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Searching Deeply for Data, Results and Tools What is Stopping Us?   Philip E. Bourne University of California San Diego [email_address] http://www.sdsc.edu/ pb Relevant Work from Us: http ://www.sdsc.edu/pb/SummaryScholarComm. pdf http://www.slideshare.net/pebourne/?? Berlin-9 Nov. 9, 2011
Meredith    A story that celebrates all that open access has done and shows the promise for the future
That is the good news… Now let me tell you what I believe we need to do to make Meredith the rule rather than the exception Disclaimer: My viewpoint is that of a computational biologist
The Research Enterprise Literature Data Methods
The Research Enterprise Without eScholarship http://www.flickr.com/photos/51282757@N05/5585299226/lightbox/
Literature ,[object Object],[object Object],PubMed Central Contents Nov 8, 2011 PubMed Contents Nov 8, 2011 Literature Data Methods
Literature –  But First What is the Promise Shared Function Literature Data Methods Immunology Literature Cardiac Disease Literature
Solution: We Need SciVerse™ like Developments Leveraging  OA Content ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Literature Data Methods
Literature - PMC ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Literature Data Methods ,[object Object],[object Object],[object Object],[object Object]
Solutions: Scientists As Advocates ,[object Object],[object Object],Literature Data Methods
Solution:  a) Play Upon a Scientist’s Guilt re The Reward System  b) Educate Evaluators The Right Thing To Do Reward P.E. Bourne 2011 Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia.  PLoS Comp. Biol . 7(1) e1002001
Solution:  Use the Traditional Reward System  in New Ways The Wikipedia Experiment – Topic Pages ,[object Object],[object Object],[object Object],[object Object],[object Object],Literature Data Methods
Problems Regarding Data ,[object Object],[object Object],[object Object],[object Object],[object Object],Literature Data Methods Disclaimer: My viewpoint is that of a computational biologist
Solutions Regarding Data ,[object Object],[object Object],[object Object],[object Object],Literature Data Methods Disclaimer: My viewpoint is that of a computational biologist
Problems Regarding Methods ,[object Object],[object Object],[object Object],Literature Data Methods Disclaimer: My viewpoint is that of a computational biologist
Solutions Regarding Methods ,[object Object],[object Object],[object Object],[object Object],Literature Data Methods Taverna Wings
Summary – Creating More Merediths ,[object Object],[object Object],[object Object],[object Object],[object Object]
General References ,[object Object],[object Object]
References to Exemplars ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Thank You! [email_address]

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Data, Results and Tools: What is Stopping Open Access

  • 1. Searching Deeply for Data, Results and Tools What is Stopping Us?   Philip E. Bourne University of California San Diego [email_address] http://www.sdsc.edu/ pb Relevant Work from Us: http ://www.sdsc.edu/pb/SummaryScholarComm. pdf http://www.slideshare.net/pebourne/?? Berlin-9 Nov. 9, 2011
  • 2. Meredith A story that celebrates all that open access has done and shows the promise for the future
  • 3. That is the good news… Now let me tell you what I believe we need to do to make Meredith the rule rather than the exception Disclaimer: My viewpoint is that of a computational biologist
  • 4. The Research Enterprise Literature Data Methods
  • 5. The Research Enterprise Without eScholarship http://www.flickr.com/photos/51282757@N05/5585299226/lightbox/
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  • 7. Literature – But First What is the Promise Shared Function Literature Data Methods Immunology Literature Cardiac Disease Literature
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  • 11. Solution: a) Play Upon a Scientist’s Guilt re The Reward System b) Educate Evaluators The Right Thing To Do Reward P.E. Bourne 2011 Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia. PLoS Comp. Biol . 7(1) e1002001
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