHD Acute (fast track & orphan) Orbec® GVHD Prophylaxis (orphan) Orbec® GVHD Chronic (orphan) SGX-201 Radiation Enteritis (Fast Track) SGX-203 Crohn's Disease (orphan) LPM Platform - DD Program Source: Soligenix Exhibit 4: Soligenix BioDefense pipeline Development Stage Product Proof of Concept Animal Efficacy IND Filing Phase 1 Phase 2/3 BLA Filing RiVax™ (Ricin Vaccine) FDA Animal Rule SGX-202 Radiation Injury FDA Animal Rule Source: Soligenix National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 6. Fundamental Research: Biotechnology February 1, 2010 Financials: We estimate that Soligenix currently has approximately $7 million in cash and equivalents or about a year’s cash. In February of last year Soligenix out-licensed North American rights of orBec® to Sigma-Tau. The company also raised an additional $4.4 million via a common stock/warrant financing. In the initial deal, Soligenix received an initial payment of $6 million with another $9 million in possible milestones over the next several years. Soligenix has since achieved the first $1 million milestone under the agreement with the recent initiation of the confirmatory phase 3 clinical trial. Soligenix is also entitled to a 35% royalty (inclusive of drug manufacture) on all North American and Mexico sales, and retains manufacturing rights to orBec®. Sigma-Tau will assume all commercialization costs in North America. We note that the company retains all rights to orBec® outside North America. Soligenix, based on these estimates, has about a year’s worth of capital. However, we believe the company is in a strong position to sign additional partnerships for other geographies to generate non-dillutive financing. Lastly, as we will examine, Soligenix has received capital through multiple grant awards which support some of its bioterapeutics research and all of its BioDefense research. Bull Case: Soligenix is undervalued as the potential for orBec® is underappreciated. The prior trials (Phase 2 & 3) and the current confirmatory Phase 3 trial have effectively de-risked the outcome. The current confirmatory trial is highly powered (90%) and of the same design (drug, dose, patient population and expected control group outcomes) as the prior pivotal trial (powered at 80%) The primary endpoint: Treatment failure rate at Study Day 80, was highly statistically significant in the previous Phase 3 trial with p-value of 0.005. Market factors suggest orBec® can acquire significant penetration in the GvHD marketplace as the first approved drug for GI GVHD. The GvHD market is concentrated and closely-knit and information is disseminated rapidly among the Key Opinion Leaders (KOL’s). Beyond GvHD (Acute, Prevention and Chronic) a wide range of other indications, such as Radiation Enteritis and Crohn’s Disease exists. North American rights are partnered with Sigma-Tau, EU and rest of world, however, are open for partnership. Soligenix also has an attractive drug delivery platform with Lipid Polymer Micelles (LPM) platform technology and a very active BioDefense program led by RiVax™ (Ricin Toxin Vaccine). All this, with a market capitalization of under $50 million. Bear Case: orBec® is similar to generic enteric-coated budesonide and other steroids which are cheaply available and used today off-label to treat GvHD. orBec® will not be able to achieve the price we project even with the pharmacoeconomic justifications, as hospitals will continue to use cheaper steroids to treat GvHD. Bears may also argue that the clinical risk is being underestimated in the current orBec® confirmatory trial. Soligenix has given away too much of the economics in the license deal with Sigma-Tau. The GvHD marketplace is small and treatment paradigm is shifting away from BMT toward new biologic therapies; as such, the market is becoming smaller, not larger, over time. The treatment paradigm in GvHD is not likely to shift towards prevention and that market opportunity is over-estimated. The market opportunity in chronic is unique in that these patients have a different set of immunological problems. As such, the clinical risk that a true benefit can be demonstrated in these patients is high. The remaining opportunities at the company, include the drug delivery platform (Lipid Polymer Micelle -LPM™) which is unproven and the company lacks the resources to continue to develop this platform. Lastly, the biodefense platform deserves minimal value as the company is totally dependent on the US Government as a client. Prior experiences with other companies suggest that the road to generate meaningful profit Is an arduous and difficult one. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 7. Fundamental Research: Biotechnology February 1, 2010 Our Take: We know that while cheaper steroids are a potential commercial threat, multiple examples of therapeutics that were re-tasked exist in other marketplaces, and once on label, off- label use of cheap generics was eliminated. In addition, the two tablet system of immediate and time release makes orBec® unique in treating this disease. We see orBec® as the key driver for Soligenix. Based on our analysis of the Phase 2 and Phase 3 trials, we see low clinical risk in the current Phase 3 confirmatory trial. This trial uses a favorable endpoint and greater statistical powering, while keeping all other variables the same. As such, we see a high likelihood of success. The best case scenario for Soligenix is a positive outcome in the current confirmatory Phase 3, Acute GI GvHD trial, followed by positive outcome in the Phase 2 NIH sponsored prevention trial. Mechanistically, we believe a good outcome in acute GvHD does set the stage for off- label use in the prevention and chronic marketplaces. Beyond orBec® in GvHD we see tremendous potential in other GI diseases (Crohn’s), Radiation Enteritis and on the BioDefense side, Radiation Injury (orBec® as a counter-measure). We view the Biodefense and LPM platforms as creating a positive upside option for investors. On the BioDefense side, little value is TM ascribed for RiVax and/or the vaccine development platform (vaccines stable at room temperature), but investors should note that Soligenix has recently received a $9.4 million dollar development award to support the heat stabilization platform. What is GvHD? Graft-versus-host disease is a frequent complication of allogeneic hematopoietic cell transplantation (HCT). In GvHD, the donor's bone marrow or stem cells attacks the patient's organs and tissues, impairing his ability to function, and increasing the patient's susceptibility to infection. Approximately 50 per cent of patients undergoing an allogeneic HCT with a related HLA-matched donor develop GI GvHD. GvHD is not usually a complication of autologous BMTs although there is an approximate 8% incidence after these procedures as well. GvHD is often thought of as a single disease. In fact, it is two diseases: acute GvHD and chronic GvHD. Patients may develop one, both or neither. Acute and chronic GvHD are similar in their symptoms, but different in their clinical signs and time of onset. (Clinical signs are the result of physical exams, x-rays or lab tests that confirm the existence and extent of a disease.) (See Exhibit 5.) GvHD can be a temporary inconvenience or a serious, life-threatening disease. Older transplantation patients are more likely to develop GvHD than younger patients. The incidence and severity of GVHD is also higher among patients whose bone marrow donor or stem cells are unrelated or not perfectly matched. The symptoms of GvHD are many and varied, and the list may at first be overwhelming. pp Exhibit 5: A normal upper GI Mucosa (left side) and one being attacked (Acute GvHD) Source: Soligenix National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 8. Fundamental Research: Biotechnology February 1, 2010 How is GvHD treated today? There are no approved therapies to prevent or treat GvHD, but there are many off-label therapies used to treat the condition. These include the use of immunosuppressive drugs such as cyclosporine (alone or in combination with systemic steroids, namely prednisone) and methotrexate prior to the transplant as a preventive measure. These have proven effective in reducing the severity, but not necessarily the incidence, of GvHD. They may be administered for several months post-transplant, particularly if acute GvHD progresses to Stage II, or if the patient develops chronic GvHD. These therapeutics weaken the ability of the donor's immune system to launch an attack against the patient's organs and tissues and they have side effects. Cyclosporine can be very toxic to the kidneys. It can cause an increase in hair growth on the body, especially facial hair on women, and, on rare occasions, can result in neurological problems such as seizures, confusion, anxiety, and changes in thought processes. Methotrexate may cause inflammation of the mouth, nose and/or throat. Side effects of prednisone include weight gain, fluid retention, elevated blood sugar level, insomnia, mood swings and/or confused thinking. One of the key concerns with using prednisone is that it suppresses the graft (bone marrow and stem cell transplantation) itself. Additionally, and, perhaps, most dangerously, prednisone suppresses the immune system and leaves the body open to opportunistic infections. Multiple studies have shown the positive correlation between infection rates and increasing doses of prednisone. Exhibit 6: orBec® - A Targeted Approach to GI GvHD. orBec® is delivered in a two-pill system. Each tablet contains 1 mg BDP, 1 Immediate Release (IR) tablet designed to release in the upper GI tract and 1 Enteric Coated (EC) tablet designed to release in the lower GI tract. The total dose is only 8 mgs BDP per day. We believe that by comparison to traditional systemic steroids regimens (prednisone), the BDP doses are substantially lower and, thus, safer. Diagram showing dispersion of Diagram showing dispersion IR tablet in the stomach of IR and EC tablets in small intestine Source: Soligenix Clinical Data – orBec® is currently in a confirmatory Phase 3 trial. In January 2007, Soligenix (at that time called DOR BioPharma) reported results from the first pivotal Phase 3 trial. The trial was 129 patient, randomized, double-blind, placebo-controlled, and multicenter. In that trial, orBec® showed statistically significant results, with reductions of risk of treatment failure and mortality rates compared to control (placebo). Unfortunately, the trial’s primary endpoint was time to treatment failure through day 50 where statistical significance was not achieved (p=0.1177), but a positive trend established. A secondary endpoint of time to treatment failure through day 80 was met (p=0.0226). Additionally, with the secondary endpoint of mortality through day 200 post transplant, orBec® did show a statistically significant improvement (p=0.014). This statistical improvement was maintained at one year post randomization (p=0.04), demonstrating that orBec® not only had an effect on controlling acute GI GvHD, but also had a positive impact on patients’ underlying cancer. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 9. Fundamental Research: Biotechnology February 1, 2010 Exhibit 7: orBec® - Previous Phase 3 Study Results Key Results orBec n=62 Placebo n=67 p-value Time to Treatment Failure through Day 50 (primary endpoint) 0.118 Treatment Failure Rate at Day 50 18 (31%) 30 (48%) 0.051 Time to Treatment Failure through Day 80 0.023 Treatment Failure Rate at Day 80 22 (39%) 39 (65%) 0.005 Mortality Rate at 200 Days 5 Post-Transplant (8%) 16 (24%) 0.014 Source: Soligenix Exhibit 8: orBec® - Kaplan-Meier Survival Curves: Time to Treatment Failure through Day 80 p=0.0226. The curve shows a clear separation between control arm and ? Source: Hockenbery et al. 2007. Blood National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 10. Fundamental Research: Biotechnology February 1, 2010 Exhibit 9: orBec® - Comprehensive Mortality Data Percentage Long-Term Survival p-value orBec reduction in Outcomes orBec Placebo vs. placebo mortality Mortality Rate at 200 days post transplant - Pivotal Phase 3 study 5 (8%) 16 (24%) 0.013 66% Mortality Rate at 200 days post transplant - Prior Phase 2 study 3 (10%) 6 (21%) 0.18 55% Mortality Rate among mismatched donors at 200 days post transplant Pivotal Phase 3 study 1(4%) 10 (42%) 0.02 94% Mortality Rate at 1 year post randomization - Pivotal Phase 3 study 18 (29%) 28 (42%) 0.04 46% Mortality Rate at 1 year post randomization - Prior Phase 2 study 6 (19%) 9 (31%) 0.26 45% Mortality Rate at median time periods at 3.5 years – Both studies combined 37 (40%) 49 (51%) 0.03 37% Source: Hockenbery et al. 2007. Blood What is the Clinical Development Path Forward for orBec®? A Special Protocol Assessment (SPA) for confirmatory, pivotal Phase 3 clinical trial has been cleared by FDA. This confirmatory trial is highly powered and of similar design to the previous Phase 3 study with a targeted enrollment of approximately 166 patients, (powered at 90% to detect the treatment failure rate at day 80), which was highly statistically significant in the previous Phase 3 trial (p-value of 0.005). This provides us with a strong basis for our confidence in the efficacy of the outcome of the current confirmatory trial. In addition, there is EMEA agreement on the Phase 3 protocol for potential EU approval. The trial has been initiated, and completion is targeted for 1H 2011. Exhibit 10: Confirmatory Phase 3 Replicates Prior Study: Improvements in design include changing the primary endpoint to time to treatment failure at day 80 (achieved in the prior trial with a p-value of 0.005) which should increase the likelihood of success. Other key factors; drug, dose, patient population and expected control group outcomes have remained constant from the prior Phase 3 study. Prior Phase 3 Confirmatory Phase 3 Number of Sites Multicenter Multicenter Number of patients 129 166 Allogenic transplant patients with Patient Population Grade 2 GI GvHD Same Powering 80% 90% Treatment Failure Rate at Time to Treatment Failure Through Day 80 (p-value of 0.005 in Primary endpoint Day 50 prior Phase 3) 8 mg beclomethasone / 1mg BDP Delivered dose and per table / 2 tablets 4 times per day / frequency of dose 50 days Same 2 Randomized groups: High dose prednisone for 10 days with rapid taper with 50 days on placebo or Design drug Same Source: Soligenix National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 11. Fundamental Research: Biotechnology February 1, 2010 Soligenix – Intellectual Property Orphan Drug: orBec® has been granted orphan status in the US for treatment of acute and chronic GI GvHD, as well as for the prevention of acute GvHD. orBec® also has orphan status in the EU for GI GvHD. In terms of patent protection, Soligenix has an issued patent on the treatment and prevention of GI GvHD through 2019. Orphan status provides protection in the US for seven (7) years and in Europe for ten (10) years (post market exclusivity). Orphan status should extend patent protection for orBec® in the prevention markets in the EU through 2023, and in the US / EU chronic marketplace through 2020, 2024 respectively. Model Assumptions: orBec® : In Figures 11 and 12 we present annual and quarterly sales projections for orBec® in the Acute, US and European markets, in the Prevention, US and European markets and in the Chronic, US and European markets for GvHD. We have built into these models several assumptions that are critical to the Soligenix story. 1. We assume that the size of the annual allogenic stem cell transplant marketplace in the US is approximately 10,000 patients per year and is growing at just over 3% per year. Approximately 50% of these patients will develop acute GvHD, typically within the first 100 days of treatment. 2. Prevention versus Acute GvHD. A critical element in our thesis is our position that the treatment paradigm for GvHD will rapidly shift from treating acute patients to prevention. As such, the prevention market essentially cannibalizes the acute marketplace. Our thesis is based on conversations with thought leaders and market research data that Soligenix’s partner, Sigma-tau, has performed. The driving force behind prevention will be a combination of the benign nature of orBec® (small dose, local delivery) versus alternative treatments such as methotrexate, cyclosporine or prednisone. 3. Market Share Penetration. We assume a modest penetration rate of 4% in the acute marketplace (beginning in 2012), versus a much more rapid penetration in the prevention marketplace (beginning in 2H-2013) which rises to 66% by 2016. We have noted that in the US, 15 centers represent more than half of all the transplants, so market penetration can occur rapidly as key opinion leaders adopt a new treatment regimen. 4. We assume the European marketplace will follow the US market with approximately a year’s lag time. We assume US pricing in the Acute GvHD marketplace of $15,000 base cost of therapy with annual price increases, and assume that EU pricing will be approximately 75% of US pricing. Prevention pricing is modeled at $20,000 based on 80 days of therapy) versus 50 days in Acute. In the chronic marketplace, we assume a course of therapy of between 2 and 50 days, or $30,000 annual cost of therapy. 5. Pricing assumptions have been based on our discussions with Soligenix management, and our understanding of the pharmaco-economic value that orBec® brings to the over- all cost of treating transplant patients. It is critical to note that some may argue that there is some treatment today off label with other oral steroids such as budesonide which is generically available at a cost of a few dollars per day. We believe the combination of orBec’s® novel two pill deliver system and an approved label will eliminate the use of cheaper non approved oral steroids. There are a number of examples of this dynamic occurring in the marketplace. 6. We assume a 35% royalty will be paid to Soligenix from partner Sigma-Tau and we further assume a 35% royalty to Soligenix for European sales based on a new partnership. We have not included any other milestones or upfront payments for European rights to be conservative in our model assumptions. 7. We have not included any sales projections outside of the European and US marketplaces. Please see our models for detailed forecasts presented in Exhibits 11 and 12. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 12. Fundamental Research: Biotechnology February 1, 2010 SGX201 (Radiation Enteritis): SGX201 (oral beclomethasone dipropionate – BDP) is in development for the treatment of radiation enteritis, a side effect of radiation therapy used to treat certain cancers which involve treatment to the abdomen, pelvis or rectum. During delivery of treatment, some level of radiation is also delivered to healthy tissue, including the bowel. This can result in acute and chronic toxicities. The large and small bowel are very sensitive to radiation. The larger the dose of radiation, the greater the damage to normal bowel tissue. Radiation enteritis is a condition in which the lining of the bowel becomes swollen and inflamed during or after radiation therapy to the abdomen, pelvis or rectum. Most tumors in the abdomen and pelvis need large doses of radiation, and almost all patients receiving radiation to the abdomen, pelvis or rectum will show signs of acute enteritis. Patients with acute enteritis may experience nausea, vomiting, abdominal pain, diarrhea and bleeding, among other symptoms. Some patients may develop severe dehydration and require hospitalization. With diarrhea, the gastrointestinal tract does not function normally, and nutrients such as fat, lactose, bile salts, and vitamin B12 are not well absorbed. Symptoms usually resolve within two (2) to six (6) weeks after therapy is completed. Radiation enteritis is often not a self-limited illness, as over 80% of patients who receive abdominal radiation therapy complain of a persistent change in bowel habits. Moreover, acute radiation injury increases the risk of development of chronic radiation enteropathy, and overall 5% to 15% of the patients who receive abdominal or pelvic irradiation will develop chronic radiation enteritis. Patients today are typically treated with antidiarrheals, pain killers, or enzymes which essentially treat the symptoms and not the underlying cause. In severe cases, systemic steroids are used; however, their use often leaves patients vulnerable to other forms of infection, as these steroids are known to weaken the immune system. SGX201 is entering a Phase 1/2 multicenter, open-label, sequential, dose-escalation study of approximately 36 patients. Patients with rectal cancer who are scheduled to undergo concurrent radiation and chemotherapy prior to surgery will be enrolled in four (4) dose groups. The objectives of the study are to evaluate the safety and maximum tolerated dose of escalating doses of SGX201, as well as the preliminary efficacy of SGX201 for prevention of signs and symptoms of acute radiation enteritis. In support of the Phase 1/2 study, Soligenix has received a Small Business Innovation Research (SBIR) grant award of approximately $500,000 over a two (2) year period from the National Institutes of Health (NIH) . The FDA has also designated SGX201as a “Fast Tracked Product”. Top line data from the study is expected in 1H 2011. Model Assumptions: We assume commercialization of SGX201 in 2015 in our model. We assume a lower cost of therapy at $2,000 per cycle with an average of two (2) cycles per treatment. We further assume Soligenix will partner out this product and receive a 25% royalty. We have not included milestone or upfront payments for the sake of conservatism. Market share penetration rates for SGX201 begin at 10% in 2015. National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com
  • 13. Fundamental Research: Biotechnology February 1, 2010 Exhibit 11: Soligenix (annual) model: orBec® Estimates Acute GI GVHD US 2012 2013 2014 2015 2016 10,000 US Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% % Develop GvHD within 100 days post-transplant 50.0% 50.0% 50.0% 50.0% Target Market Acute GI GVHD 5,949 6,154 6,358 6,560 No. of Patients on Prevention 0 864 3,274 5,671 8,153 Market Share Penetration 3.8% 11.6% 13.1% 13.2% 8.8% Number of Patients Procedures 434 1,380 1,617 1,679 1,154 Cost of Therapy - (1-50 day course) $ 15,455 15,630 $ 16,104 16,593 $ 17,096 Price Growth 1% 3% 3% 3% U.S. Annual Sales $ 7 $ 22 $ 26 $ 28 $ 20 % Growth (qtrly) 216% 21% 7% -29% Royalty Rate 35% of Net Sales $ 2 $ 8 $ 9 $ 10 $ 7 Acute GI GVHD EU 2012 2013 2014 2015 2016 10,000 US Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% % Develop GvHD within 100 days post-transplant 50.0% 50.0% 50.0% 50.0% Target Market Acute GI GVHD 5,949 6,154 6,358 6,560 No. of Patients on Prevention 0 0 1,944 4,298 6,826 Market Share Penetration 0.6% 8.5% 12.2% 13.6% 14.6% Number of Patients Procedures 73 1,012 1,498 1,725 1,920 Cost of Therapy $ 11,591 11,722 $ 12,078 12,444 $ 12,822 Price Growth 1% 3% 3% 3% EU Annual Sales $ 1 $ 12 $ 18 $ 21 $ 25 % Growth (qtrly) 1320% 52% 19% 15% Assume an EU Partnership - Royalty Rate 35% of Net Sales $ 0 $ 4 $ 6 $ 8 $ 9 Prevention GI GVHD US 2012 2013 2014 2015 2016 10,000 US Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% % of GVHD Market where Prophylaxis is Desirable 90.0% 90.0% 90.0% 90.0% Target Market Prevention GI GVHD 10,708 11,078 11,445 11,809 Market Share Penetration 7.3% 26.6% 44.6% 62.1% Number of Patients Procedures 864 3,274 5,671 8,153 Cost of Therapy (80 days - Prevention) $ 24,728 33,344 $ 25,766 26,548 $ 27,354 Price Growth -23% 3% 3% U.S. Annual Sales $ - $ 22 $ 84 $ 151 $ 223 % Growth (qtrly) 288% 78% 48% Royalty Rate 35% of Net Sales $ - $ 8 $ 30 $ 53 $ 78 Prevention GI GVHD EU 2012 2013 2014 2015 2016 10,000 US Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% % of GVHD Market where Prophylaxis is Desirable 90.0% 90.0% 90.0% 90.0% Target Market Prevention GI GVHD 10,708 11,078 11,445 11,809 Market Share Penetration 0.0% 15.8% 33.8% 52.0% Number of Patients Procedures 1,944 4,298 6,826 Price per procedure $ - $ 19,373 19,961 $ 20,566 Price Growth 3% 3% EU Annual Sales $ - $ 2 $ 38 $ 86 $ 141 % Growth (qtrly) 127% 64% Assume an EU Partnership - Royalty Rate 35% of Net Sales $ - $ 1 $ 13 $ 30 $ 49 Chronic GI GVHD U.S. 2012 2013 2014 2015 2016 10,000 US Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% 2,500 = 3 years Annual Chronic GvHD patients 2,687 2,497 2,134 1,738 1,416 Growth Rate of Chronic Prevalance 93% 85% 81% 81% % of GVHD Market that develops chronically post 100 days 25.0% 25.0% 25.0% 25.0% Target Market Chronic GI GVHD: New & Existing 2,975 3,077 3,179 3,280 Market Share Penetration 7.8% 27.5% 47.5% Number of Patients procedures 960 3,503 6,239 Cost of Therapy (assumes 2-50 day courses) $ - $ 32,208 33,185 $ 34,192 Price Growth 3% 3% U.S. Annual Sales $ - $ - $ 31 $ 116 $ 214 % Growth (qtrly) 275% 83% Royalty Rate 35% of Net Sales $ - $ - $ 11 $ 41 $ 75 Chronic GI GVHD EU 2012 2013 2014 2015 2016 10,000 EU Allogenic stem cell transplants 11,486 11,898 12,309 12,716 13,121 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% 2,500 = 3 years Annual Chronic GvHD patients 2,748 2,652 2,428 2,027 1,651 Growth Rate of Chronic Prevalance % of GVHD Market that develops chronically post 100 days 25.0% 25.0% 25.0% 25.0% Target Market Chronic GI GVHD: New & Existing 2,975 3,077 3,179 3,280 Market Share Penetration 1.8% 18.5% 38.5% Number of Patients procedures 218 2,359 5,058 Cost of Therapy (assumes 2 50 day courses) $ - $ 12,168 24,889 $ 25,644 Price Growth 3% EU Annual Sales $ - $ - $ 5 $ 59 $ 130 % Growth (qtrly) 121% Royalty Rate 35% of Net Sales $ - $ - $ 2 $ 21 $ 45 Radiation Enteritis SGX201 2012 2013 2014 2015 2016 50,000 US & EU Radiation Enteritis Cases 54,693 56,659 58,613 60,554 62,480 Market Size Growth (Annual) 3.6% 3.4% 3.3% 3.2% Market Share Penetration 0.0% 10.5% 26.0% Number of Patients procedures 0 6,378 16,266 Cost of Therapy $ - $ 2,023 2084 $ 2,147 Number of Cycles 2 2 2 Price Growth 3% 3% U.S.& EU Annual Sales $ - $ - $ - $ 27 $ 70 % Growth (qtrly) 162% Royalty Rate 25% of Net Sales $ - $ - $ - $ 7 $ 17 US orBec® Soligenix Royalties $ 39 $ 50 $ 103 $ 160 EU orBec® Soligenix Roylaties $ 0 $ 5 $ 21 $ 58 $ 103 Radiation Enteritis SGX201 $ - $ - $ 7 $ 17 Source: National Securities Estimates National Securities Corporation Please refer to important disclosures at the end of this document 120 Broadway, 27th Floor New York, NY 10271 www.nationalsecurities.com