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How is the VIVO
Ontology
Structured?

                Paul Albert

This project is funded by the National Institutes of Health, U24
RR029822, "VIVO: Enabling National Networking of Scientists".
Data Storage

Data in VIVO is stored using Resource
Description Framework (RDF)

    Subject       Predicate         Object
 Walter Mondale   head of     Trilateral Commission
Semantic Representation of Data
                                                           has author
                                                                                Andrew McDonald

  Mining the record: Historical evidence for…                       author of
                                                                                     research area
                                                                                                        academic staff   	
  
                                                                                                        in
                                                                    research area for       academic staff
                                          has author
                            author of
         taught by
                                                    research area                 crop management
                             Susan Riha
                 teaches
                                                            research area for
                                                     headed by
CSS 4830                                                                                          NYS WRI
                                                         head of
                           faculty appointment in

                     features                    faculty members
                     person
   featured in                                                            Earth and Atmospheric Sciences



           Cornell’s supercomputers crunch weather data to help
           farmers manage chemicals
Reasoning with Ontologies

      Organization            Reasoning adds
                          triples to your system-
  College     Library        creates new data.


                        •  All Colleges are Organizations.
 Department
                        •  All Libraries are Organizations.
               Museum
                        •  All Departments are
                           Organizations.
                        •  All Museums are
                           Organizations.
VIVOs Core Ontology

•  Dublin core
•  Event ontology
•  FOAF
•  Geopolitical
•  SKOS
•  BIBO
VIVO	
  Core	
  Ontology	
  –	
  Bubble	
  
              diagram	
  
Example: Modeling a Person
•  Research (bibo:Document, vivo:Grant,
   vivo:Project, vivo:Software, vivo:Dataset,
   vivo:ResearchLaboratory)

•  Teaching (vivo:TeacherRole,
   vivo:AdvisingRelatioship)

•  Services (vivo:Service, vivo:CoreLaboratory,
   vivo:MemberRole)

•  Expertise (vivo:SubjectArea)
VIVO Ontology Localization

•  Different localization required by different
   institutions
  –  UF, Cornell, IU, WASHU, Scripps
•  How to make localization:
  –  Adding local namespace:
     •  UF: http://vivo.ufl.edu/ontology/vivo-ufl/
     •  core: http://vivoweb.org/ontology/core#
  –  Local classes are the subclasses of the VIVO
     Core
     •  foaf:Agent à foaf:Organization à           ufVivo:Non-
        Governmental Organization
Helpful Resource


An accessible intro to
the Semantic Web

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How is the VIVO ontology structured?

  • 1. How is the VIVO Ontology Structured? Paul Albert This project is funded by the National Institutes of Health, U24 RR029822, "VIVO: Enabling National Networking of Scientists".
  • 2. Data Storage Data in VIVO is stored using Resource Description Framework (RDF) Subject Predicate Object Walter Mondale head of Trilateral Commission
  • 3. Semantic Representation of Data has author Andrew McDonald Mining the record: Historical evidence for… author of research area academic staff   in research area for academic staff has author author of taught by research area crop management Susan Riha teaches research area for headed by CSS 4830 NYS WRI head of faculty appointment in features faculty members person featured in Earth and Atmospheric Sciences Cornell’s supercomputers crunch weather data to help farmers manage chemicals
  • 4. Reasoning with Ontologies Organization Reasoning adds triples to your system- College Library creates new data. •  All Colleges are Organizations. Department •  All Libraries are Organizations. Museum •  All Departments are Organizations. •  All Museums are Organizations.
  • 5. VIVOs Core Ontology •  Dublin core •  Event ontology •  FOAF •  Geopolitical •  SKOS •  BIBO
  • 6. VIVO  Core  Ontology  –  Bubble   diagram  
  • 7. Example: Modeling a Person •  Research (bibo:Document, vivo:Grant, vivo:Project, vivo:Software, vivo:Dataset, vivo:ResearchLaboratory) •  Teaching (vivo:TeacherRole, vivo:AdvisingRelatioship) •  Services (vivo:Service, vivo:CoreLaboratory, vivo:MemberRole) •  Expertise (vivo:SubjectArea)
  • 8. VIVO Ontology Localization •  Different localization required by different institutions –  UF, Cornell, IU, WASHU, Scripps •  How to make localization: –  Adding local namespace: •  UF: http://vivo.ufl.edu/ontology/vivo-ufl/ •  core: http://vivoweb.org/ontology/core# –  Local classes are the subclasses of the VIVO Core •  foaf:Agent à foaf:Organization à ufVivo:Non- Governmental Organization
  • 9. Helpful Resource An accessible intro to the Semantic Web