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Open Science in Practice
IMAGINE 2015
Vienna, 11 June 2015
Dr. Peter Kraker
2Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
Researching the Reason for the Colony Collapse Disorder
(CCD)
5Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
(1) Bee hives
with CCD
(2) Bee hives without
CCD
Sequencing of microbes found in bees
Comparison with sequences of
known microbes
Evaluation which microbes are significantly more
common in hives with CCD
[Cox-Foster
et al. 2007]
Bermuda Rules
“Primary Genomic Sequence Should be in the Public Domain”
“Primary Genomic Sequence Should be Rapidly Released”
International collaboration
• EMBL-Bank (Europe)
• GenBank (USA)
• DNA Data Bank of Japan
6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
By Dr. Mark Pauley
Genomic Sequencing Data
6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
The Benefits of Publishing a Pre-print
6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
Corresponding Open Source Visualization “Head Start”
Jack Andraka
6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
[CC-BY 2.0 XPRIZE Foundation]
b
© Know-Center GmbH
SAVE THE DATE: i-KNOW Conference
Special Track on Science 2.0
October 21-23, 2015, Graz, Austria
6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics

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Open Science in Practice

  • 1. b b www.know-center.at Open Science in Practice IMAGINE 2015 Vienna, 11 June 2015 Dr. Peter Kraker
  • 2. 2Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics
  • 3. Researching the Reason for the Colony Collapse Disorder (CCD) 5Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics (1) Bee hives with CCD (2) Bee hives without CCD Sequencing of microbes found in bees Comparison with sequences of known microbes Evaluation which microbes are significantly more common in hives with CCD [Cox-Foster et al. 2007]
  • 4. Bermuda Rules “Primary Genomic Sequence Should be in the Public Domain” “Primary Genomic Sequence Should be Rapidly Released” International collaboration • EMBL-Bank (Europe) • GenBank (USA) • DNA Data Bank of Japan 6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics By Dr. Mark Pauley Genomic Sequencing Data
  • 5. 6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics The Benefits of Publishing a Pre-print
  • 6. 6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics Corresponding Open Source Visualization “Head Start”
  • 7. Jack Andraka 6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics [CC-BY 2.0 XPRIZE Foundation]
  • 8. b © Know-Center GmbH SAVE THE DATE: i-KNOW Conference Special Track on Science 2.0 October 21-23, 2015, Graz, Austria
  • 9. 6Know-Center GmbH • Research Center for Data-Driven Business and Big Data Analytics